Biological Materials Research Articles

Analysis of Student Learning Outcomes on Biology of The Blood Circulation System in Senior High School

The importance of analyzing the learning process becomes a very significant impetus when it is considered a process of changing student behavior. Evaluation is the process of collecting, assessing, and interpreting data to ensure the level of achievement of a student's learning goals. This study aims to determine student learning outcomes on circulatory system biology material class XI Senior High School. The method used in this study is the quantitative descriptive method. The result of this study is that the average score obtained by students after doing the question is 30.54 with the highest score of 56 points and the lowest score of 12 points. Of the 11 students who did 25 test questions, three students with the highest rankings and three students with the lowest rankings were obtained. Based on the results of research that has been carried out, it can be concluded that students have a good interest in learning the material of the circulatory system. However, some students are still unable to understand the material due to the lack of precise selection of learning methods and media applied by teachers in the learning process.

Organic geochemical evaluation of crude oils from some producing fields in the Niger Delta basin, Nigeria

Geochemical and biomarker characteristics of representative crude oil samples from selected fields in southern Nigeria were evaluated to determine the organic matter input, origin of biological material, depositional environment, thermal maturity, and genetic relationship between the oils. Four crude oil samples were obtained from various oil producing fields from Delta, Bayelsa and Abia state in southern Nigeria and labeled Kwale (KW), Kolo creek (KLC), Owaza (OWA1 and OWA2). The crude oil samples were fractionated into saturates, aromatic hydrocarbons and polar compounds using column chromatography on silica gel thereafter, analyzed using Gas chromatography-mass spectrometry (GC–MS). The calculated ratios of normal alkanes, acyclic isoprenoids, carbon preference index (CPI), hopanes, and steranes showed the following results: Pr/Ph (0.34 to 0.89); C29/C27 (0.78 to 1.25); 20S/(20S + 20R)C29sterane (0.28 to 0.66); 22S/(22S + 22R)C32 homohopane (0.17 to 0.23); CPI (0.96 to 0.98); Ts/Ts + Tm (0.46 to 0.50); and sterane/hopane (0.16 to 0.87). The results obtained were used to correlate the crude oils with respect to depositional environment, thermal maturity, and organic matter source. The Pr/Ph ratios of KW and KLC were less than one, and the cross-plot of Pr/nC17 versus Ph/nC18 of KW and KLC suggested that the oils were deposited under anoxic environments, whereas OWA1 and OWA2 indicated oxic conditions with no biodegradation. From the calculated ratios of 22S (22S + 22R)C32 homohopane and CPI, the oils were mature and had entered the generating window. Sample OWA1 is the most mature, while KLC is the least mature. The calculated ratios also showed that the four oil samples were from a shale source rock with both terrestrial and marine inputs.

Development and Validation of a Capillary Zone Electrophoresis-Tandem Mass Spectrometry Method for Simultaneous Quantification of Eight β-Lactam Antibiotics and Two β-Lactamase Inhibitors in Plasma Samples.

Monitoring plasma concentrations of β-lactam antibiotics is crucial, particularly in critically ill patients, where variations in concentrations can lead to treatment failure or adverse events. Standardized antimicrobial regimens may not be effective for all patients, especially in special groups with altered physiological parameters. Pharmacokinetic/pharmacodynamic (PK/PD) studies highlight the time-dependent antibacterial activity of these antibiotics, emphasizing the need for personalized dosing. Therapeutic drug monitoring (TDM) is essential, requiring rapid and accurate analytical methods for precise determination of drugs in biological material (typically plasma or serum). This study presents a novel capillary zone electrophoresis-tandem mass spectrometry (CZE-MS/MS) method designed for the simultaneous quantification of five penicillin antibiotics, two cephalosporins, one carbapenem, and two β-lactamase inhibitors in a single run. The method involves a simple sample pretreatment-precipitation with organic solvent-and has a run time of 20 min. Optimization of CZE separation conditions revealed that 20 mM ammonium hydrogen carbonate (NH4HCO3) serves as the optimal background electrolyte (BGE). Positive electrospray ionization (ESI) mode, with isopropyl alcohol (IP)/10 mM ammonium formate water solution (50/50, v/v) as the sheath liquid, was identified as the optimal condition for MS detection. Method validation according to the Food and Drug Administration (FDA) guideline for development of bioanalytical methods demonstrated satisfactory selectivity, linearity, recovery, robustness, and stability. The method's practicality was evaluated using the Blue Applicability Grade Index (BAGI), yielding a score of 77.5. Moreover, the greenness of the proposed method was evaluated by two commonly used metric tools-Analytical GREEnness (AGREE) and Green Analytical Procedure Index (GAPI). The developed CZE-MS/MS method offers a practical and reliable approach for quantifying a broad spectrum of β-lactam antibiotics in plasma. Its ability to simultaneously quantify multiple analytes in a single run, coupled with a straightforward sample pretreatment, positions it as a valuable and prospective tool for TDM in critically ill patients.

