Bis-tris Propane Research Articles

Network homogeneity on linear and nonlinear viscoelasticity of polyethylene terephthalate vitrimers

Designing network topology with tunable dynamics and rheology behaviors is the key for vitrimers applications. In this study, PET vitrimers with varying crosslinking density and network homogeneity were created by using different Mw of precursors and branching agents (catalysts). Our results show that the dynamic network formed by propane-type branching agent such as 1,3-bis[tris(hydroxymethyl) methylamino] propane (BIS-TRIS propane), is more uniform due to steric hindrance effect compared to 2,2-Bis(hydroxymethyl)-2,2′,2″-nitrilotriethanol (BIS-TRIS). The thermal behavior of PET vitrimers was investigated by non-isothermal experiments, including glass transition and crystallization process. In particular, rheology behavior is sensitive to network structure and bond exchange process. The linear viscoelasticity (LVE) region of PET vitrimers is characterized by constructed pseudo-master curves that are guided by two distinct relaxation mechanisms: Rouse-type relaxation of strands and terminal relaxation of the network. Each relaxation mechanism is associated with a unique activation energy. The mechanical and processing properties of the PET vitrimers are reflected in their plateau modulus and characteristic relaxation time, which varies depending on the network topology. Based on the LVE analysis, we further investigated nonlinear rheology of PET vitrimers under extensional flow. Our results indicate that PET vitrimers exhibit significant strain hardening behavior, but display distinct stretching trends, corresponding to polymer melts' ductility. The ductility of materials decreases with a decrease in precursor's molecular weight (Mw), but improved with enhanced network homogeneity. Therefore, the crosslinking density and network homogeneity of dynamic network can be selectively tailored using appropriate precursors and branching agents to meet various industrial applications.

Comparing solution-gate and bottom-gate nanowire field-effect transistors on pH sensing with different salt concentrations and surface modifications

Field-effect transistors (FETs) have been developed as pH sensors by using various device structures, fabrication technologies, and sensing film materials. Different transistor structures, like extended-gate (EG) FETs, floating-gate FET sensors, and dual-gate (DG) FETs, can enhance the sensor performance. In this article, we report the effects of using solution-gate and bottom-gate FET configurations on pH sensing and investigate the influence of different ionic concentrations of buffers in the measured signals. The surface charge of hafnium dioxide (HfO2) affected by the buffer pH, with/without the modification of polyethylene glycol (PEG) terminated with hydroxyl groups, and the location of applied gate voltage are vital factors to the sensor performance in pH sensing. Based on the results, the solution-gate FET exhibits good pH sensitivity even in the high ionic strength solutions of bis-tris propane (BTP), and these values of pH sensitivity are close to the Nernst limit (59.2 mV/pH). In general, silane-PEG-OH modification can reduce the deviations of measured signals in pH sensing. The performance of bottom-gate FET is inferior in the BTP buffers with high ionic solutions but suitable to be operated in low ionic concentrations, such as 0.1, 1, and 10 mM BTP buffers. The size of the ions was also studied and discussed. The solution-gate FET demonstrates excellent performance under high ionic strengths, meaning a more significant potential for detecting biological molecules under physiological conditions.

Study on the preparation method of porous membranes with single pore size distribution and tailored pore sizes by the induced swelling effect of pre-set graft side chains

