Skin bacterial richness and diversity in ICU patients with severe pneumonia. Abstract Patients with severe pneumonia admitted to the intensive care unit (ICU) have a high risk of mortality, and the microbiome is likely to affect the outcome of ICU pa... Read More
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Skin bacterial richness and diversity in ICU patients with severe pneumonia.
- International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases
on May 6, 2022
De novo variants in the PABP domain of PABPC1 lead to developmental delay.
- Genetics in medicine : official journal of the American College of Medical Genetics
on May 5, 2022
De novo variants in the PABP domain of PABPC1 lead to developmental delay. Abstract The study aimed to investigate the role of PABPC1 in developmental delay (DD). Children were examined by geneticists and pediatricians. Variants were identified using... Read More
Differential mRNA Expression in Ileal and Colonic Biopsies in Irritable Bowel Syndrome with Diarrhea or Constipation.
- American journal of physiology. Gastrointestinal and liver physiology
on May 3, 2022
Differential mRNA Expression in Ileal and Colonic Biopsies in Irritable Bowel Syndrome with Diarrhea or Constipation. Abstract Altered mucosal functions are documented in jejunal or colorectal mucosa from patients with IBS. To quantify ileal, ascendi... Read More
Expression-based species deconvolution and realignment removes misalignment error in multispecies single-cell data.
- BMC bioinformatics
- VOL. 23
on May 2, 2022
Expression-based species deconvolution and realignment removes misalignment error in multispecies single-cell data. Abstract Although single-cell RNA sequencing of xenograft samples has been widely used, no comprehensive bioinformatics pipeline is av... Read More
Tailer: a pipeline for sequencing-based analysis of nonpolyadenylated RNA 3' end processing.
- RNA (New York, N.Y.)
- VOL. 28
on May 1, 2022
Tailer: a pipeline for sequencing-based analysis of nonpolyadenylated RNA 3 ' end processing. Abstract Post-transcriptional trimming and tailing of RNA 3 ' ends play key roles in the processing and quality control of noncoding RNAs (ncRNAs). However,... Read More
Dominant transcript expression profiles of human protein-coding genes interrogated with GTEx dataset.
- Scientific reports
- VOL. 12
on Apr 28, 2022
Abstract The discovery and quantification of mRNA transcripts using short-read next-generation sequencing (NGS) data is a complicated task. There are far more alternative mRNA transcripts expressed by human genes than can be identified from NGS trans... Read More
Incipient speciation between host-plant strains in the fall armyworm.
- BMC ecology and evolution
- VOL. 22
on Apr 27, 2022
Incipient speciation between host-plant strains in the fall armyworm. Abstract Recent advancement in speciation biology proposes that genetic differentiation across the whole genome (genomic differentiation, GD) may occur at the beginning of a specia... Read More
Differential expression of an endogenous retroviral element [HERV-K(HML-6)] is associated with reduced survival in glioblastoma patients.
- Scientific reports
- VOL. 12
on Apr 27, 2022
Differential expression of an endogenous retroviral element [ HERV-K (HML-6) ] is associated with reduced survival in glioblastoma patients. Abstract Comprising approximately 8 % of our genome, Human Endogenous RetroViruses (HERVs) represent a class ... Read More
<scp>snpfiltr</scp> : An R package for interactive and reproducible SNP filtering
- Molecular Ecology Resources
on Apr 24, 2022
Abstract Here, I describe the R package snpfiltr and demonstrate its functionality as the backbone of a customizable, reproducible single nucleotide polymorphism (SNP) filtering pipeline implemented exclusively via the widely adopted R programming la... Read More
Technical Performance of a 430-Gene Preventative Genomics Assay to Identify Multiple Variant Types Associated with Adult-Onset Monogenic Conditions, Susceptibility Loci, and Pharmacogenetic Insights
- Journal of Personalized Medicine
- VOL. 12
on Apr 21, 2022
Technical Performance of a 430-Gene Preventative Genomics Assay to Identify Multiple Variant Types Associated with Adult-Onset Monogenic Conditions, Susceptibility Loci, and Pharmacogenetic Insights Abstract DNA-based screening in individuals without... Read More
PEGR: a flexible management platform for reproducible epigenomic and genomic research
- Genome Biology
- VOL. 23
on Apr 19, 2022
PEGR: a flexible management platform for reproducible epigenomic and genomic research Abstract eproducibility is a significant challenge in (epi) genomic research due to the complexity of experiments composed of traditional biochemistry and informati... Read More
PEGR: a flexible management platform for reproducible epigenomic and genomic research.
