Biotic Group Research Articles

Use of trait concepts and terminology in freshwater ecology: Historic, current, and future perspectives

Abstract Trait‐based approaches have received increasing interest among freshwater scientists given their capacity to predict community structure and biodiversity effects on ecosystem functioning. However, the inconsistent development and use of trait concepts and terms across freshwater scientific disciplines may have limited realisation of the potential of traits. Here, we reviewed trait definitions and terms use to provide recommendations for their consistent application in freshwater science. To do so, we first reviewed literature to identify established trait definitions, historical and current use of trait terms and challenges restricting the application of trait‐based approaches in freshwater science. Next, we surveyed 414 freshwater researchers from 54 countries to assess variability in the current use of trait terminology in relation to respondent characteristics (i.e., professional experience, geographical region, research discipline, and focal freshwater ecosystem, biotic group, and ecosystem function). Our literature review identified two well‐established trait definitions, which emphasise individual phenotypic characteristics that influence either eco‐evolutionary aspects (i.e., organism performance and fitness) or ecosystem dynamics and processes (i.e., responses to the environment and/or effects on ecosystem functioning). Publications used a range of trait‐related terms and their frequency of use varied among scientific fields. The term functional trait dominated fields such as biodiversity conservation, environmental sciences and ecology, plant sciences and microbiology. In contrast, the terms biological trait, functional trait, and species trait were used with similar frequencies in fields such as entomology, fisheries, marine and freshwater biology, and zoology. We also found that well‐established trait definitions are difficult to apply to freshwater unicellular organisms, colonial multicellular organisms, genomic information, and cultural traits. Our survey revealed highly inconsistent use of trait terms among freshwater researchers. Terms including biological trait, functional trait, structural measure, and ecosystem function were commonly used to describe the same traits or functions. Variability in the use of terms was generally explained by research discipline, geographical region, and focal biotic group and ecosystem functions. We propose making the trait concept flexible enough to be applicable to all freshwater biota and their characteristics, while keeping and integrating links to eco‐evolutionary and ecosystem aspects. Specifically, our new definition expands the established functional trait definition by considering also supra‐individual scales of trait measurement (colonial‐ or community‐mean traits), genotypic traits (e.g., functional gene markers of enzymes) and cultural traits (e.g., feeding behaviours, communication skills). To reduce terminological ambiguity, we also recommend that researchers define trait terms, prioritising the use of functional trait as an overarching term over alternative terms (e.g., biological trait), and restricting specific terms (e.g., morphological trait) to situations in which such precision is desirable. The findings of our integrative study could help to improve terminological consistency across freshwater disciplines and to better recognise the potential of traits to elucidate the mechanisms behind ecological patterns.

Disentangling responses to natural stressor and human impact gradients in river ecosystems across Europe

Abstract Rivers are dynamic ecosystems in which both human impacts and climate‐driven drying events are increasingly common. These anthropogenic and natural stressors interact to influence the biodiversity and functioning of river ecosystems. Disentangling ecological responses to these interacting stressors is necessary to guide management actions that support ecosystems adapting to global change. We analysed the independent and interactive effects of human impacts and natural drying on aquatic invertebrate communities—a key biotic group used to assess the health of European freshwaters. We calculated biological response metrics representing communities from 406 rivers in eight European countries: taxonomic richness, functional richness and redundancy, and biomonitoring indices that indicate ecological status. We analysed metrics based on the whole community and a group of taxa with traits promoting resistance and/or resilience (‘high RR’) to drying. We also examined how responses vary across Europe in relation to climatic aridity. Most community metrics decreased independently in response to impacts and drying. A richness‐independent biomonitoring index (the average score per taxon; ASPT) showed particular potential for use in biomonitoring, and should be considered alongside new metrics representing high RR diversity, to promote accurate assessment of ecological status. High RR taxonomic richness responded only to impacts, not drying. However, these predictors explained little variance in richness and other high RR metrics, potentially due to low taxonomic richness. Metric responsiveness could thus be enhanced by developing region‐specific high RR groups comprising sufficient taxa with sufficiently variable impact sensitivities to indicate ecological status. Synthesis and applications. Metrics are needed to assess the ecological status of dynamic river ecosystems—including those that sometimes dry—and thus to identify priority sites requiring action to tackle the causes of environmental degradation. Our results inform recommendations guiding the development of such metrics. We propose concurrent use of richness‐independent ‘average score per taxon’ indices and metrics that characterize the richness of resistant and resilient taxa. We observed interactions between aridity, impacts and drying, highlighting that these new metrics should be region specific, river type specific and adaptable, promoting their ability to inform management actions that protect biodiversity in river ecosystems responding to climate change.

