Biogeographic Information Research Articles

Marine dinocysts, acritarchs and less well-known NPP: tintinnids, ostracod and foraminiferal linings, copepod and worm remains

Abstract Nine non-pollen palynomorph (NPP) groups occur in Quaternary marine and brackish-water sediments; these groups represent various planktonic or micro- to macrobenthic organisms. Some extant NPP were previously classified as fossil Acritarcha, Chitinozoa or scolecodonts. We refer to reviews of these fossils and their applications for Paleozoic–Mesozoic biostratigraphy and palaeoecology but focus on extant marine NPP that can be studied by laboratory culture, genetics or micro-geochemical methods. Marine NPP include resting cysts of planktonic dinoflagellates and prasinophytes, tintinnids and other cilates, copepod eggs and skeletal remains, and various microzoobenthos: microforaminiferal organic linings, ostracod mandibles and carapace linings, various worm egg capsules and mouthparts. New micro-Fourier Transform Infrared spectroscopy spectra suggest the probable affinities of the tintinnid cyst type P and Beringiella . Our applications in marine biodiversity and provincialism studies emphasize under-studied polar regions and neglected ice-algae nano-plankton and compare climate-based NPP distributions to Ocean Biogeographic Information System realms. Trophic relationships are outlined using sediment-trap studies. Seasonal to annual-scale investigations of palaeoproduction provide new perspectives on ocean carbon budgets during times of rapid climate change and atmospheric carbon increase. More taxonomic and source-linkage studies of non-dinocyst marine NPP are needed but we outline potentials for studies of hemispheric or global-scale shifts in marine food webs as driven by ocean warming.

Cephalopods habitat and trophic ecology: historical data using snares penguin as biological sampler

In the Southern Ocean and adjacent waters, early stages of cephalopods play an important role in food webs as prey to top predators, but few is known regarding their biology and availability. Snares Penguin, Eudyptes robustus, is a top predator endemic to Snares Islands (New Zealand) that feed on cephalopods. As historical data on diet are rare for this species, Snares Penguins were used as biological samplers to evaluate the cephalopod component of its diet, where habitat and trophic level of cephalopods around the Snares Islands was assessed through stable isotope analysis. Moreover, ontogenic changes of juvenile squid were evaluated. Data collection were carried out during the breeding season 1986–87 and its analysis revealed that penguins fed on three juvenile cephalopod species: two squids (Nototodarus sloanii and Moroteuthopsis ingens) and one octopod (Octopus campbelli). Nototodarus sloanii was the most important species in frequency of occurrence and mass, whereas M. ingens was the most important in number. Juvenile squid species showed similar δ13C values, suggesting both occupied similar habitats on the Snares shelf, whereas juvenile O. campbelli showed lower δ13C values. Moreover, O. campbelli fed on higher trophic level (δ15N) prey relative to squid species. Lower diversity and larger sizes of cephalopods were found when compared with data from 2002. This study shows that Snares Penguin can be a good local biological sampler of juvenile cephalopods during their breeding season, providing both essential biogeographic information of cephalopod diversity and relevant historical information for the conservation of this endemic penguin species.

A new free-living marine nematode species of the genus <i>Belbolla</i> (Enoplida, Enchelidiidae) from a subtidal zone of the East Sea, Korea, with some ecological and biogeographical information

A new free-living marine nematode species of the genus Belbolla Andrassy, 1973 belonging to the family Enchelidiidae is described based on specimens collected from the sediment of a subtidal benthic environmental habitat in the East Sea, Korea. Belbolla wonkimi sp. nov. differs from its congeners by the combination of the following characteristics: a relatively long body (3263-3396 μm), the absence of ocelli, nine oesophageal bulbs in the posterior pharynx, well-developed two winged precloacal supplements, longer spicule length (115-130 μm, 1.6-1.8 anal body diameter long), and a triangle-shaped shorter gubernacular apophysis (17-18 μm). Comparative tables on the biogeographical and morphological characteristics of Belbolla species are presented. A DIC (differential interference contrast) photomicrograph of the new species is also provided. This is the first taxonomic report on the genus Belbolla from Korean waters.

