Biological Carbon Research Articles

Remote 3D Imaging and Classification of Pelagic Microorganisms with A Short‐Range Multispectral Confocal LiDAR

AbstractPlankton is essential to maintain healthy aquatic ecosystems since it influences the biological carbon pump globally. However, climate change‐induced alterations to oceanic properties threaten planktonic communities. It is therefore crucial to monitor their abundance to assess the health status of marine ecosystems. In situ optical tools unlock high‐resolution measurements of sub‐millimeter specimens, but state‐of‐the‐art underwater imaging techniques are limited to fixed and small close‐range volumes, requiring the instruments to be vertically dived. Here, a novel scanning multispectral confocal light detection and ranging (LiDAR) system for short‐range volumetric sensing in aquatic media is introduced. The system expands the inelastic confocal principle to multiple wavelength channels, allowing the acquisition of 4D point clouds combining near‐diffraction limited morphological and spectroscopic data that is used to train artificial intelligence (AI) models. Volumetric mapping and classification of microplastics is demonstrated to sort them by color and size. Furthermore, in vivo autofluorescence is resolved from a community of free‐swimming zooplankton and microalgae, and accurate spectral identification of different genera is accomplished. The deployment of this photonic platform alongside AI models overcomes the complex and subjective task of manual plankton identification and enables non‐intrusive sensing from fixed vantage points, thus constituting a unique tool for underwater environmental monitoring.

Euphotic Zone Residence Time of Antarctic Bottom Water

AbstractAntarctic Bottom Water (AABW) transports surface nutrients deep into the ocean, sequestering them for centuries. Enhancing its biological carbon fixation could augment carbon sinks and reduce atmospheric CO2. Yet, it is uncertain if AABW receives enough light for significant photosynthesis before subducting. Using Lagrangian particle tracking in an ocean sea‐ice model, we found: (a) 70% (66%–73%, depending on euphotic zone (Zeu) criteria) nutrient rich circumpolar deep water never enters the Zeu before becoming AABW. This percentage varies from 70% to 91%, depending on the mixed layer (ML) parameterization adjustments; (b) The remaining particles in the euphotic zone have 39 (34–49, depending on Zeu criteria) days average residence time. The time is not sensitive to ML parameterization strength but turning it off doubles the time; and (c) AABW is mainly exposed to enough light on the Antarctic continental shelf during spring and summer. We conclude that the potential of biotic carbon sequestration in AABW is highly limited by light energy.

Electrochemical ocean iron fertilization and alkalinity enhancement approach toward CO2 sequestration

Achieving net-zero emissions by 2050 requires the development of effective negative emission techniques, including ocean-based approaches for CO2 sequestration. However, the implementation and testing of marine CO2 removal (mCDR) techniques such as ocean iron fertilization (OIF) or ocean alkalinity enhancement (OAE) face significant challenges. Herein, a novel self-operating electrochemical technology is presented that not only combines OIF and OAE, but also recovers hydrogen gas (H2) from seawater, hence offering a promising solution for achieving quantifiable and transparent large-scale mCDR. Experimental results show that the electrochemical OIF (EOIF) can not only increase the concentration of ferrous iron (Fe+2) by 0–0.5 mg/L, but also significantly increases the seawater pH by 8% (i.e., a 25% decrease in the hydrogen ions concentration). The release of iron (Fe+2/Fe+3) can be regulated by adjusting the magnitude of the electric current and its form (e.g., pulsed current and polarity reversal), as well as by optimizing the electrode material and geometry. In certain ocean regions, enhanced iron concentrations stimulate the naturally occurring biological carbon pump (BCP), leading to increased phytoplankton growth, CO2 uptake, and subsequent export of carbon to the deep ocean. Simultaneously, the system increases seawater alkalinity and the buffer capacity, enhancing CO2 solubility and storage in the shallow ocean through the solubility pump. The obtained measurements demonstrate the scalability of EOIF and its ability to operate using solar energy at a lower cost. Overall, the proposed EOIF technology offers a practical, effective, and sustainable solution for addressing climate change on a large scale.