Magnetite drives self-dechlorination of 4-chlorophenol in anoxic aquatic sediments

The lack of available electron donors is well known as a major factor limiting the efficiency of microbial dechlorination of 4-chlorophenol (4-CP) in anoxic aquatic sediments. Considering that Fe(III) minerals largely contained in sediments can especially enrich Fe(III)-reducing bacteria and unlock the ring-like intermediates produced by dechlorination of 4-CP via dissimilatory Fe(III) reduction, a strategy of self-dechlorination of 4-CP utilizing its metabolism intermediates such as short-fatty acids (SCFAs) as the endogenous electron donors with magnetite was proposed in this study. The results showed that the removal efficiency of 4-CP increased by 156–203% in magnetite-supplemented biotic groups compared with the magnetite-free biotic group. Liquid chromatography-mass spectrometer (LC-MS) and gas chromatography (GC) revealed the possible metabolic pathway of anoxic 4-CP degradation with magnetite: 4-CP→phenol→cyclohexene-1-carboxylic acid→2-hydroxycyclohexanecarboxylic acid→hexanoic acid/valeric acid→butyric/propionic acids→CO2. High-throughput sequencing analysis showed that the abundance of functional bacteria, Desulfuromonas, Pseudomonas and Bacillus species, were increased by 1.38–1.97, 1.50–2.04, and 11.60–17.18 folds in magnetite-supplemented biotic groups, compared with the magnetite-free biotic groups. Analysis of Fe2+ concentration and cyclic voltammetry (CV) suggested that the potential Fe(III)/Fe(II) transformation occurred and proceeded the anoxic 4-CP degradation continuously.

Functional rather than taxonomic diversity reveals changes in the phytoplankton community of a large dammed river

River damming reduces the dispersal rates of biota and filter species by altering the local environmental conditions. Although phytoplankton is a key biotic group to indicate changes in aquatic environments, the effects of river damming on the longitudinal distribution of phytoplankton communities are not widely addressed. Here we investigated the changes on the taxonomic and functional composition of the phytoplankton community in a large tropical dammed river. We expect compositional changes to be higher at taxonomic than functional level especially in the dam-free stretches of the river because running waters select species able to cope with the water turbulence. Furthermore, flow regulation allows species with different traits to colonize the increasingly lentic stretches resulting in higher functional diversity towards dams. Phytoplankton samples were taken in 210 sites, spaced by 5 km, along the whole river channel. Data were split at a reservoir level considering the sites within 30 km before and after each dam to analyze the effects of damming on the community composition. Compositional changes were assessed by estimating the degree to which each community differed from all other communities within the regional pool (community distinctiveness) considering taxonomic and functional composition separately. Functional diversity was estimated as the degree to which species within the same community differed from each other with respect to their trait composition (functional dispersion). We used community-weighted means to test how the different traits were filtered by river damming. Furthermore, we assessed the effects of local environmental conditions on the phytoplankton taxonomic and functional composition using boosted regression trees (BRT). We observed no effects of river damming on species dispersal. Functional turnover was low, suggesting that compositional changes occurred mainly among functionally similar species. However, there was a noticeable reduction of phytoplankton diversity that persisted for more than 100 km after one of the dams. Flow regulation allowed flagellated and mucilaginous species to colonize the dammed areas. After the dams, such species were filtered due to the increase of water mixing downstream, as evidenced by a hump-shaped trend in the functional diversity of the sites within 30 km distance of the dams. BRT analyses highlighted the role of nutrient input in the dammed areas for the community compositional change. This study highlights the importance of considering both taxonomical and functional diversity to describe the effects of human intervention such as damming on aquatic ecosystems.