Upper Bathyal Pacific Ocean biogeographic provinces from octocoral distributions

Biogeographical classification schemes such as the Marine Ecoregions of the World (MEOW) have been developed for continental shelf depths. The lack of faunal data in the deep sea has led to the development of biogeographical units based on oceanographic characteristics. The aim of this study was to propose biogeographical schemes for the Upper Bathyal (200–1000 m) across the Pacific Ocean using octocoral distributions. We retrieved over 200 000 octocoral data records from the Deep Sea Coral Data Portal (DSCDP), Ocean Biogeographic Information System (OBIS), Tropical Deep-Sea Benthos program (French National Museum of Natural History), Queensland Museum from the CIDARIS expeditions, and records retrieved from the Siboga expedition reports. We used cluster analysis to examine octocoral distributions against four different biogeographical classification schemes. The classification schemes produced mostly concordant patterns with three major faunal distribution barriers: the North Pacific Current isolates the subarctic units by creating a steep temperature gradient; the Subantarctic Front separates the Subantarctic from the rest of the Pacific; and the East Pacific Barrier separates the East Pacific from the Central and West Pacific. Two other smaller but distinct provinces are the Indo-Pacific where Lower Bathyal genera are found in the Upper Bathyal, and Torres Strait/Coral Sea characterised by mesophotic genera. We propose 12 biogeographic provinces across the Pacific Ocean Upper Bathyal region from 200 to 1000 m depth based on octocoral distributions. The main driver for these units seems to be temperature, a defining feature of water masses. These units could potentially be subdivided into smaller regions based on habitat. Additionally, the clustering of Ecological Marine Units (EMUs) provides evidence that the Upper Bathyal should in certain regions be divided vertically into two depth zones based on water masses.

The Subhabitat Dependence of Biogeographic Pattern

We introduce and test the subhabitat dependence hypothesis (SDH) in biogeography. This hypothesis posits that biogeographic pattern within a region differs when determined with species abundance data from different subhabitat types. It stems from the notion that the main abiotic factors that drive species distribution in different subhabitat types across a biogeographic region often vary differently across space. To test the SDH, we measured the abundance of algae and sessile invertebrates in two different subhabitats (high intertidal zone and mid-intertidal zone) at eight locations along the Atlantic Canadian coast. We conducted multivariate analyses of the species abundance data to compare alongshore biogeographic pattern between both zones. For both subhabitat types, location groupings based on community similarity not always responded to geographic proximity, leading to biogeographic patchiness to some extent. Nonetheless, both biogeographic patterns were statistically unrelated, thus supporting the SDH. This lack of concordance was most evident for southern locations, which clustered together based on high-intertidal data but showed considerable alongshore patchiness based on mid-intertidal data. We also found that the ordination pattern of these eight locations based on sea surface temperature data was significantly related to biogeographic pattern for the mid-intertidal zone but not for the high intertidal zone. This finding supports the rationale behind the SDH due to the longer periods of submergence experienced by the mid-intertidal zone. Overall, we conclude that biogeographic pattern within a region can depend on the surveyed subhabitat type. Thus, biological surveys restricted to specific subhabitats may not properly reveal biogeographic pattern for a biota as a whole or even just for other subhabitats. As many studies generate biogeographic information with data only for specific subhabitats, we recommend testing the SDH in other systems to determine its domain of application.

Fossilization potential of marine assemblages and environments

AbstractThe fossil record provides the only direct record of the history of life, but it is an incomplete one. Discriminating between what is absent and what is simply not preserved is critical to macroevolutionary and macroecological inferences. A comparison of diversity data in over 20,000 modern marine assemblages from the Ocean Biogeographic Information System database (OBIS) with fossil occurrence data from the Paleobiology Database (PBDB) yielded a global assessment of assemblage-level fossilization potential. We used two different metrics, taxon fossilization potential and within-environment fossilization potential, to assess the proportion of taxa in a modern community with PBDB occurrences or with PBDB occurrences in the same environment, respectively. Taxon fossilization potential of marine genera varies between environments, from 34% in shallow and deep water to 44% in coral reefs, 51% on seamounts, and 15% in pelagic assemblages. Within-environment fossilization potential, in contrast, does not exceed 32% (in shallow water), a lower value than that obtained in other studies, and it may be zero (on seamounts and pelagic environments). These differences are mainly a product of representation in the rock record and sampling biases rather than taxon duration.