Article biodiversity inside bottles: animals, fungi, and plants in traditional alcoholic drinks.

The use of animals, fungi, and plants as a source of bioactive compounds has been widely practiced in diverse cultures throughout the world, particularly in alcoholic drinks. The nature of the biological material, method of preparation and alcohol concentration play a predominant role in the extraction of bioactive compounds and the achievement of desired results. However, certain aspects must be considered to guarantee the innocuity of these drinks and reduce the risk of intoxication, infections and allergic reactions, aspects which are sometimes overlooked. In addition, the implications of using threatened or protected species must be considered to reduce the negative impact on their populations. The authors recommend the establishment of production systems which guarantee products with adequate quality controls and ensure the benefits to the consumer.

Cognitive Level of Program for International Student Assessment (PISA) Questions Based on the Revised Bloom’s Taxonomy

This study aimed to determine the cognitive level of the content in the Program for International Student Assessment (PISA) questions. This research method described the cognitive level of scientific literacy PISA questions. The cognitive level used in this study was based on the revised Bloom’s taxonomy by Anderson and Krathwohl, which includes C1 (remembering), C2 (understanding), C3 (applying), C4 (analyzing), C5 (evaluating), and C6 (creating). The PISA questions were arranged according to a predetermined theoretical framework: competence, context, knowledge, and attitude. The subjects of this research were scientific PISA questions released in 2006 and 2015, with 45 questions about the content of living systems of biological materials. The analysis of the cognitive level was presented in the form of a table and then made into a diagram so that a conclusion could be made. The results of this study indicated that PISA questions were dispersed across several cognitive levels according to the revised Bloom’s taxonomy, with the most dominant percentage of 38.24% being the cognitive analysis level (C4) in 2006 PISA and 36.36% in 2015 PISA. This study only analyzes PISA questions in the years that only focus on scientific literacy, so it needs to be analyzed in other years as well; then, it was hoped that teachers could make PISA model assessment questions with a higher cognitive level and increase the questions of students’ conceptual knowledge.

Association between Pityriasis Rosea (PR) and HHV-6/HHV-7 Infection: Importance of Sample Selection and Diagnostic Techniques.

Recent studies have focused on the role of human herpesvirus 6 (HHV-6) and human herpesvirus 7 (HHV-7) in PR etiology with varying results. In our study, with the approach that the discrepancy between the results may be related to the different samples and techniques used, we aimed to clarify the etiology by examining tissue and plasma samples using molecular methods and evaluating the results together with serological parameters. Skin biopsies and plasma samples of twenty-five PR patients were tested to detect HHV-6 and HHV-7 DNA using calibrated quantitative real-time polymerase chain reaction (CQ RT-PCR). IgG and IgM antibodies against HHV-6 and HHV-7 were tested by enzyme-linked immunosorbent assay and indirect immunofluorescence. Of the patient group, 64% were positive for HHV-6 IgG without IgM positivity. HHV-6 DNA was present in seven tissue and ten plasma samples. HHV-7 positivity was 100% and 12% for IgG and IgM antibodies, respectively. HHV-7 DNA was detected in four tissue samples and one plasma sample. Patients with HHV-7 DNA-positive plasma and tissue samples had also HHV-7 IgM antibodies. In conclusion, our results seem to support the role of HHV-6/HHV-7 in the etiology of PR. To clarify the etiology of PR and avoid confusion, the collection of different biological materials simultaneously and the usage of CQ RT-PCR as a diagnostic technique are recommended.