Model-based ecological optimization of vertical slot fishways using macroinvertebrates and multispecies fish indicators

Fishway research has long focused on post-establishment assessments to optimize fish passage efficiency. Model-based optimization with the use of hydrodynamic-habitat models (HHMs) has rarely been employed to investigate passage suitability based on key hydraulic variables. In this study, a vertical slot fishway was designed, the hydraulic properties of twelve types that varied by slope, slot width and pool size were simulated using a two-dimensional HHM, and the suitability of macroinvertebrates and of seven fish groups, encompassing various guilds and size classes, was assessed for each fishway type at seven discharge scenarios, ranging from 0.1 m3/s to 1.3 m3/s. Suitability was primarily influenced by water depth. At optimal depths, suitability was fine-tuned by flow velocity to different optima per biotic group based on fixed interplays between discharge, slope and slot width: water depths were higher at high discharges, low slopes and narrow slots; flow velocities were higher at high discharges, high slopes and wide slots. Our ecologically optimal, multispecies, vertical slot fishway, had 5% slope and 30-cm wide slots, with discharges shifting between 0.15 m3/s and 0.6 m3/s to balance the needs of all species and life stages studied. Yet, even this optimal fishway could not guarantee 100% suitability for all species. The overall suitability was moderate (approx. 50–60%), higher at the pools and lower at the slots, and critically influenced by the type of substrate. We conclude that technical fishways cannot be simultaneously ideal for all species and life stages of a river reach/basin, due to the often-contrasting habitat preferences that need to be adapted to fixed interplays of hydraulic conditions. Within these limitations, however, model-based ecological pre-optimization is crucial for optimizing and deploying fishways that will guarantee suitable passage routes for a wide range of species and life stages, ultimately restoring the hydromorphological and ecological connectivity of dammed rivers.

Apprendre l’énergie avec des systèmes biotiques

The aim of this study is to observe the effect of the use of biotic systems (related to living being) in a teaching focused on task where students should draw energy chain. According to the activity theory, we consider the use of biotic system as a part of the situation where the student’s activity system takes place. We design an experimental protocol in order to isolate the task condition among this situation (teacher, teaching sequence, group of students...). This protocol is based on the separation of two group of students (biotic and domestic). The two groups assist to similar teaching sequence (with the use of domestic systems only or domestic and biotic systems) with the same teacher. The results show that students from the biotic group progress more after the teaching. They also show the same trends in the 4 protocol.

Belowground Biodiversity Relates Positively to Ecosystem Services of European Forests

Biodiversity of ecosystems is an important driver for the supply of ecosystem services to people. Soils often have a larger biodiversity per unit surface area than what can be observed aboveground. Here, we present what is to our knowledge, the most extensive literature-based key-word assessment of the existing information about the relationships between belowground biodiversity and ecosystem services in European forests. The belowground diversity of plant roots, fungi, prokaryota, soil fauna, and protists was evaluated in relation to the supply of Provisioning, Regulating, Cultural, and Supporting Services. The soil biota were divided into 14 subgroups and the ecosystem services into 37 separate services. Out of the 518 possible combinations of biotic groups and ecosystem services, no published study was found for 374 combinations (72%). Of the remaining 144 combinations (28%) where relationships were found, the large majority (87%) showed a positive relationship between biodiversity of a belowground biotic group and an associated ecosystem service. However, for the majority of the combinations (102) there were only three or fewer studies. The percentage of cases for which a relationship was detected varied strongly between ecosystem service categories with 23% for Provisioning, 8% for Regulating, 40% for Cultural, and 48% for Supporting Services. We conclude that (1) soil biodiversity is generally positively related to ecosystem services in European forests; (2) the links between soil biodiversity and Cultural or Supporting services are better documented than those relating to Provisioning and Regulating services; (3) there is a huge knowledge gap for most possible combinations of soil biota and ecosystem services regarding how a more biodiverse soil biota is associated with a given ecosystem service. Given the drastically increasing societal demand for knowledge of the role of biodiversity in the functioning of ecosystems and the supply of ecosystem services, we strongly encourage the scientific community to conduct well-designed studies incorporating the belowground diversity and the functions and services associated with this diversity.