Metabarcoding reveals potentially mixotrophic flagellates and picophytoplankton as key groups of phytoplankton in the Elbe estuary

In estuaries, phytoplankton are faced with strong environmental forcing (e.g. high turbidity, salinity gradients). Taxa that appear under such conditions may play a critical role in maintaining food webs and biological carbon pumping, but knowledge about estuarine biota remains limited. This is also the case in the Elbe estuary where the lower 70 km of the water body are largely unexplored. In the present study, we investigated the phytoplankton composition in the Elbe estuary via metabarcoding. Our aim was to identify key taxa in the unmonitored reaches of this ecosystem and compare our results from the monitored area with available microscopy data. Phytoplankton communities followed distinct seasonal and spatial patterns. Community composition was similar across methods. Contributions of key classes and genera were correlated to each other (p < 0.05) when obtained from reads and biovolume (R2 = 0.59 and 0.33, respectively). Centric diatoms (e.g. Stephanodiscus) were the dominant group - comprising on average 55 % of the reads and 66–69 % of the biovolume. However, results from metabarcoding imply that microscopy underestimates the prevalence of picophytoplankton and flagellates with a potential for mixotrophy (e.g. cryptophytes). This might be due to their small size and sensitivity to fixation agents. We argue that mixotrophic flagellates are ecologically relevant in the mid to lower estuary, where, e.g., high turbidity render living conditions rather unfavorable, and skills such as phagotrophy provide fundamental advantages. Nevertheless, further findings - e.g. important taxa missing from the metabarcoding dataset - emphasize potential limitations of this method and quantitative biases can result from varying numbers of gene copies in different taxa. Further research should address these methodological issues but also shed light on the causal relationship of taxa with the environmental conditions, also with respect to active mixotrophic behavior.

Rhizobia–diatom symbiosis fixes missing nitrogen in the ocean

Nitrogen (N2) fixation in oligotrophic surface waters is the main source of new nitrogen to the ocean1 and has a key role in fuelling the biological carbon pump2. Oceanic N2 fixation has been attributed almost exclusively to cyanobacteria, even though genes encoding nitrogenase, the enzyme that fixes N2 into ammonia, are widespread among marine bacteria and archaea3–5. Little is known about these non-cyanobacterial N2 fixers, and direct proof that they can fix nitrogen in the ocean has so far been lacking. Here we report the discovery of a non-cyanobacterial N2-fixing symbiont, ‘Candidatus Tectiglobus diatomicola’, which provides its diatom host with fixed nitrogen in return for photosynthetic carbon. The N2-fixing symbiont belongs to the order Rhizobiales and its association with a unicellular diatom expands the known hosts for this order beyond the well-known N2-fixing rhizobia–legume symbioses on land6. Our results show that the rhizobia–diatom symbioses can contribute as much fixed nitrogen as can cyanobacterial N2 fixers in the tropical North Atlantic, and that they might be responsible for N2 fixation in the vast regions of the ocean in which cyanobacteria are too rare to account for the measured rates.

Combining deep learning with physical parameters in POC and PIC inversion from spaceborne lidar CALIOP

POC and PIC are indispensable components in the global ocean carbon cycle, their transport and space distribution being driven by the biological carbon pump and the carbonate pump. However, passive ocean color remote sensing, usually employed for POC and PIC research, experiences serious shortcomings in polar winter conditions due to its reliance on sunlight, leading to scarce data coverage in the polar regions. In contrast, CALIOP has shown considerable promise in high-latitude ocean observing. Past approaches to estimate POC from CALIOP data relied on bbp measurements obtained through the application of algorithms that presume an empirical linear correlation between bbp and the backscatter coefficient measured at 180°. This method does not account for any spatiotemporal variability in the conversion coefficient. Furthermore, the potential of CALIOP to provide estimates of PIC has not been explored yet. Here, we developed an innovative Two-Branch-Two-Step (TBTS) model to estimate POC and PIC from CALIOP data, which effectively expands the spatial coverage of the MODIS products. This method exploits the strength of deep learning while encapsulating the generalizability of physical parameters. This method consists of two branches: (1) a deep learning branch based on lidar attenuated backscatter waveform and (2) a branch focusing on physical parameters, including the total column-integrated depolarization ratio and the subsurface cross-polarized component of column-integrated backscatter. The model’s generalizability and accuracy are confirmed through the evaluation of a test dataset and validation using in-situ measurements. Our model outperforms several other prevalent machine learning models. We also dissected the importance of different parts of the input data using SHAP tools, thereby providing insights into the black-box nature of deep learning models. Using CALIOP products, we put forth the inaugural estimation of interannually resolved PIC and POC standing stocks in polar regions. The implementation of CALIOP in polar regions bridges the gap inherent in passive ocean color measurements. Lidar-derived total global PIC standing stock is estimated to be 8% higher than that from MODIS, while the POC standing stock is boosted by 17.2%. The carbon standing stock in polar regions exhibits significant inter-annual variability and apparent seasonal periodicity. Hence, results from this research effort clearly reveal that the exploitation of the CALIOP-derived POC and PIC measurements, in combination with the application of new approaches and algorithms to future space lidar data, will undeniably enhance our comprehension of the polar ocean carbon cycle. However, it is important to acknowledge that the CALIOP products may inherit biases from the MODIS data used for training. Hence, where MODIS data is available, it’s still the “better” product to use, but where there isn’t MODIS data, the CALIOP product is extremely useful, especially in the polar regions.