Using the Darwin Core Standard for Estimated Records

The Darwin Core Standard is a widely shared data standard within the ecological community. Despite recent developments on sampling events and abiotic records (De Pooter 2017), the Darwin Core only allows recording raw data, while public policies and biodiversity evaluations often need synthetic, estimated data. To be reliable, those estimation records, such as population size, population density, community diversity, and primary production, need to display statistical characteristics, such as standard error. Within the Enetwild consortium (https://enetwild.com/), financed by the European Food and Safety Authority (EFSA), we face this issue while aggregating data across European countries on wildlife surveys: occurrences, abundances and hunting bags. We therefore propose a revision to the Darwin Core Standard, taking advantage of the recent development corresponding to the Event core of the European Biodiversity Observatory Network and the extended measurement or fact of the Ocean Biogeographic Information System (De Pooter 2017). The proposed nested extended measurement or fact extension allows the recording of estimated densities with their confidence intervals or other precision measurements. It allows a measurement (the confidence interval, the variance) to be nested within another measurement value (e.g., the point estimation). We also provide metadata to record the useful statistical procedure information to best evaluate and use these data. We believe this development will be useful for all institutions aggregating results, especially the international Essential Biodiversity Variables community, allowing them to aggregate results data along with raw data. The full technical report is published on EFSA website (Enetwild consortium et al. 2020).

Distributional records of Ross Sea (Antarctica) planktic Copepoda from bibliographic data and samples curated at the Italian National Antarctic Museum (MNA): checklist of species collected in the Ross Sea sector from 1987 to 1995

Distributional data on planktic copepods (Crustacea, Copepoda) collected in the framework of the IIIrd, Vth, and Xth Expeditions of the Italian National Antarctic Program (PNRA) to the Ross Sea sector from 1987 to 1995 are here provided. Sampling was performed with BIONESS and WP2 nets at 94 sampling stations at depths of 0–1,000 m, with a special focus on the Terra Nova Bay area. Altogether, this dataset comprises 6,027 distributional records, out of which 5,306 were obtained by digitizing original data reports and 721 are based on physical museum vouchers curated by the Italian National Antarctic Museum (MNA, Section of Genoa). The MNA samples include 8,224 individual specimens that were identified to the lowest possible taxonomic level. They belong to four orders, 25 families, 52 genera, and 82 morphological units (out of which 17 could be determined at the genus level only). A variety of environmental data were also recorded at each of the sampling stations, and we report original abundances (ind/m3) to enable future species distribution modelling. From a biogeographic point of view, the distributional data here reported represented new records for the Global Biogeographic Information Facility (GBIF) registry. In particular, 62% of the total number of species are new records for the Ross Sea sector and another 28% new records for the Antarctic region.

A biogeographic–ecological approach to disentangle reticulate evolution in the Triatoma phyllosoma species group (Heteroptera: Triatominae), vectors of Chagas disease

Introgression and incomplete lineage sorting (ILS) are two of the main sources of gene-tree incongruence; both can confound the assessment of phylogenetic relationships among closely related species. The Triatoma phyllosoma species group is a clade of partially co-distributed and cross-fertile Chagas disease vectors. Despite previous efforts, the phylogeny of this group remains unresolved, largely because of substantial gene-tree incongruence. Here, we sequentially address introgression and ILS to provide a robust phylogenetic hypothesis for the T. phyllosoma species group. To identify likely instances of introgression prior to molecular scrutiny, we assessed biogeographic data and information on fertility of inter-specific crosses. We first derived a few explicit hybridization hypotheses by considering the degree of spatial overlap within each species pair. Then, we assessed the plausibility of these hypotheses in the light of each species pair's cross-fertility. Using this contextual information, we evaluated mito-nuclear (cyt b, ITS-2) gene-tree incongruence and found evidence suggesting introgression within two species pairs. Finally, we modeled ILS using a Bayesian multispecies coalescent approach and either (a) a “complete” dataset with all the specimens in our sample, or (b) a “filtered” dataset without putatively introgressed specimens. The “filtered tree” had higher posterior-probability support, as well as more plausible topology and divergence times, than the “complete tree.” Detecting and filtering out introgression and modeling ILS allowed us to derive an improved phylogenetic hypothesis for the T. phyllosoma species group. Our results illustrate how biogeographic and ecological-reproductive contextual information can help clarify the systematics and evolution of recently diverged taxa prone to introgression and ILS.