To improve the sieving accuracy of material separation, it is necessary to develop a porous membrane with tailored pore size and narrow pore size distribution. Polyvinylidene fluoride (PVDF), the mainstream membrane material, is a semi-crystalline polymer. On the basis of the high elastic state of the PVDF molecular chain in the amorphous region at room temperature, a novel method was proposed to prepare porous membranes with single pore size distribution and tailored pore sizes in this paper. First, 1,3-bis (tris(hydroxymethyl)methylamino) propane (Bis-Tris propane) was grafted onto the PVDF-CTFE main chain during casting solution preparation, and the membranes with the thin and nonporous skin layers were prepared by non-solvent-induced phase separation (NIPS), which had almost no water flux. The membrane with the nonporous skin layer produced a water flux of 35.3 L ∙ m−2∙ h−1∙ bar−1 after soaking in the alkaline glycine solution. FTIR and EDX tests demonstrated that small molecular glycine can be guided into the membrane matrix by the affinity with the polar groups on the pre-set side chains, inducing the reactive swelling effect, which led to the formation of new through holes. Subsequently, the membrane with the nonporous skin layer was initially soaked in ethanol to form pores in advance, then the induced reactive swelling of pre-set graft side chains was carried out. The water flux of obtained membrane was significantly up to 96.9 L ∙ m−2∙ h−1∙ bar−1, proving that the pre-pore forming process successfully strengthened the reactive swelling-caused pore generation effect. Furthermore, based on the enhanced swelling-caused pore generation strategy, amino acids with different molecular sizes were induced to the reactive swelling effect in the amorphous regions. The mathematical fitting showed a linear correlation between the average pore size of the membrane and the molar hydration volume of amino acids, and the membrane was single pore size distribution, verifying that controllably tailored membrane pore size can be realized by the reactive swelling effect of the reactive small molecule with different molecular sizes. Compared to some membranes with single pore size distribution prepared by track etching and anodic oxidation method, the membranes prepared by this method had higher water flux. The water contact angle result clarified that the membrane surfaces and pore channels had excellent hydrophilicity. The reactive swelling did not change the crystallinity and porosity, so the mechanical strength of the membrane did not deteriorate.

Retarding the diffusion rate of piperazine through the interface of aqueous/organic phase: Bis-tris propane tuned the trans-state of ultra-low concentration piperazine

An urgent challenge during the preparation of polyamide thin film composite membrane via the interfacial polymerization method was excessive diffusion rate of piperazine to form uncontrollable polyamide layer thickness, ultimately leaded to low water permeability to increase the operating cost. Herein, a uniquely new method, which brought down one order of magnitude of piperazine concentration to ultra-low grade (0.01% w·v−1) to retard the diffusion rate, was utilized to avoid the problem. However, the ultra-low concentration of piperazine could not easily react with trimesoyl chloride, bis-tris propane as conditioning agent was needed to overcame the trouble. The kinetics diffusion process of piperazine under the function of bis-tris propane was intensively studied by molecular dynamics simulation and other characterizations. Bis-tris propane could combine with piperazine to generate intermolecular force and then carry piperazine molecules moving toward the interface of aqueous/organic phase, which tuned the trans-state of piperazine to the benefit of rection. This work offered a novelty insight to surmount the problem of the excessive diffusion rate, which could promote the development of membrane technology.

Protein association on multimodal chromatography media

The phenomenon of protein-protein association on multimodal chromatography resins was described for two different case study examples. The adsorption pattern of single-component solutions of calcium-rich alpha-lactalbumin (aLaCa) and calcium-depleted alpha-lactalbumin (aLa) and their mixtures with bovine serum albumin was determined on a multimodal anion-exchange chromatography medium. In single-component solutions, both aLaCa and aLa exhibited identical adsorption behavior at low resin loadings, whereas at high loadings the adsorption strength of aLa markedly exceeded that of alaCa. In binary mixtures, the adsorption of BSA enhanced at high concentrations of aLa or aLaCa in the adsorbed phase. The unusual adsorption patterns observed were attributed to the tendency of the proteins for molecular association in the adsorbed phase in single and binary solutions. The phenomena was examined for different pH of the solution: pH 6, 7, 8, and different solvent environments: phosphate buffer (PB), bis tris buffer (BT), 100 mM NaCl in BT and bis tris propane buffer (BTP). The strongest effect was observed for PB and for 100 mM NaCl in BT.Its occurrence was also evidenced for other case study example, i.e., adsorption of single-component solutions and binary mixtures of a monoclonal antibody (mAb) and lysozyme (LYZ) on a multimodal cation-exchange chromatography medium. The enhancement of adsorption of mAb was observed at high concentrations of LYZ in the adsorbed phase. To quantify the underlying effects, a mechanistic model was used, which accounted for both protein association and exclusion resulting from attractive and repulsive protein-protein iterations in the adsorbed phase.

Elucidating the exchange interactions in a {GdIIICuII4} propellor.

