AbstractLater spring termination of fall‐planted cover crops can result in more biomass production, which has the potential to improve environmental benefits. However, later cover crop termination can also have the potential to harm cash crops, such as through increases in corn seedling disease. With the objective of better understanding such potential competing interactions, we evaluated the impact of early and late termination timing of two cover crops—cereal rye (Secale cereale L.) and hairy vetch (Vicia villosa Roth.)—on growth, seedling disease, and grain yield of corn in 2021 and 2022 in Nebraska. The total biomass production varied among treatments. Hairy vetch biomass was lower than cereal rye biomass at both termination times in 2021, but not different from cereal rye terminated early in 2022. Radicle root rot severity, a symptom of corn seedling disease, was not affected by cover crops in 2021. In 2022, however, radicle root rot was most severe in cereal rye terminated late treatments. Hairy vetch did not affect radicle root rot severity, regardless of termination time. Late termination of cereal rye resulted in a reduction in corn yield of 15.3% in 2021 and 76.1% in 2022 compared to no cover crop. Corn (Zea mays L.) grain yield was not affected following hairy vetch at either termination timing. Our results suggest that corn planted following late‐terminated cereal rye can increase the severity of root rot and decrease corn grain yield; however, planting green into hairy vetch can be a successful option to increase biomass without increasing corn seedling disease or decreasing corn yield.