Fimicolous myxomycetes: overview of their global distribution and scientific production

Myxomycetes (Amoebozoa) can be found on a wide range of substrates and among these, the dung of several animal species, primarily herbivorous, in which case they are considered fimicolous. Dung can be a favourable substrate for myxomycete due its relatively high content of water, nutrients and microorganisms. Despite efforts to study fimicolous myxomycetes, there are still informational gaps on the geographical distribution and microhabitat details. Also, scientometric information on these organisms is scarce. This work was aimed to compile the occurrence of fimicolous myxomycetes, from published literature, for the period between 1900 and 2017, resulting in an update on their biogeographical and ecological information. Scientific production involving fimicolous myxomycetes is also discussed. Ninety-eight articles were retrieved, from which authors recorded a total of 544 occurrences classified in 126 myxomycetes species. These records were geographically associated with 51 countries, located primarily on the northern hemisphere. Most occurrences were reported on herbivore dung, mainly from cattle, horse, deer, rabbit/hare, sheep and camel. Arcyria cinerea, Didymium difforme, D. iridis, D. squamulosum, Fuligo cinerea, Kelleromyxa fimicola, Licea tenera, Perichaena chrysosperma, P. corticalis, P. depressa, Physarum apiculosporum, Ph. compressum, and Ph. didermoides were the most frequent species, with at least 10 records each. Despite an increase in scientific production on fimicolous myxomycetes during the studied period, the number of researchers dedicated to this group is low and the inter-institutional collaboration could be improved. It was observed that most authors have produced only one publication, claimed not to be specialists on the group and that tropical fimicolous myxomycetes have clearly been understudied. It is suggested that thematic networks and methodological standardization in molecular studies could increase and improve research on fimicolous myxomycetes. We highlight the importance of the inter-institutional partnership between researchers interested in the study of fimicolous myxomycetes, once access to these technologies is limited for many researchers, especially those in underdeveloped countries, such as Latin American, the formation of collaborative networks may facilitate the application of molecular approaches.

Genetic Diversity and Phylogeography of the Important Medical Herb, Cultivated Huang-Lian Populations, and the Wild Relatives Coptis Species in China.

Huang-lian (Coptis plants in China) are essential medicinal plants in China, C. chinensis var. chinensis and C. deltoidea have been domesticated and cultivated for 700 years. In this study, the genetic diversity patterns and biogeographical information of cultivated Huang-lian and their wild relatives Coptis species were assessed using three plastids DNA regions. A total of 186 individuals from twenty-seven populations representing two species of cultivated Huang-lian and four species of wild relatives were collected and analyzed. Twenty-four haplotypes of six species were identified when three plastid spacers were combined. Historical biogeography inference revealed multiple dispersal events in the groups of cultivated Huang-lian and C. omeiensis. This evidence can infer that large initial population size and interbreeding with co-existing wild relatives in expanding new planting areas might be the main reason for maintaining the high genetic diversity of cultivated Huang-lian. Nevertheless, the multimodal curve of mismatch analysis and positive or negative differed among species and populations by neutrality tests indicated some groups of cultivated Huang-lian experienced genetic bottlenecks. Phylogeny analysis (NJ, MP, BI) showed that cultivated Huang-lian and C. omeiensis were clustered into a monophyletic group while C. chinensis var. brevisepala was paraphyletic, having earlier divergence time from C. chinensis var. chinensis (7.6 Ma) than C. omeiensis. Parsimony network demonstrated that C. deltoidea had more shared haplotypes with C. omeiensis than C. chinensis var. chinensis, and other haplotypes of C. deltoidea and C. omeiensis had less mutation steps than that of C. chinensis var. chinensis and C. omeiensis. This evidence suggests that C. omeiensis has a closer relationship with cultivated Huang-lian and might be a potential wild relative to C. deltoidea. The results reported here provide the baseline data for preserving genetic resources of Huang-lian and also evaluating the genetic impacts of long-term cultivation on medicinal plants, which could be instructive to future cultivation projects of traditional Chinese medicinal plants.