Sediment carbon storage in subtidal beds of the invasive seagrass Halophila stipulacea along an extreme water depth gradient, St. Thomas, U.S. Virgin Islands

Blue carbon ecosystems such as mangroves, salt marshes, and seagrass beds are found globally and are fundamental to fisheries production, storm surge protection, and carbon sequestration. The contribution of seagrass ecosystems to global carbon stocks is still not well understood, including in the United States Virgin Islands (USVI). No study has been published to-date assessing the sediment carbon density (SCD) in seagrass beds in the USVI. This study focused on the carbon storage ability of the invasive species, Halophila stipulacea, which is compact in size compared to common native seagrasses and has spread rapidly to become a dominant seagrass in the USVI. This species forms dense mats across a wide depth range (<1 m to 50 m) typically uninhabitable to its native counterparts (Syringodium filiforme and Thalassia testudinum). Several biotic and abiotic factors influence the carbon storage ability of seagrass, yet little is known about carbon storage sequestration along a depth gradient for H. stipulacea. This study provides the first assessment of the biological characteristics (shoot density, leaf area, leaf height, and percent cover) and carbon storage ability of H. stipulacea across a depth gradient (shallow: 5–10 m; medium: 15–20 m; deep: 25–30 m) at two sites in St. Thomas, USVI. Mean sediment carbon density (SCD) values per core reported for H. stipulacea in this study ranged from 3.88 to 15.67mgC/cm3; these were comparable to regional and global seagrass studies. Biological characteristics were not an accurate predictor of SCD. A significant interaction between water depth and site was found to affect mean SCD of H. stipulacea beds. It is likely that site-specific factors most likely account for variations seen within the data. Although carbon values in this study compared to values reported in the literature, other factors such as land use, proximity to carbon sources, sediment microbial community, and water current patterns may be driving SCD values. These findings highlight the need for site and species-specific carbon storage assessments on local to regional scales to accurately estimate current and forecasted blue carbon stocks.

Aquatic photosynthetic carbon pump driven by periodic temperature variations affects dissolved inorganic carbon and hydrochemical characteristics in a groundwater-fed reservoir

Under the influence of periodic temperature variations, biogeochemical cycling in water bodies is markedly affected by the periodic thermal stratification processes in subtropical reservoirs or lakes. In current studies, there is insufficient research on the influence and mechanism of dissolved inorganic carbon (DIC) distribution in karst carbon-rich groundwater-fed reservoirs under the coupled effects of thermal structure stratification and the biological carbon pump (BCP) effect. To address this issue, the Dalongdong (DLD) reservoir in the subtropical region of southern China was chosen as the site for long-term monitoring and research on relevant physicochemical parameters of water, DIC, and its stable carbon isotope (δ13CDIC), CO2 emission flux, as well as the reservoir's thermal stratification index. The results show that: (1) the DLD reservoir is a typical warm monomictic reservoir, which exhibits regular variations of mixing period-stratification period-mixing period on a yearly scale due to thermal structure changes; (2) DIC was consumed by aquatic photosynthetic organisms in the epilimnion during the stratification period, leading to a decrease in DIC concentration, partial pressure of CO2 (pCO2) and CO2 emission flux, and an increase in stable carbon isotope (δ13CDIC). During the mixing period, the trend was reversed; (3) During the thermal stratification, aquatic photosynthesis and water temperature were the primary factors controlling DIC variations in both the epilimnion and thermocline. Regarding the hypolimnion, calcite dissolution, organic matter decomposition, and water temperature were the dominant controlling factors. These results indicate that although carbon-rich karst groundwater provides a plentiful supply of DIC in the DLD reservoir, its availability is still influenced by variations in the reservoir's thermal structure and the metabolic processes of aquatic photosynthetic organisms. Therefore, to better estimate the regional carbon budget in a reservoir or lake, future studies should especially consider the combined effects of BCP and thermal structure variations on carbon variations.