The multinucleating ligand 2,2'-(propane-1,3-diyldiimino)bis[2-(hydroxymethyl)-propane-1,3-diol] (bis-tris propane, H6L) is used in the design of a new family of 3d-4f complexes that display an unusual {LnCu4} four-blade propeller topology. We report the synthesis, structure and magnetic characterisation of [LnCu4(H4L)4](Cl)2(ClO4)·6CH3OH, where Ln = Gd (1), Tb (2), Dy (3), La (4). Previously we have used CH3COO- and NO3- as co-ligands with bis-tris propane, but here the use of Cl- and ClO4- leads to coordination of four {Cu(H4L)} units around the central Ln ion. A magneto-structural analysis reveals that the geometrical arrangement of the Cu(II) centres defined by the H4L2- ligands controls the magnetic communication between the different metal centres. DFT calculations performed on the isotropic (Gd) and diamagnetic (La) systems 1 and 4 help to unravel the intriguing exchange interactions.

A novel polyester-amide loose composite nanofiltration membrane for effective dye/salt separation: The effect of long molecule on the interfacial polymerization

Loose nanofiltration (LNF) membrane with exclusively high dye rejection and inorganic salt permeation are remarkable method to treatment dye/salt wastewater for the achievement of zero liquid discharge. Herein, a long molecule bis-tris propane with amines and hydroxyl groups was firstly chosen as aqueous monomer in interfacial polymerization to fabricate a novel polyester-amide LNF membrane. Noteworthily, the investigation of morphology characterization and preparation conditions revealed that the size of molecule was a vital influence factor for the formation mechanism of unique loose structure of LNF made by long molecule. A new insight about the size of long molecule to form ultrathin thickness of self-repression layer on the formation mechanism of LNF was proposed in this work to replenish the previous theory. A series of characterization verified that the polyester-amide layer is negatively charged and hydrophilic due to the carboxyl and hydroxyl groups on the surface. Meanwhile, the tailored 0.3-LNF exhibited high water permeability (114.9 L m−2 h−1), dye rejection (98.83% RB 5) and low salt rejection (11.72% NaCl) under 0.5 MPa, which displayed good performance for the fractionation of dye/salt mixtures. In addition, the polyester-amide LNF membrane possesses a superior antifouling and stability performance.

Design of molecular magnetic materials based on a new family of mixed-lanthanide Co-Ln clusters by the use of the 1,3-Bis[tris(hydroxymethyl)-methylamino]propane ligand

A new family of tetranuclear Co-Ln clusters, including both single and mixed-lanthanides, was synthesized by the use of a bis-tris propane ligand. Our studies showed that although single-lanthanide {Co3Ln} compounds assembled from lanthanide elements heavier than Nd are not accessible, mixed-lanthanide analogues retaining the original structure can be obtained. An array of magnetic measurements was used to reveal the single-molecule magnet behaviors and magnetocaloric effect of Co-Ce/Dy and Co-Ce/Gd clusters, respectively. Thus, this study may open up new avenues for the design of molecular magnetic materials by synthesizing mixed-lanthanide 3d-4f clusters.

Novel anion exchange membrane chromatography method for the separation of empty and full adeno-associated virus.

A challenge in the production of recombinant Adeno-Associated Virus (AAV) for gene therapies is the presence of capsids that lack the required gene of interest. The impact of these empty vectors in therapies is not fully understood, however the ability to control the ratio of empty to full particles, which contain the genetic payload, is a necessary step in the purification of these viruses. In this study, a novel anion exchange chromatography elution method for enrichment of full AAV particles is demonstrated. A step gradient with small conductivity increases of around 1 mS cm-1 provides more efficient separation of empty and full AAV serotype 5 across membrane media as compared to conventional linear gradient method. The use of this approach in optimizing a simpler method for manufacturing processes and scalability to a larger chromatographic volume is explored. With this approach, the authors achieved greater than 4-fold enrichment of full capsids, to give a total of ≈50%-60% full capsids, using a 25mM Bis-Tris Propane pH 9.0 buffer system with NaCl as the eluting salt. Results suggest that this elution method can be implemented into a scalable process and can provide insight into development of elution methods for other AAV serotypes.