Ecological Specialization and Rarity of Arable Weeds: Insights from a Comprehensive Survey in France.

The definition of “arable weeds” remains contentious. Although much attention has been devoted to specialized, segetal weeds, many taxa found in arable fields also commonly occur in other habitats. The extent to which adjacent habitats are favorable to the weed flora and act as potential sources of colonizers in arable fields remains unclear. In addition, weeds form assemblages with large spatiotemporal variability, so that many taxa in weed flora are rarely observed in plot-based surveys. We thus addressed the following questions: How often do weeds occur in other habitats than arable fields? How does including field edges extend the taxonomic and ecological diversity of weeds? How does the weed flora vary across surveys at different spatial and temporal scales? We built a comprehensive dataset of weed taxa in France by compiling weed flora, lists of specialized segetal weeds, and plot-based surveys in agricultural fields, with different spatial and temporal coverages. We informed life forms, biogeographical origins and conservation status of these weeds. We also defined a broader dataset of plants occupying open habitats in France and assessed habitat specialization of weeds and of other plant species absent from arable fields. Our results show that many arable weeds are frequently recorded in both arable fields and non-cultivated open habitats and are, on average, more generalist than species absent from arable fields. Surveys encompassing field edges included species also occurring in mesic grasslands and nitrophilous fringes, suggesting spill-over from surrounding habitats. A total of 71.5% of the French weed flora was not captured in plot-based surveys at regional and national scales, and many rare and declining taxa were of Mediterranean origin. This result underlines the importance of implementing conservation measures for specialist plant species that are particularly reliant on arable fields as a habitat, while also pointing out biotic homogenization of agricultural landscapes as a factor in the declining plant diversity of farmed landscapes. Our dataset provides a reference species pool for France, with associated ecological and biogeographical information.

Toxic marine microalgae and noxious blooms in the Mediterranean Sea: A contribution to the Global HAB Status Report

We review the spatial distribution of toxic marine microalgal species and the impacts of all types of harmful algal events (Harmful Algal Blooms, HABs) in the Mediterranean Sea (MS), including the Black Sea, the Sea of Marmara, coastal lagoons and transitional waters, based on two databases compiled in the Ocean Biogeographic Information System (OBIS). Eighty-four potentially toxic species have been detected in the MS (2,350 records), of which 16 described from these waters between 1860 and 2014 and a few suspected to have been introduced. More than half of these species (46) produce toxins that may affect human health, the remainders ichthyotoxic substances (29) or other types of toxins (9). Nevertheless, toxicity-related events are not frequent in the MS (308 records in 31 years), and mainly consist of impacts on aquaculture, caused by the dinoflagellates Dinophysis and Alexandrium, along with a few actual shellfish poisoning cases. Pseudo-nitzschia blooms are widespread, but domoic acid in shellfish rarely exceeds regulatory levels. Fish kills are probably less sporadic than reported, representing a problem at a few places along the southern MS coasts and in the Ebro River Delta. Since the last decade of the 20th century, blooms of the benthic dinoflagellates Ostreopsis cf. ovata have regularly occurred all along rocky shores of the MS, at times with human health problems caused by toxic aerosol. New records of Gambierdiscus and Fukuyoa, until now reported for the westernmost and easternmost MS coasts, raise concerns about the risk of ciguatera, a syndrome so far known only for subtropical and tropical areas. Recent discoveries are the dinoflagellates Vulcanodinium rugosum, responsible for the presence of pinnatoxins in French lagoons’ shellfish, and the azaspiracid-producers Azadinium spp. Mucilages and discolorations have a major impact on tourism in summer. Reports of toxic species and HABs have apparently increased in the MS over the last half century, which is likely related to the increased awareness and monitoring operations rather than to an actual increase of these phenomena. Indeed, while the case of Ostreopsis appears as a sudden upsurge rather than a trend, no actual increase of toxic or noxious events has so far emerged in intensively studied areas, such as the French and Spanish coasts or the Adriatic Sea. Moreover, some cases of decrease are reported, e.g., for Alexandrium minutum blooms disappearing from the Harbour of Alexandria. Overall, main HAB risks derive from cases of massive development of microalgal biomass and consequent impacts of reduced coastal water quality on tourism, which represents the largest part of the marine economy along the MS coasts.