Iron dissolution from Patagonian dust in the Southern Ocean: under present and future conditions

Although the input of desert dust as a key source of trace metals in the Southern Ocean (SO) has been previously studied, the dissolution process of metals in surface waters, particularly iron (Fe), remain poorly understood. Given the crucial role of Fe in primary production and the biological carbon pump in the SO, we focused on experimental estimations of Fe dissolution from Patagonian dust, the primary natural dust source in the SO. Our study considered both current and projected future conditions, encompassing sea-surface warming, acidification, increased photosynthetically active radiation, and doubled dust inputs. Through controlled laboratory experiments using filtered SO seawater, conducted over 7 days, we assessed changes in particulate Fe (pFe) concentrations, Fe redox speciation (Fe(II)/Fe(III)), and in the mineralogy of Fe-bearing dust in abiotic condition. The predominant minerals in the dust included quartz and aluminosilicates, with silicon (Si), aluminum (Al), and Fe as the major elements. No significant alterations in the mineralogy and the elemental composition of the dust were recorded during the dissolution experiments, neither under present nor under projected future conditions. The particulate Fe(II)/Fe(III) ratio remained consistently at 0.25 during the experiments, unaffected by changed conditions. Consequently, changes in environmental conditions in the SO would therefore not significantly alter the mineralogy and redox speciation of pFe in the Patagonian dust. On the contrary, pFe exhibited a dissolution rate of 3.8% and 1.6% per day under present and future conditions, respectively. The environmental changes anticipated for 2100 in the SO will likely to result in a decrease in the dissolution rate of pFe. Thus, even though a doubling of dust input by 2100 is anticipated, it will unlikely provide significantly more dissolved Fe (dFe) in seawater in the SO. Consequently, the future intensification of Patagonian dust inputs may not alleviate the Fe limitation in the SO.

Sediment resuspension as a driving force for organic carbon transference and rebalance in marginal seas

The transfer of particulate organic carbon (POC) to dissolved organic carbon (DOC; OC transferP-D) is crucial for the marine carbon cycle. Sediment resuspension driven by hydrodynamic forcing can affect the burial of sedimentary POC and benthic biological processes in marginal sea. However, the role of sediment grain size fraction on OC transferP-D and the subsequent impact on OC cycling remain unknown. Here, we conduct sediment resuspension simulations by resuspending grain-size fractionated sediments (< 20, 20–63, and > 63 μm) into filtered seawater, combined with analyses of OC content, optical characteristics, 13C and 14C isotope compositions, and molecular dynamics simulations to investigate OC transferP-D and its regulations on OC bioavailability under sediment resuspension. Our results show that the relative intensities of terrestrial humic-like OC (refractory DOC) increase in resuspension experiments of < 20, 20–63, and > 63 μm sediments by 0.14, 0.01, and 0.03, respectively, likely suggesting that sediment resuspension drives refractory DOC transfer into seawater. The variations in the relative intensities of microbial protein-like DOC are linked to the change of terrestrial humic-like OC, accompanied by higher DOC content and reactivity in seawater, particularly in finer sediments resuspension experiments. This implies that transferred DOC likely fuels microbial growth, contributing to the subsequent enhancement of DOC bioavailability in seawater. Our results also show that the POC contents increase by 0.35 %, 0.66 %, and 0.93 % in < 20, 20–63, and > 63 μm resuspension experiments at the end of incubation, respectively. This suggests that the re-absorption of OC on particles may be a significant process, but previously unrecognized during sediment resuspension. Overall, our findings suggest that sediment resuspension promotes the OC transferP-D, and the magnitudes of OC transferP-D further influence the DOC and POC properties by inducing microbial production and respiration. These processes significantly affect the dynamics and recycling of biological carbon pump in shallow marginal seas.