Photogeneration and reactivity of flavin anionic semiquinone in a bifurcating electron transfer flavoprotein

Electron transfer bifurcation allows production of a strongly reducing carrier at the expense of a weaker one, by redistributing energy among a pair of electrons. Thus, two weakly-reducing electrons from NADH are consumed to produce a strongly reducing ferredoxin or flavodoxin, paid for by reduction of an oxidizing acceptor. The prevailing mechanism calls for participation of a strongly reducing flavin semiquinone which has been difficult to observe with site-certainly in multi-flavin systems. Using blue light (450 nm) to photoexcite the flavins of bifurcating electron transfer flavoprotein (ETF), we demonstrate accumulation of anionic flavin semiquinone in excess of what is observed in equilibrium titrations, and establish its ability to reduce the low-potential electron acceptor benzyl viologen. This must occur at the bifurcating flavin because the midpoint potentials of the electron transfer (ET) flavin are not sufficiently negative. We show that bis-tris propane buffer is an effective electron donor to the flavin photoreduction, but that if the system is prepared with the ET flavin chemically reduced, so that only the bifurcating flavin is oxidized and photochemically active, flavin anionic semiquinone is formed more rapidly. Thus, excited bifurcating flavin is able to draw on an electron stored at the ET flavin. Flavin semiquinone photogenerated at the bifurcation site must therefore be accompanied by additional semiquinone formation by oxidation of the ET flavin. Consistent with the expected instability of bifurcating flavin semiquinone, it subsides immediately upon cessation of illumination. However comparison with yields of semiquinone in equilibrium titrations suggest that during continuous illumination at pH 9 a steady state population of 0.3 equivalents of bifurcating flavin semiquinone accumulates, and then undergoes further photoreduction to the hydroquinone. Although transient, the population of bifurcating flavin semiquinone explains the system's ability to conduct light-driven electron transfer from bis-tris propane to benzyl viologen, in effect trapping energy from light.

Combination of Aptamer Amplifier and Antigen-Binding Fragment Probe as a Novel Strategy to Improve Detection Limit of Silicon Nanowire Field-Effect Transistor Immunosensors

Detecting proteins at low concentrations in high-ionic-strength conditions by silicon nanowire field-effect transistors (SiNWFETs) is severely hindered due to the weakened signal, primarily caused by screening effects. In this study, aptamer as a signal amplifier, which has already been reported by our group, is integrated into SiNWFET immunosensors employing antigen-binding fragments (Fab) as the receptors to improve its detection limit for the first time. The Fab-SiNWFET immunosensors were developed by immobilizing Fab onto Si surfaces modified with either 3-aminopropyltriethoxysilane (APTES) and glutaraldehyde (GA) (Fab/APTES-SiNWFETs), or mixed self-assembled monolayers (mSAMs) of polyethylene glycol (PEG) and GA (Fab/PEG-SiNWFETs), to detect the rabbit IgG at different concentrations in a high-ionic-strength environment (150 mM Bis-Tris Propane) followed by incubation with R18, an aptamer which can specifically target rabbit IgG, for signal enhancement. Empirical results revealed that the signal produced by the sensors with Fab probes was greatly enhanced compared to the ones with whole antibody (Wab) after detecting similar concentrations of rabbit IgG. The Fab/PEG-SiNWFET immunosensors exhibited an especially improved limit of detection to determine the IgG level down to 1 pg/mL, which has not been achieved by the Wab/PEG-SiNWFET immunosensors.

Polyamines Counteract Carbonate-Driven Proteasome Stalling in Alkaline Conditions.

Cancer cells tend to increase intracellular pH and, at the same time, are known to intensively produce and uptake polyamines such as spermine. Here, we show that various amines, including biogenic polyamines, boost the activity of proteasomes in a dose-dependent manner. Proteasome activity in the classical amine-containing buffers, such as 2-(N-morpholino)ethanesulfonic acid (MES), Tris, (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), glycylglycine, bis-Tris propane, and bicine, has a skewed distribution with a maximum at pH of 7.0–8.0. The activity of proteasomes in buffers containing imidazole and bis-Tris is maintained almost on the same level, in the pH range of 6.5–8.5. The third type of activation is observed in buffers based on the amino acids arginine and ornithine, as well as the natural polyamines spermine and spermidine. Proteasome activity in these buffers is dramatically increased at pH values greater than 7.5. Anionic buffers such as phosphate or carbonate, in contrast, inhibit proteasome activity during alkalization. Importantly, supplementation of a carbonate–phosphate buffer with spermine counteracts carbonate-driven proteasome stalling in alkaline conditions, predicting an additional physiological role of polyamines in maintaining the metabolism and survival of cancer cells.