Multiple abiotic and biotic drivers of aboveground biomass shift with forest stratum

Insights into the underlying ecological mechanisms for diversity-biomass relationships across forest strata (i.e., overstorey and understorey) are crucial to understand the importance of vertical stratification on ecosystem function in natural forests. Yet, it remains unclear how multiple abiotic (i.e., soil nutrients) and biotic (i.e., biodiversity, functional identity and stand structural complexity) factors simultaneously determine aboveground biomass in each individual forest stratum and whole-community. To address this knowledge gap, we disentangled the relative effects of soil nutrients (soil fertility hypothesis), taxonomic, functional trait and evolutionary diversity (niche complementarity hypothesis), stand structural complexity (niche differentiation hypothesis based on tree sizes), and community-weighted mean trait values (mass ratio hypothesis) on aboveground biomass across forest strata and whole-community. We used forest inventory, functional traits and environmental factors datasets from 125 subtropical forest plots in Eastern China. Multiple linear regression models were performed for the selection of best predictors within each biotic group, and structural equation modelling was used to evaluating how multiple abiotic and biotic drivers determine aboveground biomass. In the overstorey, aboveground biomass was positively related to the community-weighted mean of tree height (i.e., functional dominance) and stand density but was negatively related to functional evenness on nutrient-rich soils. In the understorey, aboveground biomass was positively related to phylogenetic species richness and stand-level tree mean diameter (i.e., a proxy for forest growth) but was negatively related to Shannon’s species diversity on nutrient-poor soils. Understorey aboveground biomass was also determined by overstorey stand structure and functional dominance through direct and indirect effects via understorey biotic drivers. These results suggest that functional dominance and stand structural complexity are the main biotic drivers of overstorey aboveground biomass. Whereas, functional dominance and stand structural complexity of overstorey, soil nutrients, and niche complementarity among understorey species with the conservative strategy determine understorey aboveground biomass. Whole-community aboveground biomass might be resulting from the superior role of overstorey functional dominance. This study highlights that the niche complementarity, mass ratio and soil nutrients effects are important for driving aboveground biomass, but in different ways across overstorey and understorey strata in natural subtropical forests. We argue that the relative effect of biodiversity loss on aboveground biomass depends critically on the functional and evolutionary identity of the lost species in the specific forest stratum. Better insights can be gained into forest management and biodiversity conservation by considering overstorey and understorey strata separately in complex natural forests.

Spatial and taxonomic variation of mercury concentration in low trophic level fauna from the Mediterranean Sea.

Studies of mercury (Hg) in the Mediterranean Sea have focused on pollution sources, air-sea mercury exchange, abiotic mercury cycling, and seafood. Much less is known about methylmercury (MeHg) concentrations in the lower food web. Zooplankton and small fish were sampled from the neuston layer at both coastal and open sea stations in the Mediterranean Sea during three cruise campaigns undertaken in the fall of 2011 and the summers of 2012 and 2013. Zooplankton and small fish were sorted by morphospecies, and the most abundant taxa (e.g. euphausiids, isopods, hyperiid amphipods) analyzed for methylmercury (MeHg) concentration. Unfiltered water samples were taken during the 2011 and 2012 cruises and analyzed for MeHg concentration. Multiple taxa suggested elevated MeHg concentrations in the Tyrrhenian and Balearic Seas in comparison with more eastern and western stations in the Mediterranean Sea. Spatial variation in zooplankton MeHg concentration is positively correlated with single time point whole water MeHg concentration for euphausiids and mysids and negatively correlated with maximum chlorophyll a concentration for euphausiids, mysids, and "smelt" fish. Taxonomic variation in MeHg concentration appears driven by taxonomic grouping and feeding mode. Euphausiids, due to their abundance, relative larger size, importance as a food source for other fauna, and observed relationship with surface water MeHg are a good candidate biotic group to evaluate for use in monitoring the bioavailability of MeHg for trophic transfer in the Mediterranean and potentially globally.