RETRACTION: Rapid Acidification of the Arctic Chukchi Sea Waters Driven by Anthropogenic Forcing and Biological Carbon Recycling

RETRACTIOND. Qi, Y. Wu, L. Chen, W.‐J. Cai, Z. Ouyang, Y. Zhang, L. G. Anderson, R. A. Feely, Y. Zhuang, H. Lin, R. Lei, H. Bi. (2022). Rapid Acidification of the Arctic Chukchi Sea Waters Driven by Anthropogenic Forcing and Biological Carbon Recycling. Geophysical Research Letters, 49, e2021GL097246. https://doi.org/10.1029/2021GL097246.The above article, published online on 21 February 2022 in Wiley Online Library (wileyonlinelibrary.com), has been retracted by agreement between the journal Editor‐in‐Chief, Harihar Rajaram; American Geophysical Union; and John Wiley &amp; Sons LLC. The retraction has been agreed as it was discovered that the 2019 pCO2 data collected on the 10th Chinese National Arctic Research Expedition and analyzed along with other data in this paper was used without proper permission. AGU Publications and Wiley evaluated all information submitted by the authors and scientific agencies and carefully considered Committee on Publication Ethics (COPE) guidelines before making this decision. The authors have revised their statistical analyses by excluding the 2019 Chinese National Arctic Research Expedition data and have stated they intend to submit the revised manuscript to the journal. D. Qi acknowledges that the data ownership is disputed, and therefore accepts the retraction. L. Chen and W.‐J. Cai disagree with the retraction. Z. Ouyang, Y. Zhang, L. G. Anderson, R. A. Feely, Y. Zhuang, H. Lin, R. Lei, and H. Bi did not respond to our notice of retraction.

Behaviours of methane metabolism and community dynamics of methane anaerobic oxidation microbes on carbonate rocks with long-term cultivation in cold seep environment

The anaerobic oxidation of methane (AOM) and sulfate reduction processes in cold seep environments can control methane emission sources and thus mitigate the pressure of increasing global greenhouse gas concentrations. The surfaces of carbonate rocks in cold seep host an abundance of microorganisms that participate in AOM reactions. Investigating the metabolism and conversion of methane by these microbes is instrumental in advancing the exploration and utilization of deep-sea methane energy. Previous studies primarily focused on in-situ investigations of microbial communities on carbonate rocks in cold seep environments, while the dynamic balance of carbonate mineralization caused by microbial community changes and the characteristics of methane consumption in carbonate samples remains unclear. In this study, we used methane as the sole carbon source, enriched and cultured carbonate samples under high pressure, and monitored the community dynamics regularly. The results demonstrated that methane consumption and metabolic pathways played a crucial role in influencing community succession and carbonate mineralization. AOM processes, coupled with sulfate reduction and nitrate reduction, which are dominated by ANME-2c, facilitate the precipitation of calcium carbonate. Conversely, the acetate production process, dominated by ANME-1, may hinder the efficiency of calcium carbonate mineralization. Additionally, the impact of bacterial groups in the enrichment process, through the production of extracellular enzymes, organic acid pathways, and the expression of carbonic anhydrase pathways on carbonate mineralization, should not be disregarded. These findings highlight the significance of diverse pathway methane metabolism in the dynamics of methane consumption, deep-sea microbial communities, carbonate kinetics, and marine biological carbon sequestration processes.

Microbial interactions with microplastics: Insights into the plastic carbon cycle in the ocean

The fate of microplastics (MPs) in the ocean is mostly driven by (i) photo-oxidation to smaller particles and dissolved constituents, which fuel the dissolved organic carbon pool (plastic-derived DOC, pDOC), and (ii) interactions with organic matter forming sinking aggregates (marine plastic snow). Two separate laboratory experiments were conducted to investigate the two pathways of MPs. In the first experiment, we measured potential rates of microbial pDOC utilization in bottle incubations over 15 days with microbial assemblages from coastal and offshore waters. Microbial utilization of pDOC was more efficient in the coastal (72% bioreactive pDOC) compared with the offshore experiment (32% bioreactive pDOC) 15 days. Changes in bacterial cell abundance and extracellular enzyme activities (glucosidase, peptidase, esterases) indicated that a fraction of pDOC was repackaged into microbial exopolymeric substances (EPS), stimulating growth of known EPS degrading bacteria within the phyla Verrucomicrobiota and Planctomycetota. Microbial EPS likely also played a key role in our second experiment that showed the formation of marine plastic snow in roller tanks with cultured cells of Emiliana huxleyi but not with cells of an Isocrysis sp. culture. Average sinking velocities of marine plastic snow were a factor of 1.2 lower compared with marine snow without MPs. Both aggregate types showed reduced sinking velocities in a density stratified sinking column. Our results from the two experiments on (i) microbial utilization of pDOC and (ii) the formation and sinking of marine plastic snow indicate potential effects of plastic-derived compounds on microbial elemental cycles (i.e., pDOC repackaged into EPS) with consequences for the efficiency of the biological carbon pump (i.e., marine plastic snow reduces carbon export) and the fate of plastic-derived compounds in the ocean.