Rapid HPLC method reveals dynamic shifts in coenzyme Q redox state

Ubiquinol or coenzyme Q (CoQ) is a lipid-soluble electron carrier in the respiratory chain and an electron acceptor for various enzymes in metabolic pathways that intersect at this cofactor hub in the mitochondrial inner membrane. The reduced form of CoQ is an antioxidant, which protects against lipid peroxidation. In this study, we have optimized a UV-detected HPLC method for CoQ analysis from biological materials, which involves a rapid single-step extraction into n-propanol followed by direct sample injection onto a column. Using this method, we have measured the oxidized, reduced and total CoQ pools, and monitored shifts in the CoQ redox status in response to cell culture conditions and bioenergetic perturbations. We find that hypoxia or sulfide exposure induces a reductive shift in the intracellular CoQ pool. The effect of hypoxia is however, rapidly reversed by exposure to ambient air. Interventions at different loci in the electron transport chain can induce sizeable redox shifts in the oxidative or reductive direction, depending on whether they are up- or downstream of complex III. We have also used this method to confirm that CoQ levels are higher and more reduced in murine heart versus brain. In summary, the availability of a convenient HPLC-based method described herein, will facilitate studies on CoQ redox dynamics in response to environmental, nutritional and endogenous alterations.

The EU Interreg Project "ADRINET": Assessment of Well-Known and Emerging Pollutants in Seafood and Their Potential Effects for Food Safety.

Anthropogenic activities lead to the spread of chemicals and biological materials, including plastic waste, toxic metals, and pharmaceuticals, of which the impact on the Mediterranean Sea is of high concern. In this context, the EU Interreg Italy-Albania-Montenegro Project "ADRINET (Adriatic Network for Marine Ecosystem) _244" (2018-2020) arises. It aims to carry out biomonitoring campaigns in the main commercial interest of fish and cephalopod species, such as Sparus aurata, Dicentrarchus labrax, Sepia spp., and Loligo spp. sampled in three different subregions of the Mediterranean Sea. The presence of the main environmental contaminants, such as cadmium, microplastics, and antibiotics was investigated in these seafood samples. Contamination by cadmium and antibiotics in the seafood investigated in our study was negligible. However, a high value of microplastics was detected in the stomach and gut of Sparus aurata and Dicentrarchus labrax. Overall, even though the presence of microplastics needs to be investigated by further studies, the results confirmed that the environmental conditions of the three bays investigated by the ADRINET project partners (Italy, Albania, Montenegro) are positive and not affected by intensive anthropogenic activity.

Dicyanorhodanine-Pyrrole Conjugates for Visible Light-Driven Quantitative Photoswitching in Solution and the Solid State.

Small molecule photoswitches capable of toggling between two distinct molecular states in response to light are versatile tools to monitor biological processes, control photochemistry, and design smart materials. In this work, six novel dicyanorhodanine-based pyrrole-containing photoswitches are reported. The molecular design avails both the Z and E isomers from synthesis, where each can be isolated using chromatographic techniques. Inter- and intramolecular hydrogen bonding (H-bonding) interactions available to the E and Z isomers, respectively, uniquely impart thermal stability to each isomer over long time periods. Photoisomerization could be assessed by solution NMR and UV-vis spectroscopic techniques along with complementary ground- and excited-state computational studies, which show good agreement. Quantitative E → Z isomerization occurs upon 523 nm irradiation of the parent compound (where R = H) in solution, whereas Z → E isomerization using 404 nm irradiation offers a photostationary state (PSS) ratio of 84/16 (E/Z). Extending the π-conjugation of the pyrrole unit (where R = p-C6H4-OMe) pushes the maximum absorption to the yellow-orange region of the visible spectrum and allows bidirectional quantitative isomerization with 404 and 595 nm excitation. Comparator molecules have been prepared to report how the presence or absence of H-bonding affects the photoswitching behavior. Finally, studies of the photoswitches in neat films and photoinactive polymer matrices reveal distinctive structural and optical properties of the Z and E isomers and ultimately afford reversible photoswitching to spectrally unique PSSs using visible light sources including the Sun.

Walking a thin line between fixation and epitope binding - characterization of antigen retrieval methods suitable for eosinophil and HSV-2 staining in formalin-fixed female reproductive tissue.