Linking marine ecosystems with the services they supply: what are the relevant service providing units?

Marine ecosystems support supply of ecosystem services (ESs) through processes and functions carried out by diverse biological elements. Managing sustainability of ES use requires linking services to the parts of ecosystems supplying them. We specified marine service providing units (SPUs) as plausible combinations of a biotic group (e.g., bacteria, seabirds) with an associated major habitat (e.g., sublittoral sediment). We developed a network model for large marine ecosystems, documenting 2,916 links between 153 SPUs with 31 services. Coastal habitats and their taxa accounted for 48% of links, but all habitats with their taxa contribute to at least 20 ESs. Through network analysis, we showed some services link to certain key habitats, while others are less clearly defined in space, being supported by a variety of habitats and their taxa. Analysis highlighted large-scale flows across marine habitats that are essential in underpinning continued supply of certain ESs, for example, seed dispersal. If we only protect habitats where services are used, we will not fully protect the supply of services reliant on mobile taxa moving between habitats. This emerged because we considered habitats and their taxa together. We recommend using combinations of habitats and taxa as SPUs when informing marine ecosystem management and conservation.

Effects of spawning Atlantic salmon (Salmo salar) on total lipid content and fatty acid composition of river food webs

AbstractReturning Atlantic salmon subsidize rivers with marine‐derived nutrients (MDNs), potentially altering food web dynamics, shifting to reliance on marine‐derived resources. Stream channels designed to simulate natural river systems, one with MDNs from spawning Atlantic salmon (Salmo salar) and one without marine‐nutrient subsidies (control), were used to determine whether fatty acids (FAs) delivered to rivers and streams by spawning Atlantic salmon are incorporated by freshwater biota. Changes in FA profiles between stream channels with and without MDN inputs for biofilm, macroinvertebrates, and Atlantic salmon parr were used to characterize temporal dynamics of MDN incorporation during pre‐spawning, spawning, and post‐spawning periods. There were no differences between control and treatment stream channels prior to the addition of Atlantic salmon. Spawning Atlantic salmon had a positive effect on total lipid content in all trophic levels (biofilm, 4.33%; macroinvertebrates, 7.54%; salmon parr, 2.59%), relative to controls. Fatty acid profiles between the MDN treatment and control stream channels were similar for each biotic group prior to the introduction of adult Atlantic salmon; however, following adult salmon introductions, the FA profiles of the biofilm, invertebrates, and salmon parr differed by as much as 36.7%, 30.3%, and 22.9%, respectively, between the MDN treatment stream channels and the controls. Fatty acid profiles of the invertebrates and salmon parr from the MDN treatment stream channels tracked the FA profile of the salmon eggs. Proportions of docosahexaenoic acid and eicosapentaenoic acid varied with diet in a predictable manner related to dietary FA proportions. These responses demonstrate a change in the food web structure resulting from the establishment of this new, marine‐based, basal resource. The positive effects of MDNs increasing freshwater productivity are complimented by marine‐based lipids that represent surplus energy and an increase in the quality of resources, thereby contributing to the diversity and health of freshwater ecosystems.

Contrasting intra-annual patterns of six biotic groups with different dispersal mode and ability in Mediterranean temporary ponds

The temporal patterns of six biotic groups (from phytoplankton to amphibians) and their responses to environmental variation were studied in a set of Mediterranean temporary ponds. These biotic groups differed widely in dispersal ability and dispersal mode (active v. passive) and, for this reason, we predicted that they would exhibit different temporal patterns and responses to environmental factors. Six temporary ponds were sampled three times: at the beginning (January), middle (March) and end (May) of the hydroperiod. For each biotic group, we evaluated temporal variation in composition, species richness, among-pond similarities and number of typifying taxa. Moreover, a β diversity partitioning procedure was used to obtain the relative contributions of the replacement and richness components to overall β diversity. Finally, the effects of water, pond and landscape variables on composition and taxa richness were analysed for each group. Different temporal patterns were observed among the biotic groups studied, and in some (but not all) cases these differences were explained by their dispersal ability. Similarly, we observed that environmental control was group specific. These results advance the notion that communities in Mediterranean temporary ponds are highly variable over time and that generalisations with regard to patterns and controls across taxonomic groups are not supported.