Exploring the relationship between sea ice and phytoplankton growth in the Weddell Gyre using satellite and Argo float data

Abstract. Some of the highest rates of primary production across the Southern Ocean occur in the seasonal ice zone (SIZ), making this a prominent area of importance for both local ecosystems and the global carbon cycle. There, the annual advance and retreat of ice impacts light and nutrient availability, as well as the circulation and stratification, thereby imposing a dominant control on phytoplankton growth. In this study, the drivers of variability in phytoplankton growth between 2002–2020 in the Weddell Gyre SIZ were assessed using satellite net primary production (NPP) products alongside chlorophyll-a and particulate organic carbon (POC) data from autonomous biogeochemical floats. Although the highest daily rates of NPP are consistently observed in the continental shelf region (water depths shallower than 2000 m), the open-ocean region's larger size and longer ice-free season mean that it dominates biological carbon uptake within the Weddell Gyre, accounting for 93 %–96 % of the basin's total annual NPP. Variability in the summer maximum ice-free area is the strongest predictor of inter-annual variability in total NPP across the Weddell Gyre, with greater ice-free area resulting in greater annual NPP, explaining nearly half of the variance (R2=42 %). In the shelf region, the return of sea ice cover controls the end of the productive season. In the open ocean, however, both satellite NPP and float data show that a decline in NPP occurs before the end of the ice-free season (∼ 80 to 130 d after sea ice retreat). Evidence of concurrent increases in float-observed chlorophyll-a and POC suggest that later in the summer season additional factors such as micro-nutrient availability or top-down controls (e.g. grazing) could be limiting NPP. These results indicate that in a warmer and more ice-free Weddell Gyre, notwithstanding compensating changes in nutrient supply, NPP is likely to be enhanced only up to a certain limit of ice-free days.

Strong and efficient summertime carbon export driven by aggregation processes in a subarctic coastal ecosystem

AbstractSinking marine particles, one pathway of the biological carbon pump, transports carbon to the deep ocean from the surface, thereby modulating atmospheric carbon dioxide and supplying benthic food. Few in situ measurements exist of sinking particles in the Northern Gulf of Alaska; therefore, regional carbon flux prediction is poorly constrained. In this study, we (1) characterize the strength and efficiency of the biological carbon pump and (2) identify drivers of carbon flux in the Northern Gulf of Alaska. We deployed up to five inline drifting sediment traps in the upper 150 m to simultaneously collect bulk carbon and intact sinking particles in polyacrylamide gels and measured net primary productivity from deck‐board incubations during the summer of 2019. We found high carbon flux magnitude, low attenuation with depth, and high export efficiency. We quantitatively attributed carbon flux between 10 particle types, including various fecal pellet categories, dense detritus, and aggregates using polyacrylamide gels. The contribution of aggregates to total carbon flux (41–93%) and total carbon flux variability (95%) suggest that aggregation processes, not zooplankton repackaging, played a dominant role in carbon export. Furthermore, export efficiency correlated significantly with the proportion of chlorophyll a in the large size fraction (&gt; 20 μm), total aggregate carbon flux, and contribution of aggregates to total carbon flux. These results suggest that this stratified, small‐cell‐dominated ecosystem can have sufficient aggregation to allow for a strong and efficient biological carbon pump. This is the first integrative description of the biological carbon pump in this region.

Assessing transient changes in the ocean carbon cycle during the last deglaciation through carbon isotope modeling