Antibody-based fluorescence analysis of female reproductive tissues in research of sexually transmitted diseases allows for an in-depth understanding of protein localization, interactions, and pathogenesis. However, in many cases, cryosectioning is not compatible with biosafety regulations; at all times, exposure of lab personnel and the public to potentially harmful pathogens from biological infectious material must be avoided; thus, formaldehyde fixation is essential. Due to formaldehyde's cross-linking properties, protein detection with antibodies can be impeded. To allow effective epitope binding during immunofluorescence of formalin-fixed paraffin-embedded vaginal tissue, we investigated two antigen retrieval methods. We tested these methods regarding their suitability for automated image analysis, facilitating reproducible quantitative microscopic data acquisition in sexually transmitted disease research. Heat-based retrieval at 80°C in citrate buffer proved to increase antibody binding to eosinophil protein and HSV-2 visibly and tissue morphology best, and was the most efficient for sample processing and quantitative analysis.

In-air micro-PIXE chemical state analysis of phosphorus and sulfur using a new parallel-beam wavelength-dispersive X-ray emission spectrometer

The proton induced K X-ray emission spectra of several different phosphorus and sulfur compounds were recorded with the new parallel-beam wavelength dispersive X-ray emission spectrometer. The spectrometer was installed recently at the external proton microbeam at the J. Stefan Institute to perform high energy resolution in-air micro-PIXE analysis in the tender X-ray range. Reported measurements are used to probe the capabilities of the spectrometer to perform also chemical state analysis. For phosphorus measurements, where the energy resolution of the spectrometer is the highest, a clear correlation between measured energy position of the Kα emission line and the phosphorus formal oxidation state is obtained. Chemical contrast is increased further in the Kβ emission spectra reflecting the structure of occupied valence molecular orbitals defined by the first coordination shell around the central phosphorus atom. A reasonable chemical contrast is maintained also in the sulfur Kβ emission spectra, despite the fact that the energy resolution of the spectrometer declines with increasing X-ray energy. Finally, an example of phosphorus speciation in reference biological material is presented, demonstrating the feasibility of the new setup to extend the capabilities of in-air micro-PIXE analysis towards chemical speciation.

Vitreous humor in the forensic toxicology of quetiapine and its metabolites.

Τhe aim of the present study was to investigate the use of vitreous humor as an alternative biological material in forensic toxicology for the determination of quetiapine, 7-hydroxy-quetiapine, and nor-quetiapine. The distribution of these substances in vitreous humor was studied by determining and correlating their concentrations in vitreous humor with the respective concentrations in blood. During this study, a method for the determination of these substances was developed, validated and applied to postmortem samples obtained from 16 relative forensic cases. The sample preparation procedure included the isolation of the analytes from vitreous humor and blood samples using solid-phase extraction, with Bond Elut LRC C18 columns followed by derivatization with BSTFA with 1% TMCS prior to GC/MS analysis. The developed method is characterized by a dynamic range of 10.0-1000.0ng/mL (R2 ≥ 0.991) for the three substances, with a limit of detection and quantification of 3.0 and 10.0ng/mL, respectively. Accuracy and precision were below 8.09% and 8.99%, respectively, for both biological materials, while absolute recovery for the three substances was greater than 81%. According to the results, quetiapine, 7-hydroxy-quetiapine, and nor-quetiapine are easily distributed in vitreous humor. The results of the study indicate the usefulness of vitreous humor in toxicological analysis for the determination of these substances, especially when the traditional biological materials are not available. The levels of quetiapine and its metabolites in vitreous humor as well as the vitreous humor to blood concentration ratios can provide important information for a more thorough toxicological investigation of forensic cases.

Factor associated with an increased rate of HBV infection in healthcare professionals

Hepatitis B can be transmitted through accidents with sharps and in the case of infection, it can increase the chances of the infected professional developing diseases such as carcinomas, cirrhosis and even leading to death. It is essential that healthcare professionals have knowledge about the means of disease transmission and understanding of accidents. The objectives of the study were to understand the factors related to the increase in HBV infection in healthcare professionals, describe the profile of accidents with biological materials in healthcare professionals, present the knowledge of healthcare professionals in relation to hepatitis B and describe the biosafety measures adopted by health professionals in relation to HBV. This was an integrative review. A search for scientific articles was carried out in indexed databases, following exclusion and inclusion criteria, using the PRISMA flowchart. 15 articles were evaluated that demonstrated low vaccination coverage, inadequate use of personal protective equipment and lack of knowledge about the infection, making it essential to monitor biosafety measures to guarantee a safe work environment

A systematic review of biobanks in Latin America: Strengths and limitations for biomedical research.