- Genome biology
- VOL. 23
on Apr 19, 2022
PEGR: a flexible management platform for reproducible epigenomic and genomic research. Abstract Reproducibility is a significant challenge in (epi) genomic research due to the complexity of experiments composed of traditional biochemistry and informa... Read More
Asymmetric Contribution of Blastomere Lineages of First Division of the Zygote to Entire Human Body Using Post-Zygotic Variants
- Tissue Engineering and Regenerative Medicine
on Apr 19, 2022
Asymmetric Contribution of Blastomere Lineages of First Division of the Zygote to Entire Human Body Using Post-Zygotic Variants Abstract In humans, after fertilization, the zygote divides into two 2n diploid daughter blastomeres. During this division... Read More
COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data
- BMC bioinformatics
- VOL. 23
on Apr 15, 2022
Abstract SARS-CoV-2 virus sequencing has been applied to track the COVID-19 pandemic spread and assist the development of PCR-based diagnostics, serological assays, and vaccines. With sequencing becoming routine globally, bioinformatic tools are need... Read More
Gut Dysbiosis in Ocular Mucous Membrane Pemphigoid
- Frontiers in Cellular and Infection Microbiology
- VOL. 12
on Apr 14, 2022
Abstract Mucous Membrane Pemphigoid is an orphan multi-system autoimmune scarring disease involving mucosal sites, including the ocular surface (OcMMP) and gut. Loss of tolerance to epithelial basement membrane proteins and generation of autoreactive... Read More
Joint Analysis of Microbial and Immune Cell Abundance in Liver Cancer Tissue Using a Gene Expression Profile Deconvolution Algorithm Combined With Foreign Read Remapping
- Frontiers in Immunology
- VOL. 13
on Apr 14, 2022
Joint Analysis of Microbial and Immune Cell Abundance in Liver Cancer Tissue Using a Gene Expression Profile Deconvolution Algorithm Combined With Foreign Read Remapping Abstract Recent transcriptomics and metagenomics studies showed that tissue-infi... Read More
The Need for Standardization in Next-Generation Sequencing Studies for Classic Hodgkin Lymphoma
- Diagnostics
- VOL. 12
on Apr 12, 2022
The Need for Standardization in Next-Generation Sequencing Studies for Classic Hodgkin Lymphoma Abstract Classic Hodgkin lymphoma (cHL) constitutes a B cell-derived neoplasm defined by a scarce tumoral population, termed Hodgkin and Reed – Sternberg ... Read More
The Need for Standardization in Next-Generation Sequencing Studies for Classic Hodgkin Lymphoma: A Systematic Review.
- Diagnostics (Basel, Switzerland)
- VOL. 12
on Apr 12, 2022
Abstract Classic Hodgkin lymphoma (cHL) constitutes a B cell-derived neoplasm defined by a scarce tumoral population, termed Hodgkin and Reed-Sternberg (HRS) cells, submerged into a histologically heterogeneous microenvironment. The paucity of HRS ce... Read More
Single-focus phase singularity generated by spiral zone plate with quasi-random distributed quantum dots
- Journal of Physics D: Applied Physics
on Apr 12, 2022
Single-focus phase singularity generated by spiral zone plate with quasi-random distributed quantum dots Abstract AbstractWe report new vortex lens for producing single-focus phase singularity which termed as quasi-random-dot-array binary spiral zone... Read More
Marek’s Disease Virus Virulence Genes Encode Circular RNAs
- Journal of Virology
on Apr 12, 2022
Abstract Circular RNAs (circRNAs) are a recently rediscovered class of functional noncoding RNAs that are involved in gene regulation and cancer development. Next-generation sequencing approaches identified circRNA fragments and sequences underlying ... Read More