Abstract. Atmospheric carbon dioxide concentration (pCO2) has increased by approximately 80 ppm from the Last Glacial Maximum (LGM) to the early Holocene. The change in this atmospheric greenhouse gas is recognized as a climate system response to gradual change in insolation. Previous modeling studies suggested that the deglacial increase in atmospheric pCO2 is primarily attributed to the release of CO2 from the ocean. Additionally, it has been suggested that abrupt change in the Atlantic meridional overturning circulation (AMOC) and associated interhemispheric climate changes are involved in the release of CO2. However, understanding remains limited regarding oceanic circulation changes and the factors responsible for changes in chemical tracers in the ocean during the last deglaciation and their impact on atmospheric pCO2. In this study, we investigate the evolution of the ocean carbon cycle during the last deglaciation (21 to 11 ka BP) using three-dimensional ocean fields from the transient simulation of the MIROC 4m climate model, which exhibits abrupt AMOC changes similar to those observed in reconstructions. We investigate the reliability of simulated changes in the ocean carbon cycle by comparing the simulated carbon isotope ratios with sediment core data, and we examine potential biases and overlooked or underestimated processes in the model. Qualitatively, the modeled changes in atmospheric pCO2 are consistent with ice core records. For example, during Heinrich Stadial 1 (HS1), atmospheric pCO2 increases by 10.2 ppm, followed by a reduction of 7.0 ppm during the Bølling–Allerød (BA) period and then by an increase of 6.8 ppm during the Younger Dryas (YD) period. However, the model underestimates the changes in atmospheric pCO2 during these events compared to values derived from ice core data. Radiocarbon and stable isotope signatures (Δ14C and δ13C) indicate that the model underestimates both the activated deep-ocean ventilation and reduced efficiency of biological carbon export in the Southern Ocean and the active ventilation in the North Pacific Intermediate Water (NPIW) during HS1. The relatively small changes in simulated atmospheric pCO2 during HS1 might be attributable to these underestimations of ocean circulation variation. The changes in Δ14C associated with strengthening and weakening of the AMOC during the BA and YD periods are generally consistent with values derived from sediment core records. However, although the data indicate continuous increase in δ13C in the deep ocean throughout the YD period, the model shows the opposite trend. It suggests that the model either simulates excessive weakening of the AMOC during the YD period or has limited representation of geochemical processes, including marine ecosystem response and terrestrial carbon storage. Decomposing the factors behind the changes in ocean pCO2 reveals that variations in temperature and alkalinity have the greatest impact on change in atmospheric pCO2. Compensation for the effects of temperature and alkalinity suggests that the AMOC changes and the associated bipolar climate changes contribute to the decrease in atmospheric pCO2 during the BA and the increase in atmospheric pCO2 during the YD period.

Temporal and vertical variations in carbon flux and export of zooplankton fecal pellets in the western South China Sea

The enhancement of particulate organic carbon transfer to the deep sea by zooplankton fecal pellets constitutes a crucial component of the marine biological carbon pump. Here, we investigated time-series variations in characteristic and flux of zooplankton fecal pellets at different water depths of two sediment-trap mooring stations from May 2021 to May 2022 in the western South China Sea. The results show that numerical fluxes of fecal pellets were 0.75 ± 0.60 × 104, 0.63 ± 0.63 × 104, and 0.38 ± 0.29 × 104 pellets m−2 d−1 at 500 m, 1170 m, and 1380 m water depth, respectively, corresponding to their carbon fluxes of 0.10 ± 0.06, 0.09 ± 0.04, and 0.10 ± 0.04 mg C m−2 d−1. Both numerical and carbon fluxes of fecal pellets exhibited clear seasonal variations, with two peaks occurred in August and early November at all water depths. The fecal pellets have distinct morphological types (spherical, cylindrical, and ellipsoidal) and their contributions to the numerical and carbon fluxes were different. At all water depths, ellipsoidal and spherical pellets accounted for 96.0% of the numerical flux and 72.1% of the carbon flux. Cylindrical pellets were rare in quantity, accounting for 4.0% of numerical flux, but their carbon contribution accounted for 27.9% of the total fecal pellet carbon flux. The proportional fractions of zooplankton fecal pellets contributed to the overall particulate organic carbon from 0.7% to 28.2% in the western South China Sea, and fell in a reasonable range around the world. Multiple mechanisms, including East Asian monsoon climate and zooplankton community structure may be responsible for the production and fate of fecal pellets as well as their contribution to the settling particulate organic carbon.

Effect of biopolymer concentration on the kinetics of marine snow formation

Marine snow floc refers to coagulation of microbes and marine debris in the upper ocean layers, bound together by bio-polymers such as transparent exopolymer particles (TEP) secreted by microbes. The stickiness of TEP plays a crucial role in determining the rate of marine snow floc formation. Additionally, the effect of TEP on the size distribution of marine snow influences the sinking velocity of the flocs. Using a surrogate material system, we study the kinetics of marine snow using a custom-built experimental setup, which allows direct measurement of floc size, floc number density, and floc sinking velocity as a function of TEP concentration. By comparing the experimental floc size with Smoluchowski coagulation theory, we obtain stickiness index, which increases with TEP concentration first, reaches maximum around 0.3 g/L of TEP and decreases upon further increase in TEP concentration. The experimental sinking velocity scales with floc size as ws=adb, with b ranging from 0.57 to 0.68. The exponent is slightly higher than that of 0.5 expected in the Stokes limit. This study establishes a clear link between stickiness index, sinking velocity, and polymer concentration, providing valuable insights for modelling of marine snow dynamics in deep ocean conditions. These findings contribute to a better understanding of the kinetics of marine snow formation, essential for predicting carbon sequestration within the biological carbon pump.