Biobanks are valuable tools for developing and applying scientific research and international cooperation through the collection of biological materials and their associated data. Systematic research following the Preferred Reporting Items for Systematic Review and Meta-Analysis guidelines was conducted in late 2022 in PubMed and Scopus, and generated 17 articles to be reviewed in depth and critically assessed using the Critical Appraisal Skills Programme Checklist due to the limited available data; 12 relevant health organizations and government websites outside of peer-reviewed journals were also included. Our research identified 44 biobanks in Latin America. In general, there is a lack of regulation and legislation guaranteeing the stored materials' quality and institutional collaboration. We believe a consensus needs to be reached regarding the terminology and definitions used for biobanks. The design for informed consent should also be agreed upon to ensure the privacy of the data shared among institutions. In conclusion, in Latin America, there is a clear need for government support in creating specific procedures for biobanks and providing further support for existing biobanks.

Concentrations and influencing factors of 17 elements in placenta, cord blood, and maternal blood of women from an e-waste recycling area

BackgroundThe effects of prenatal element exposure on mothers and fetuses have generated concern. Profiles of trace and toxic elements in biological material are urgently desired, especially for women who reside near e-waste recycling facilities. The aim of this study was to investigate elements concentrations in placenta, cord blood, and maternal blood of women and to evaluate the influencing factors. MethodsA group of 48 women from an e-waste recycling site and a group of 31 women from a non-e-waste recycling site were recruited. Basic characteristics were collected by questionnaire and the concentrations of 17 elements in placenta, cord blood, and maternal blood samples were analyzed by inductively coupled plasma mass spectrometry (ICP-MS). Finally, the generalized linear model regression analysis (GLM) was used to test the association between element concentrations and possible factors. ResultsCompared to the control group, the exposed group had significantly elevated cadmium (Cd), zinc (Zn), nickel (Ni), and antimony (Sb) in placenta, and higher lead (Pb) in maternal blood and cord blood (P<0.05). Sb concentration in maternal blood was significantly lower than in the control group (P<0.05). GLM analysis showed that element concentrations were mainly associated with maternal age [chromium (Cr), iron (Fe), selenium (Se), cobalt (Co), mercury (Hg) in placenta, copper (Cu) in maternal blood], education (Se, Sb in placenta), family income (Cu in maternal blood and Ni in placenta), passive smoking [Cu and Zn in placenta, Pb in maternal blood], and e-waste contact history (Hg in cord blood, Cu, Zn, and Cd in maternal blood). ConclusionsWomen in the e-waste recycling area had higher toxic element levels in the placenta and blood samples. More preventive measures were needed to reduce the risk of element exposure for mothers and fetuses in these areas.

Structural diversity of crustacean exoskeletons and its implications for biomimetics.

The crustacean cuticle is a biological composite material consisting of chitin-protein fibres in a mineralized matrix. Recent research has revealed a surprising range of fibre architectures and mineral compositions of crustacean skeletal structures adapted to various mechanical demands. It is becoming increasingly clear that the organic fibres in the cuticle may be organized in patterns differing from the standard twisted plywood model. Observed fibre architectures in protruding skeletal structures include longitudinal and circular parallel fibre arrays. Skeletal minerals often include calcium phosphates in addition to calcium carbonates. Furthermore, skeletal properties are affected by protein cross-linking, which replaces mineralization as a stiffening mechanism in some structures. Several common structural motifs, such as the stiffening of the outer skeletal layers, the incorporation of non-mineralized cuticle in exposed structures, and interchanging layers of parallel fibres and the twisted plywood structure, can be identified in skeletal elements with similar functions. These evolutionary solutions have the potential for biomimetic applications, particularly as manufacturing technologies advance. To make use of this potential, we need to understand the processes behind the formation of the crustacean exoskeleton and determine which features are truly adaptive and worth mimicking.