Unravelling the joint effects of flow regime, climatic variability and dispersal mode on beta diversity of riverine communities

Summary Differences in the composition of ecological communities among rivers with contrasting flow regimes have been detected in many regions worldwide. However, we know little of how climatic variation alters these spatial patterns for constituent species with varying dispersal modes and strengths. We predicted that beta diversity (spatial variation in composition) of macroinvertebrate and fish assemblages among streams with near‐perennial, mildly intermittent and highly intermittent flow regimes would be greater during prolonged drought than under wetter climate conditions. We hypothesised that changes in beta diversity between these climate phases would be greater for taxa with stronger dispersal ability. We tested these predictions with biomonitoring data from Australian subtropical rivers. Differences in average community composition among flow regimes were statistically significant for six groups of macroinvertebrates with differing dispersal (non‐swimmers, weak swimmers, strong swimmers, non‐fliers, weak fliers and strong fliers) and two groups of fish (potamodromous and diadromous), but not for locally dispersing fish. For each of these biotic groups, shifts in assemblage composition between supra‐seasonal drought and a subsequent non‐drought period were either statistically non‐significant or of similar magnitude among flow regimes. Therefore, beta diversity among flow regimes did not change significantly with climate phase. Beta diversity within flow‐regime classes was greater during the drought than afterwards or not significantly different between climate phases, depending on the flow regime and biotic group. Stronger powers of flight were associated with greater change in beta diversity between climate phases in near‐perennial streams, but stronger powers of swimming were not. Within‐regime beta diversity was driven more by replacement of taxa among samples than by nestedness, except for diadromous fish in near‐perennial streams. Our findings are consistent with the hypothesis that decreasing hydrological connectivity and greater environmental heterogeneity during prolonged drought increase beta diversity of stream communities. However, changes in beta diversity between climate phases were not as pronounced as we expected. The communities may have been somewhat drought resistant because the magnitude and duration of the drought were within the range of historical variability and because surface water persisted at study sites during drought‐imposed flow cessations. Our findings suggest that maintenance of refuge pools will be critical to lessening drought impacts on river biodiversity at landscape scales, particularly if drought duration and intensity increase in the future.

Effects of land use on taxonomic and functional diversity: a cross-taxon analysis in a Mediterranean landscape.

Land-use change is the major driver of biodiversity loss. However, taxonomic diversity (TD) and functional diversity (FD) might respond differently to land-use change, and this response might also vary depending on the biotic group being analysed. In this study, we compare the TD and FD of four biotic groups (ants, birds, herbaceous, woody vegetation) among four land-use types that represent a gradient of land-use intensity in a Mediterranean landscape (Mediterranean shrublands, dehesas, mixed-pine forests, olive groves). Analyses were performed separately at two different spatial scales: the sampling unit scale and the site scale. Land-use intensity effects on TD and FD were quite different and highly varied among the four biotic groups, with no single clear pattern emerging that could be considered general for all organisms. Additive partitioning of species diversity revealed clear contrasting patterns between TD and FD in the percentage of variability observed at each spatial scale. While most variability in TD was found at the larger scales, irregardless of organism group and land-use type, most variability in FD was found at the smallest scale, indicating that species turnover among communities is much greater than functional trait turnover. Finally, we found that TD and FD did not vary consistently, but rather followed different trajectories that largely depended on the biotic group and the intensity of land-use transformation. Our results highlight that the relationship of land use with TD and FD is highly complex and context-dependent.