Collagen Sequence Analysis Reveals Evolutionary History of Extinct West Indies Nesophontes (Island-Shrews).

Ancient biomolecule analyses are proving increasingly useful in the study of evolutionary patterns, including extinct organisms. Proteomic sequencing techniques complement genomic approaches, having the potential to examine lineages further back in time than achievable using ancient DNA, given the less stringent preservation requirements. In this study, we demonstrate the ability to use collagen sequence analyses via proteomics to assist species delimitation as a foundation for informing evolutionary patterns. We uncover biogeographic information of an enigmatic and recently extinct lineage of Nesophontes across their range on the Caribbean islands. First, evolutionary relationships reconstructed from collagen sequences reaffirm the affinity of Nesophontes and Solenodon as sister taxa within Solenodonota. This relationship helps lay the foundation for testing geographical isolation hypotheses across islands within the Greater Antilles, including movement from Cuba toward Hispaniola. Second, our results are consistent with Cuba having just two species of Nesophontes (N. micrus and N. major) that exhibit intrapopulation morphological variation. Finally, analysis of the recently described species from the Cayman Islands (N. hemicingulus) indicates that it is a closer relative to N. major rather than N. micrus as previously speculated. This proteomic sequencing improves our understanding of the origin, evolution, and distribution of this extinct mammal lineage, particularly with respect to the approximate timing of speciation. Such knowledge is vital for this biodiversity hotspot, where the magnitude of recent extinctions may obscure true estimates of species richness in the past.

Morphology and Affinities of Pantocarpon Fruits (cf. Apiales: Torricelliaceae) from the Maastrichtian Deccan Intertrappean Beds of Central India

Premise of research. Permineralized fruits of Pantocarpon Kapgate, Patil, Ilamkar & Ramteke have been reinvestigated to better understand this abundant component of the Deccan Maastrichtian–Paleocene flora of central India.Methodology. Peels and X-ray microcomputed tomography (μ-CT) were used to compare the morphology and anatomy of the silicified fruits with that of possible extant relatives.Pivotal results. We show, for the first time, the surface morphology of these fruits, which are encased within opaque chert, and clarify additional characters of morphology and anatomy. By varying the orientation of digital sectioning planes through the fruit using μ-CT data, we show that five different generic names (Pantocarpon and the junior synonyms Bicarpelarocarpon, Plectroniocarpon, Loganiocarpon, and Verbenaceocarpon) were previously applied to the same entity, each based on holotypes studied in different physical planes of section. Several distinctive characters, including tricarpellate syncarpous fruits, paired apical apertures, empty sterile locules, single-seeded fertile locules, and longitudinal germination valves, are shared with the extant eudicot family, Torricelliaceae (Apiales). The pair of endocarp apertures resembles that in Aralidium and Torricellia. There are some obvious differences, however, from fruits of the three living genera. In Torricellia, Melanophylla, and Aralidium, there are two sterile locules (lateral) and a single fertile one (median), whereas in Pantocarpon, there are two fertile locules (lateral) and a single sterile one (median).Conclusions. Recognition of Pantocarpon as a potential member of Torricelliaceae is interesting because it would be the most ancient record known for the family (next youngest being middle Eocene, ca. 47 Ma) and provides additional biogeographic information. The occurrence of this taxon in India at about 66 Ma, when the subcontinent was still isolated from other major landmasses, indicates that this region may have played a role in early evolution of the family, which is now disjunct between Madagascar, China, and Malesia.

