Diversity of carbapenemase-producing Enterobacterales in England as revealed by whole-genome sequencing of isolates referred to a national reference laboratory over a 30-month period Abstract Introduction. Increasing numbers of carbapenemase-producin... Read More
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Diversity of carbapenemase-producing Enterobacterales in England as revealed by whole-genome sequencing of isolates referred to a national reference laboratory over a 30-month period
- Journal of Medical Microbiology
- VOL. 71
on May 23, 2022
Application of Dual Metabarcoding Platforms for the Meso- and Macrozooplankton Taxa in the Ross Sea
- Genes
- VOL. 13
on May 21, 2022
Application of Dual Metabarcoding Platforms for the Meso - and Macrozooplankton Taxa in the Ross Sea Abstract Meso - and macrozooplankton play crucial roles in the trophic web and the biological carbon pump in the ocean by transferring energy from lo... Read More
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.
- iScience
- VOL. 25
on May 20, 2022
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation. Abstract Understanding the regulation of normal and malignant human hematopoiesis requires comprehensive cell atlas of the hematop... Read More
Algorithmic reconstruction of glioblastoma network complexity.
- iScience
- VOL. 25
on May 20, 2022
Algorithmic reconstruction of glioblastoma network complexity. Abstract Glioblastoma is a complex disease that is difficult to treat. Network and data science offer alternative approaches to classical bioinformatics pipelines to study gene expression... Read More
Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant species
- BMC Genomics
- VOL. 23
on May 19, 2022
Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant species Abstract AbstractBackgroundPrevious studies on plant long noncoding RNAs (lncRNAs) lacke... Read More
Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant species.
- BMC genomics
- VOL. 23
on May 19, 2022
Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant species. Abstract Previous studies on plant long noncoding RNAs (lncRNAs) lacked consistency and... Read More
Secreted Hepatitis B virus splice variants differ by <scp>HBV</scp> genotype and across phases of chronic hepatitis B infection
- Journal of Viral Hepatitis
on May 18, 2022
Secreted Hepatitis B virus splice variants differ by <scp> HBV </scp> genotype and across phases of chronic hepatitis B infection Abstract Chronic hepatitis B (CHB) is characterized by progression through different phases of hepatitis B virus (HBV) i... Read More
Successes and limitations of quantitative diet metabarcoding in a small, herbivorous mammal
- Molecular Ecology Resources
on May 17, 2022
Successes and limitations of quantitative diet metabarcoding in a small, herbivorous mammal Abstract DNA metabarcoding is widely used to determine wild animal diets, however whether this technique provides accurate, quantitative measurements is still... Read More
Mining and validation of novel simple sequence repeat (SSR) markers derived from coconut (Cocos nucifera L.) genome assembly
- Journal of Genetic Engineering and Biotechnology
- VOL. 20
on May 16, 2022
Mining and validation of novel simple sequence repeat (SSR) markers derived from coconut (Cocos nucifera L.) genome assembly Abstract In the past, simple sequence repeat (SSR) marker development in coconut is achieved through microsatellite probing i... Read More
MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification.
- Bioinformatics (Oxford, England)
- VOL. 38
on May 13, 2022
MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification. Abstract Taxonomic classification of 16S ribosomal RNA gene amplicon is an efficient and economic approach in microbiome analysis. 16S rRNA sequ... Read More
CeRNAshiny: An Interactive R/Shiny App for Identification and Analysis of ceRNA Regulation
- Frontiers in Molecular Biosciences
- VOL. 9
on May 13, 2022
Abstract The competing endogenous RNA (ceRNA) network is a newly discovered post-transcriptional regulation that controls both physiological and pathological progresses. Increasing research studies have been pivoted on this theory to explore the func... Read More
Marek’s Disease Virus Virulence Genes Encode Circular RNAs
- Journal of virology
- VOL. 96
on May 11, 2022
Abstract Circular RNAs (circRNAs) are a recently rediscovered class of functional noncoding RNAs that are involved in gene regulation and cancer development. Next-generation sequencing approaches identified circRNA fragments and sequences underlying ... Read More
Recommendations for IVDR compliant in-house software development in clinical practice: a how-to paper with three use cases
- Clinical Chemistry and Laboratory Medicine (CCLM)
- VOL. 60
on May 11, 2022
Recommendations for IVDR compliant in-house software development in clinical practice: a how-to paper with three use cases Abstract AbstractObjectivesThe In Vitro Diagnostics Regulation (IVDR) will be effective in May 2022 by which in-house developed... Read More
Repeated transmission of SARS-CoV-2 in an overcrowded Irish emergency department elucidated by whole genome sequencing.
- The Journal of hospital infection
on May 10, 2022
Repeated transmission of SARS-CoV-2 in an overcrowded Irish emergency department elucidated by whole genome sequencing. Abstract To provide a detailed genomic-epidemiological description of a complex multi-ward SARS-CoV-2 outbreak, which originated i... Read More
Editorial: Machine Learning Used in Biomedical Computing and Intelligence Healthcare, Volume II
- Frontiers in Genetics
- VOL. 13
on May 9, 2022
Exploring epitranscriptomics for crop improvement and environmental stress tolerance.
- Plant physiology and biochemistry : PPB
- VOL. 183
on May 7, 2022
Exploring epitranscriptomics for crop improvement and environmental stress tolerance. Abstract Climate change and stressful environmental conditions severely hamper crop growth, development and yield. Plants respond to environmental perturbations, th... Read More
Identification and Functional Characterization of Peptides With Antimicrobial Activity From the Syphilis Spirochete, Treponema pallidum
- Frontiers in Microbiology
- VOL. 13
on May 3, 2022
Abstract The etiological agent of syphilis, Treponema pallidum ssp. pallidum, is a highly invasive “ stealth ” pathogen that can evade the host immune response and persist within the host for decades. This obligate human pathogen is adept at establis... Read More
Differential mRNA Expression in Ileal and Colonic Biopsies in Irritable Bowel Syndrome with Diarrhea or Constipation
- American journal of physiology. Gastrointestinal and liver physiology
on May 3, 2022
Differential mRNA Expression in Ileal and Colonic Biopsies in Irritable Bowel Syndrome with Diarrhea or Constipation Abstract Altered mucosal functions are documented in jejunal or colorectal mucosa from patients with IBS. To quantify ileal, ascendin... Read More
Expression-based species deconvolution and realignment removes misalignment error in multispecies single-cell data
- BMC Bioinformatics
- VOL. 23
on May 2, 2022
Expression-based species deconvolution and realignment removes misalignment error in multispecies single-cell data Abstract BackgroundAlthough single-cell RNA sequencing of xenograft samples has been widely used, no comprehensive bioinformatics pipel... Read More
Functional biodynamics theory and algorithms for inhibitor or activator effectors and their interactions, by computer simulation bioinformatics for translational medicine.
- FASEB journal : official publication of the Federation of American Societies for Experimental Biology
- VOL. Suppl 36 1
on May 1, 2022
Functional biodynamics theory and algorithms for inhibitor or activator effectors and their interactions, by computer simulation bioinformatics for translational medicine. Abstract The conventional bottom-to-up approach of R&D is usually: aims, desig... Read More