Borate-containing background electrolytes to improve CE separation in bare capillaries.

The paper describes how borate-containing BGEs modify ζ-potential and so EOF in bare fused silica capillaries. This surface modification can be used to suppress EOF and improve the separation performance of CZE including capillary sieving electrophoresis (CSE). Boric acid forms complexes with polysaccharides used as sieving matrices in CSE and other compounds containing hydroxyl groups, including polyol bases such as Tris, triethanolamine, and Bis-Tris propane. High concentration of boric acid in BGEs leads to a strong interaction of boric acid with the silica surface of the capillary wall and this suppresses or even completely eliminates ζ-potential and EOF. Using a polyol base with several charge-carrying amino groups, such as Bis-Tris propane, can actually reverse EOF. We demonstrate the use of various borate-containing BGEs in bare fused silica capillaries for size-separation of DNA fragments, size-separation of proteins by SDS CSE, and also by CZE in the absence of any sieving matrix.

Identification and characterization of a protease (EuRP-61) from Euphorbia resinifera latex

A serine protease designated as EuRP-61 was purified from Euphorbia resinifera latex. The N-terminal sequence of 15 amino acids of EuRP-61 supported the conclusion that the enzyme was a serine protease because its amino acid sequence had homology (between 50 and 70% identities) with the subtilisin-like proteases of other plants. EuRP-61 had a molecular weight estimated at 61 kDa analyzed by MALDI-TOF MS. The enzyme could cleave human fibrinogen with optimal conditions at pH 5.0 and 45 °C. The enzyme had a broad range of pH stability from 1 to 14 and tolerance to denaturation up to a temperature of approximately 65–66 °C. EuRP-61 hydrolyzed fibrinogen with a Michaelis constant (Km) of 4.95 ± 0.1 μM; a maximal velocity (Vmax) of 578.1 ± 11.81 ng min−1; and a catalytic efficiency (Vmax/Km) of 116.8 ± 1 ng μM−1 min−1. EuRP-61was crystallized under the condition of sodium iodide (0.2 M), Bis-Tris propane (0.1 M, pH 8.5) and PEG3350 (20%) by the sitting-drop method. The crystal belonged to space group P212121, with unit cell dimension a = 109.91, b = 67.38 and c = 199.45 Å and diffracted X-ray to 2.53 Å resolution. The crystal structure of EuRP-61 will be explored further by special phase solving techniques.

Neutralized chimeric DNA probe for the improvement of GC-rich RNA detection specificity on the nanowire field-effect transistor

Silicon nanowire (SiNW) field-effect transistors (FETs) is a powerful tool in genetic molecule analysis because of their high sensitivity, short detection time, and label-free detection. In nucleic acid detection, GC-rich nucleic acid sequences form self- and cross-dimers and stem-loop structures, which can easily obtain data containing signals from nonspecific DNA binding. The features of GC-rich nucleic acid sequences cause inaccuracies in nucleic acid detection and hinder the development of precision medicine. To improve the inaccurate detection results, we used phosphate-methylated (neutral) nucleotides to synthesize the neutralized chimeric DNA oligomer probe. The probe fragment originated from a primer for the detection of hepatitis C virus (HCV) genotype 3b, and single-mismatched and perfect-matched targets were designed for single nucleotide polymorphisms (SNP) detection on the SiNW FET device. Experimental results revealed that the HCV-3b chimeric neutralized DNA (nDNA) probe exhibited better performance for SNP discrimination in 10 mM bis-tris propane buffer at 25 °C than a regular DNA probe. The SNP discrimination of the nDNA probe could be further improved at 40 °C on the FET device. Consequently, the neutralized chimeric DNA probe could successfully distinguish SNP in the detection of GC-rich target sequences under optimal operating conditions on the SiNW FET device.