PhytoBase: A global synthesis of open-ocean phytoplankton occurrences

Abstract. Marine phytoplankton are responsible for half of the global net primary production and perform multiple other ecological functions and services of the global ocean. These photosynthetic organisms comprise more than 4300 marine species, but their biogeographic patterns and the resulting species diversity are poorly known, mostly owing to severe data limitations. Here, we compile, synthesize, and harmonize marine phytoplankton occurrence records from the two largest biological occurrence archives (Ocean Biogeographic Information System, OBIS; and Global Biodiversity Information Facility, GBIF) and three independent recent data collections. We bring together over 1.36 million phytoplankton occurrence records (1.28 million at the level of species) for a total of 1704 species, spanning the principal groups of the diatoms, dinoflagellates, and haptophytes, as well as several other groups. This data compilation increases the amount of marine phytoplankton records available through the single largest contributing archive (OBIS) by 65 %. Data span all ocean basins, latitudes, and most seasons. Analyzing the oceanic inventory of sampled phytoplankton species richness at the broadest spatial scales possible using a resampling procedure, we find that richness tends to saturate at ∼93 % of all species in our database in the pantropics, at ∼64 % in temperate waters, and at ∼35 % in the cold Northern Hemisphere, while the Southern Hemisphere remains under-explored. We provide metadata on the cruise, research institution, depth, and date for each data record, and we include phytoplankton cell counts for 193 763 records. We strongly recommend consideration of spatiotemporal biases in sampling intensity and varying taxonomic sampling scopes between research cruises or institutions when analyzing the occurrence data spatially. Including such information into predictive tools, such as statistical species distribution models, may serve to project the diversity, niches, and distribution of species in the contemporary and future ocean, opening the door for quantitative macroecological analyses of phytoplankton. PhytoBase can be downloaded from PANGAEA: https://doi.org/10.1594/PANGAEA.904397 (Righetti et al., 2019a).

Cretaceous and Eocene fossils of the rare extant genus Synneuron Lundstrom (Diptera: Canthyloscledidae): evidence of a true Pangean clade.

The first two fossil species of the canthyloscelid genus Synneuron are described based on compression wings. Synneuron eomontana sp. nov. is described from the Middle Eocene Coal Creek Member of the Kishenehn Formation, in the USA, and Synneuron jelli sp. nov. is described from the Lower Cretaceous Koonwarra Fossil Bed of the Korumburra Group, in Australia. The wings are illustrated and compared to the extant species of the genus, to species of the three other recent genera of Canthyloscelidae and to an anisopodid. A phylogenetic analysis of the relationships between the species of Synneuron was performed. The Eocene fossil S.eomontana appears as sister of the pair of recent Holarctic species of the genus, while the Australian Cretaceous species S.jelli is sister of the clade with the species of Synneuron of the northern hemisphere. The sister group of Synneuron is the canthyloscelid clade (Hyperoscelis+Canthyloscelis), for which a middle Jurassic fossil is known. At the early Cretaceous, Gondwana was already separated from Laurasia and the disjunction between the species of Synneuron in Australia and the northern hemisphere clade of the genus suggest a true pangeic origin for the genus. The biology of the canthyloscelid larvae is shaped by its trophic specialization-xylosaprophagous. This suggests that the transition from the Pangean Jurassic gymnosperm-dominated forests to the late Cretaceous angiosperm-dominated forests may be related to the low recent diversity of Synneuron or of the canthyloscelids in the world-and maybe to the extinction of the genus in the southern hemisphere. This major turnover of the vegetation type along the Cretaceous may be also somehow related to the complete extinction of other groups of flies strictly associated with gymnosperms, as may be the case of the lower brachyceran family Zhangsolvidae. This speculation needs additional corroboration from other groups, that will become available with the combination of systematics, paleontology and biogeographical information of different early Cretaceous clades.