Technical note: A comparison of methods for estimating coccolith mass

Abstract. The fossil record of coccolithophores dates back approximately 225 million years, and the production of their calcite platelets (coccoliths) contributes to the global carbon cycle over short and geological timescales. Variations in coccolithophore parameters (e.g. community composition, morphology, size and coccolith mass) are a key factor for ocean biogeochemical dynamics (e.g. biological carbon pump) and have been used as a palaeoproxy to understand past oceanographic conditions. Coccolith mass has been frequently estimated with different methods with electron microscopy being the most applied. Here, we compared the electron microscopy (EM) method with the Coulter multisizer (CM) (i.e. electric field disturbance) and bidirectional circular polarization (BCP) methods to estimate coccolith masses (pg CaCO3) in controlled laboratory experiments with two ecotypes of Emiliania huxleyi. Average coccolith mass estimates were in good agreement with literature data. However, mass estimates from the CM were slightly overestimated compared to EM and BCP estimates, and a correction factor (cf=0.8) is suggested to compensate for this discrepancy. The relative change in coccolith mass triggered by morphotype-specific structures and environmental parameters (i.e. seawater carbonate chemistry) was suitably captured by each of the three techniques.

Pyrolysis of macroalgae: Insight into product yields and biochar morphology and stability

Pyrolysis of biomass residues into biochar is seen as a feasible way to mitigate climate change by biological carbon storage (carbon dioxide removal, CDR) and to substitute fossil fuel with sustainable biofuel. This study applies a combination of flash and ramp heating pyrolysis, and organic petrography to investigate the hydrocarbon (biofuel) potential and biochar stability and morphotypes of eight brown, red, and green macroalgal species of different tissue complexity. The carbon stability of biochar derived from macroalgae has not previously been assessed using organic petrography (reflectance measurements) and evaluated in the context of the geological carbon cycle. The biochar, hydrocarbon, and CO + CO2 yields vary due to different chemical composition of the macroalgal species, but the product yield variations are not related to the brown, red, or green macroalgal groups. The total biofuel yield shows an inverse trend with biochar yield. A slower heating rate produces more biochar and higher CO + CO2 and lower biofuel yields than the combined flash pyrolysis and faster heating rate. The morphotype composition of the biochar was qualitatively examined by reflected light microscopy while carbon stability was assessed by random reflectance (Ro) measurements. The diverse morphotype compositions observed in biochar formed under similar pyrolysis conditions likely stem from variations in the original algal composition. While some biochar samples show morphologies resembling the original macroalgal structure, porous morphotypes predominantly characterize the biochar samples overall. Despite a maximum pyrolysis production temperature (PT) of 650 °C, the highest mean Ro value among all biochar samples is 2.91%, corresponding to a carbonization temperature (CT) of 526 °C. This observation is tentatively related to the less lignocellulosic structure of the macroalgae compared to terrigenous biomass. Four biochar samples have their entire Ro distribution range above the inertinite benchmark (IBRo2%) of Ro = 2% indicating high carbon stability. Conversely, the remaining four biochar samples exhibit Ro distributions extending below IBRo2%, indicating the presence of a carbon fraction with lower long-term stability in soil. The statistically significant inverse relationship observed between the mean Ro values and the peak hydrocarbon generation temperature (Tmax) can be attributed to the behavior of residual macromolecules within the biochar. When these macromolecules reach peak biofuel generation at a lower temperature, they undergo carbonization over a more extended time interval during pyrolysis. Consequently, this prolonged exposure to the pyrolysis process leads to higher degrees of carbonization, as reflected by higher Ro values. In conclusion, the findings from pyrolysis and organic petrography reveal: (1) Macroalgae demonstrate potential for biofuel production, although biofuel yields contingent upon both the species of macroalgal and the heating rate employed, and (2) This study documents for the first time that flash+ramp pyrolysis of macroalgae yields biochar suitable for long-term carbon storage. However, both the carbon stability inferred from Ro frequency distributions and biochar yields show variations across different macroalgal species and heating rate.