Elimination of ghost peaks by optimization of anion exchange chromatography method for determination of gamma-carboxyglutamic acid (Gla)-domainless impurity in recombinant activated clotting factor VII drug products

Secreted recombinant activated clotting factor VII activated (rFVIIa) in cell culture media missing gamma-carboxyglutamic acid (Gla) domain as a result of failure in gamma-carboxylation or cell lysis is called Gla-domainless impurity which has less negative charge compared to native rFVIIa. Based on risk assessment, this type of impurity is considered as critical drug product quality attribute of rFVIIa and its quantitative analysis in product batches is a critical issue in quality control laboratories.Analysis of Gla-domainless impurity is accomplished by Strong Anion Exchange Chromatography (SAX) in recombinant factor VIIa using Tris and Bis-Tris propane salt buffers as equilibrating buffers and high concentration ammonium acetate as an eluent. Appearance of ghost peaks with notable intensity during elution time of Gla-domainless impurity caused distortion of the related peak and interference with robust and accurate quantification of this impurity. Subsequently, the ghost peak was analyzed by LC-ESI-MS to determine the structure which showed the m/z values at 905.27, 623.53 and 341.60 and 563.73.To find the source of these ghost peaks, quality of water, buffer salts and Chelex-100 together with ionic strength of mobile phase A (addition of 25 mM NaCl) were considered as affecting parameters and several experiments designed with DOE software to optimize the best condition of highest quality the method with lowest signal of ghost peak noises.By interpretation of DOE result, it is concluded that high grade water and buffer salt along with high quality Chelex-100 resins are important factors to achieve a method with lowest ghost peaks. However, addition of 25 mM NaCl to mobile phase A with either lower quality buffer salts or lower water grade yields high quality chromatogram peak with acceptable ghost peaks. LC/MS analysis indicates that macrostructures of Bis-Tris propane made up as a result of hydrogen bonds with each other or Tris molecules can be the source of ghost peaks.

Crystal Structure of the Type VI Secretion System Accessory Protein TagF from Pseudomonas Aeruginosa.

Type VI Secretion System (T6SS) has been found in approximately onequarter of the gram-negative bacterial species, and its structural characteristics appear to slightly differ from species to species. The genes encoding T6SS are designated as type six secretion A-M (tssA-M). The expression of the tss gene cluster is regulated by various accessory genes, designated as type VI-associated genes A-P (tagA-P). Tag family proteins have been commonly found in bacteria expressing T6SS but not in all bacterial species. For instance, the tag gene cluster is well-conserved in Pseudomonas aeruginosa (Pa). The PaTagF protein has large homology with ImpM in Rhizobium leguminosarum and SciT in Salmonella enterica. The overexpression of PaTagF represses T6SS complex accumulation and suppresses T6SS antibacterial activity. Thus, the functions of TagF are mediated through direct interactions with the forkhead-associated protein Fha, as evident from the results of the yeast-two hybrid assays. Fha is involved in recruiting a membrane-associated complex either in threonine phosphorylation pathway-dependent or - independent manner. However, functional reports of the tag gene cluster are still limited. In this article, our motivation is to understand the molecular mechanism underlying the regulation of expression of the type VI secretion system complex. In this article, we start with obtaining the gene encoding PaTagF protein by polymerase chain reaction (PCR). Subsequently, the cloned gene is applied to overexpress of PaTagF protein in Escherichia coli, then purify the recombinant PaTagF protein. Thereafter, the protein is crystallized in a condition of 2.5 M NaCl, 0.1 M imidazole (pH 8.0), 3.2 M NaCl, 0.1 M BIS-TRIS propane (pH 7.0) and diffraction datasets of the PaTagF crystals are collected at the Pohang Accelerator Laboratory (PAL). The molecular structure of PaTagF protein is determined by molecular replacement using the uncharacterized protein PA0076 (PDB code:2QNU) as an initial search model by PHENIX crystallographic software package. Model building of PaTagF structure is performed using Coot program. Finally, the structural model is validated using phenix.refine program. PaTagF exists as a tetramer in the asymmetric unit, and the overall fold of each monomer is composed of continuous beta-sheets wrapped by alpha-helices. Each monomer has variable conformations and lengths of both the N- and C-termini. Twelve residues, including the His6 tag from the N-terminus of a symmetry-related molecule, have been found in two of the tetrameric PaTagF structures. A structural homology search revealed that PaTagF was similar to the α-β-α sandwichlike structure of the longin domain on the differentially expressed in normal and neoplastic (DENN) superfamily, which is commonly found in proteins related to trafficking. The tetrameric structure of PaTagF comprises varied N- and C-terminal regions in each subunit and may be stabilized by a symmetry-related molecule. This feature was also shown in the TssL structure from V. cholerae. Furthermore, our study showed that the overall fold of PaTagF is homologous to the longin domain of the DENN family. Therefore, further studies are warranted to elucidate the structure-based evolutionary relationship between protein transport systems from the bacteria and eukaryotic cells.