Climatic fluctuations and sea-surface water circulation patterns at the end of the Cretaceous era: Calcareous nannofossil evidence

New paleoecological data are presented for late Maastrichtian calcareous nannofossil assemblages of the Indian Ocean and the Boreal epicontinental Chalk Sea. These data are compiled with recent results in the tropical Atlantic, Pacific, and Tethys oceans in order to characterize environmental changes by the end of the Cretaceous era. The paleobiogeographic distribution of the warm-water species Micula murus is updated and indicates the existence of major sea-surface currents in the late Maastrichtian Atlantic Ocean similar to the present day. The end-Maastrichtian greenhouse warming is characterized at tropical and subtropical latitudes by an increase in abundance of M. murus and the temporary disappearance of the high-fertility marker Biscutum constans. In the Boreal realm, the greenhouse episode is marked by a contemporaneous acme of Watznaueria barnesiae coincident with very rare occurrences of M. murus and other tropical nannofossil species which have never been reported before at boreal latitudes. A review of cyclostratigraphic and calcareous nannofossil data in the Atlantic, Pacific, Indian, and Tethys oceans points to the following evolution of sea-surface paleotemperatures for the last ca. 350–380kyr of the Cretaceous: the end-Maastrichtian greenhouse warming lasted on average a little more than 200kyr and was followed by a ca. 100–120kyr cooling. In the Tethys, a 30–40kyr additional pulse of warming is highlighted immediately below the Cretaceous–Paleogene boundary. These findings indicate an important instability of the climate system at the end of the Maastrichtian, most likely caused by Deccan volcanism. The calcareous nannofossil species richness dropped during the end-Maastrichtian greenhouse warming, which may indicate environmental stress and/or ocean acidification. However, nannoplankton diversity returned rapidly to higher values after this climatic episode and remained high up to the Cretaceous–Paleogene boundary. No significant extinction is recorded in this biotic group prior to the boundary clay.

Microbially Induced Precipitation of Strontianite Nanoparticles.

The objectives of this study were to investigate the microbially mediated precipitation of strontium by microorganisms, and to examine the mineralogical characteristics of the precipitates. Wu Do-1 (Proteus mirabilis) enriched from rhodoliths was used to precipitate strontium at room temperature under aerobic environment. The growth of Wu Do-1 gradually increased over 16 days (OD600 = 2.6) and then decreased until 22 days (OD600 = 2.0) during microbial incubation for strontium precipitation. Also, the pH decreased from 6.5 to 5.3 over 4 days of incubation due to microbial oxidation of organic acids, and then the pH increased up to 8.6 at 25 days of incubation due to NH3+ generation. The Sr2+ concentration in the biotic group sharply decreased from 2,953 mg/L to 5.7 mg/L over 29 days of incubation. XRD, SEM-/TEM-EDS analyses revealed that the precipitates formed by Wu Do-1 (Proteus mirabilis) were identified as 20-70 nm sized strontianite (SrCO3). Therefore, these results suggested that formation of sparingly soluble Sr precipitates mediated by Wu Do-1 (Proteus mirabilis) sequesters strontium and carbon dioxide into a more stable and less toxic form such as strontianite (SrCO3). These results also suggest that bioremediation of metal-contaminated water and biominealization of carbonate minerals may be feasible in the marine environment.

Can macrophytes be a surrogate for amphibians and physico-chemical features in pond classifications?

Our primary goal was to test how consistently macrophytes, physico-chemical features and amphibians classify pond sites, by applying a measure of classification strength based on a set of cross-tests performed with randomisation protocols. Finally, we used ordination methods to identify the major environmental factors correlated with each biotic group. Significant results of concordance and higher values of relative classification strength were obtained at two (or more) cut levels, when the plant classification was performed on amphibians and on physico-chemical characteristics. Significant results and higher values of relative classification strength were also obtained at a cut level when the amphibian classification was performed on physico-chemical features. The ordination analyses revealed that plants and amphibians were affected by the same pond features, mainly conductivity, size and depth. Ponds with high conductivity were dominated by tall emergent plants of the genus Typha and were the preferential sites for Bufo bufo. Smaller shallow ponds with small emergent plants seemed instead to favour Rana dalmatina. Deep ponds with low conductivity were mostly occupied by floating and submerged plants, such as Potamogeton natans and Chara hispida, and hosted newts (Triturus carnifex and T. vulgaris), probably because the latter depend on well structured vegetation with submerged plants for egg deposition. These results suggest that pond ecosystems have “two levels of influence”, and that plants are the “middle level” between environmental features and amphibian assemblages, since they are directly influenced by the former and directly influence the latter. It is probably by virtue of this intermediate position that the classification of ponds based on plant assemblages can be used as a surrogate for predicting environmental features and the presence of amphibian species of conservation interest, in order to preserve their habitat through preliminary and cost-effective assessments. Given the ongoing threats to ponds, these findings are important for their protection, and better understanding of the ecological preferences of various plant and amphibian species is useful for planning management and conservation strategies.