Red rice (Oryza sativa L.) composition and its water interaction

Red rice (RR) is renowned for its exceptional nutritional properties and bioactive compounds. Preservation techniques can extend its shelf-life and enhance its market value. Understanding the relationship between the nutritional composition of RR and its water interaction is crucial for improving processing control, product quality and its culinary implications. This study evaluates the influence of RR composition and its water interaction. Nutritional composition was measured. A drying process was conducted to raise the drying critical processing points/periods using an incubator with airflow (1 m/s) at 60 °C. Empirical models were applied to assess the response of the biological material and ensure a good fit. The experiments and statistical analyses were conducted in triplicate. Principal Component Analysis (PCA) was employed to evaluate the correlation between drying periods and the nutritional composition. Results revealed that the nutritional composition influenced the drying critical points/periods. The applied models adjusted well for 'MNA-PB-901', 'MNA-PB-902', and 'MNA-PB-405', while Page's model best fit the experimental data for 'CAQUI' and 'MARANHÃO'. PCA analysis indicated that carbohydrates and amylose impacted superficial water content. A positive correlation was observed between the ash content and "D" point, and crude Fibre and "E" point.

CARDIOVASCULAR DISEASE, SIGNALING, GENE/CELL THERAPY AND ADVANCED NANOBIOMATERIALS

Cardiovascular biomaterials (also known as CB) are the most common type of biomaterials, both in terms of investments and demand. This review article compiles information on the CB and categorizes it into three primary categories: metals, polymers, and biological materials. Blood compatibility is one of the primary parameters that restricts the use of biomaterials for cardiovascular applications. Within the scope of this study, a number of significant figures concerning blood compatibility are investigated. There were a variety of surface modification techniques that were being utilized at the moment in order to enhance the compatibility of the CB. For the purpose of gaining a deeper comprehension, a number of contemporary applications of surface modification techniques on materials for cardiovascular devices were also discussed. Last but not least, the utilization of induced human pluripotent stem cells, the endothelization of cardiac implants, and the current trend of CB. As a result of the rapid expansion of the field of CB, a significant number of new researchers and academics are developing an interest in it. This overview will serve as a one-stop shop for quickly gaining an understanding of the fundamental studies that have been conducted in the field of CB.

Capillary-Electrophoresis-Based Species Barcoding of Big Cats: CR-mtDNA-Length Polymorphism.

This study aimed to provide an overview of the methodological approach used for the species determination of big cats. The molecular system described herein employs mitochondrial DNA control region (CR-mtDNA)-length polymorphism in combination with highly sensitive and precise capillary electrophoresis. We demonstrated that the described CR-mtDNA barcoding system can be utilized for species determination where the presence of biological material from big cats is expected or used as a confirmatory test alongside Sanger or massive parallel sequencing (MPS). We have also addressed the fact that species barcoding, when based on the analysis of mtDNA targets, can be biased by nuclear inserts of the mitochondrial genome (NUMTs). The CR-mtDNA barcoding system is suitable even for problematic and challenging samples, such as hair. CR-mtDNA-length polymorphisms can also distinguish hybrids from pure breeds.

Biological material spider silk by direct incorporation onto fiber ferrule for wavelength tunable Q-switched application

This study presents a novel structure saturable absorber (SSA) based on spider silk for wavelength tunable Q-switched erbium-doped fiber laser (EDFL) operation from S to L bands. The nonlinear optical absorption of spider silk was measured, showing a high modulation depth of 64.92%, a low saturation intensity of 0.03 MW cm−2, and a non-saturable loss of 24%. By adjusting the polarization controller, a wavelength tunable Q-switched EDFL was achieved, with a tuning range of 64 nm from 1522 nm to 1586 nm. The Q-switched pulses had a repetition rate varying from 20.62 kHz to 6.57 kHz and a pulse width ranging from 14.02 μs to 26.30 μs, corresponding to an output power from −11.31 dBm to −9.02 dBm at the maximum pump power of 151.40 mW. The proposed SSA using spider silk offers a low-cost, eco-friendly, and high-performance solution for wide wavelength tunable Q-switched EDFL applications in optical testing, fiber communication, optical fiber sensing, and ultrafast lasers.