High-Resolution Crystal Structure of Endoplasmic Reticulum Aminopeptidase 1 with Bound Phosphinic Transition-State Analogue Inhibitor.

Endoplasmic reticulum aminopeptidase 1 (ERAP1) is an intracellular enzyme that helps generate peptides presented by Major Histocompatibility Complex Class I (MHC class I) molecules and is an emerging target for immunotherapy applications. Despite almost two decades of research on ERAP1, lack of high-resolution crystal structures has hampered drug-development efforts. By optimizing the protein construct, we obtained a high-resolution (1.60 Å) crystal structure of the closed-conformation of ERAP1 with a potent phosphinic pseudopeptide inhibitor bound in its active site. The structure provides key insight on the mechanism of inhibition as well as selectivity toward homologous enzymes and allows detailed mapping of the internal cavity of the enzyme that accommodates peptide-substrates. Bis-tris propane and malic acid molecules, found bound in pockets in the internal cavity, reveal potential druggable secondary binding sites. The ability to obtain high-resolution crystal structures of ERAP1 removes a major bottleneck in the development of compounds that regulate its activity and will greatly accelerate drug-discovery efforts.

A Capillary Electrophoresis UV Detection-Based Method for Global Genomic DNA Methylation Assessment in Human Whole Blood.

Quantitative analysis of DNA methylation patterns is of special importance in several developmental and pathological situations. The development of simple and robust methods to assess DNA methylation is required to facilitate its measurement and interpretation in clinical practice. We describe a highly reproducible CE-UV method for the separation and detection of cytosine and methylcytosine, after formic acid hydrolysis of DNA extracted from human whole blood. Hydrolyzed samples were dried and successively dissolved with water and then injected into the capillary without sample derivatization procedures. The use of a run buffer containing 50mmol/L BIS-TRIS propane (BTP) phosphate buffer at pH3.25 and 60mmol/L sodium acetate buffer at pH3.60 (4:1, v/v) allowed a baseline analytes separation within 12min. Precision tests indicated an elevated reproducibility with an inter-assay CV of 1.98%.

Low potential manganese ions as efficient electron donors in native anoxygenic bacteria

Systematic control over molecular driving forces is essential for understanding the natural electron transfer processes as well as for improving the efficiency of the artificial mimics of energy converting enzymes. Oxygen producing photosynthesis uniquely employs manganese ions as rapid electron donors. Introducing this attribute to anoxygenic photosynthesis may identify evolutionary intermediates and provide insights to the energetics of biological water oxidation. This work presents effective environmental methods that substantially and simultaneously tune the redox potentials of manganese ions and the cofactors of a photosynthetic enzyme from native anoxygenic bacteria without the necessity of genetic modification or synthesis. A spontaneous coordination with bis-tris propane lowered the redox potential of the manganese (II) to manganese (III) transition to an unusually low value (~400 mV) at pH 9.4 and allowed its binding to the bacterial reaction center. Binding to a novel buried binding site elevated the redox potential of the primary electron donor, a dimer of bacteriochlorophylls, by up to 92 mV also at pH 9.4 and facilitated the electron transfer that is able to compete with the wasteful charge recombination. These events impaired the function of the natural electron donor and made BTP-coordinated manganese a viable model for an evolutionary alternative.