Predictors of fine-scale spatial variation in soil mite and microbe community composition differ between biotic groups and habitats

Soils support highly diverse communities, but due to the great spatial complexity at very fine scales and small size of soil organisms, our knowledge of what structures belowground communities remains limited. We used a spatially nested sampling regime (distances between samples of 0.06–122 m) to develop an understanding of the relationship between soil mite and microbial community composition and properties of vegetation and underlying soil within two habitats: birch woodland and heather moorland. We found that variation in community composition of all four biotic groups investigated (Oribatida, Mesostigmata, fungi and bacteria – thus representing multiple trophic levels) was related to variation in soil properties and vegetation, but also space. These three factors (i.e. vegetation, soil properties and space) accounted for 17–36% of the variation in community composition of the biotic groups. The remaining, rather large, proportion of unexplained variation in community composition (64–87%) is likely to represent either random variation or variation related to unmeasured variables that are not spatially auto-correlated. Soil properties generally explained more variance in belowground communities than could vegetation composition. This should not be interpreted as evidence that soil properties exert a greater influence on belowground communities than vegetation composition per se , as the vegetation composition within a habitat is likely to vary at a larger spatial scale than the soil properties we measured. Vegetation composition had stronger explanatory power in the birch woodland and was more strongly related to fungal community composition than that of any other biotic group, particularly in heather moorland. This relationship may reflect the strong association between plants and their fungal symbionts and pathogens. We conclude that both vegetation composition and variation in soil properties influence belowground communities. However, the relative importance of these two factors depends on both habitat and the type of organism being studied.

Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity–function relationships

Biodiversity and carbon (C) cycling have been the focus of much research in recent decades, partly because both change as a result of anthropogenic activities that are likely to continue. Soils are extremely species‐rich and store approximately 80% of global terrestrial C. Soil organisms play a key role in C dynamics and a loss of species through global changes could influence global C dynamics. Here, we synthesize findings from published studies that have manipulated soil species richness and measured the response in terms of ecosystem functions related to C cycling (such as decomposition, respiration and the abundance or biomass of decomposer biota) to evaluate the impact of biodiversity loss on C dynamics. We grouped studies where one or more biotic groups had been manipulated to include a richness of ≤10 species or >10 species in order to reflect ‘low’ and ‘high’ extents of diversity manipulations. There was a positive relationship between species richness and C cycling in 77–100% of low‐diversity experiments, even when the richness of just one biotic group was manipulated, whereas positive relationships occurred less frequently in studies with greater richness (35–64%). Moreover, when positive relationships were observed, these often indicated functional redundancy at low extents of diversity or that community composition had a stronger influence on C cycling than did species richness. Initial reductions in soil species richness resulting from global changes are unlikely to alter C dynamics significantly unless particularly influential species are lost. However, changes in community composition, and the loss of species with an ability to facilitate specialized soil processes related to C cycling, as a result of global changes, may have larger impacts on C dynamics.

Differences in bioregional classifications among four aquatic biotic groups: Implications for conservation reserve design and monitoring programs

Bioregional classifications are used extensively for conservation management and monitoring programs. This study used generalised dissimilarity modelling (GDM) to test the ability of different regional classifications of four groups of aquatic biota to be used as surrogates for each other. Classifications were derived for aquatic macrophytes, macroinvertebrates, freshwater fish and frogs using community-level modelling, or GDM, which relates the biotic assemblage structure with environmental variables. Six regions were defined for each biotic group for the State of New South Wales. Regional classifications differed markedly between the different biotic groups because the environmental drivers that were related to species turnover throughout the region differed among groups. Altitude and rainfall were the strongest drivers of species turnover among the groups. Results suggest that physiographic variables should be incorporated in reserve design and monitoring programs to explicitly address differences in classifications between similar biotic groups.