Developing Standards for Improved Data Quality and for Selecting Fit for Use Biodiversity Data

The quality of biodiversity data publicly accessible via aggregators such as GBIF (Global Biodiversity Information Facility), the ALA (Atlas of Living Australia), iDigBio (Integrated Digitized Biocollections), and OBIS (Ocean Biogeographic Information System) is often questioned, especially by the research community. The Data Quality Interest Group, established by Biodiversity Information Standards (TDWG) and GBIF, has been engaged in four main activities: developing a framework for the assessment and management of data quality using a fitness for use approach; defining a core set of standardised tests and associated assertions based on Darwin Core terms; gathering and classifying user stories to form contextual-themed use cases, such as species distribution modelling, agrobiodiversity, and invasive species; and developing a standardised format for building and managing controlled vocabularies of values. Using the developed framework, data quality profiles have been built from use cases to represent user needs. Quality assertions can then be used to filter data suitable for a purpose. The assertions can also be used to provide feedback to data providers and custodians to assist in improving data quality at the source. A case study, using two different implementations of tests and assertions based around the Darwin Core "Event Date" terms, were also tested against GBIF data, to demonstrate that the tests are implementation agnostic, can be run on large aggregated datasets, and can make biodiversity data more fit for typical research uses.

The retrospective analysis of Antarctic tracking data project

The Retrospective Analysis of Antarctic Tracking Data (RAATD) is a Scientific Committee for Antarctic Research project led jointly by the Expert Groups on Birds and Marine Mammals and Antarctic Biodiversity Informatics, and endorsed by the Commission for the Conservation of Antarctic Marine Living Resources. RAATD consolidated tracking data for multiple species of Antarctic meso- and top-predators to identify Areas of Ecological Significance. These datasets and accompanying syntheses provide a greater understanding of fundamental ecosystem processes in the Southern Ocean, support modelling of predator distributions under future climate scenarios and create inputs that can be incorporated into decision making processes by management authorities. In this data paper, we present the compiled tracking data from research groups that have worked in the Antarctic since the 1990s. The data are publicly available through biodiversity.aq and the Ocean Biogeographic Information System. The archive includes tracking data from over 70 contributors across 12 national Antarctic programs, and includes data from 17 predator species, 4060 individual animals, and over 2.9 million observed locations.

Potential distribution of the tiger shrimp Penaeus monodon (Decapoda: Penaeidae), an invasive species in the Atlantic Ocean

Introduction: Invasive species are considered the second cause of extinction of native species after habitat loss. The impacts of invasive species have serious economic implications since the presence of this type of species can result in a decrease in ecosystem services granted to humans. In marine systems, some human activities such as maritime transport and aquaculture have favored the dispersion of invasive species, especially those with commercial importance. This paper describes the potential distribution of the tiger shrimp, Penaeus monodon, an invasive species along the American Atlantic coast. Objective: To describe a potential distribution model of Penaeus monodon in the American Atlantic region and compare the environmental characteristics of this region with those of the Indo-Pacific original niche conditions. Methods: Using geographic and environmental data, we constructed and tested three models to determine the efficiency of MaxEnt v. 3.3 software in predicting new areas for the distribution of this invasive shrimp species. Geographic data were downloaded from such web sites as the Global Biodiversity Information Facility, the Ocean Biogeographic Information System, and the United States Geological Survey, as well from literature. Environmental data were downloaded from Bio-Oracle v2.0 data base. The three tested models were: 1) the first was created using only recordings of Penaeus monodon from the Indo-Pacific (its origin zone) and then projected to the Atlantic (native model); 2) the second was built using only recordings from the invaded area; the training and projection area of this model was the Atlantic (invasive model); 3) the third included recordings from both the Indo-Pacific and Atlantic regions, and the model was trained and projected jointly in both areas (complete model). We extracted the values of the three models for each tiger shrimp sightings in the invaded area; sightings with values ³ 0.5 were considered as valid prediction of occurrence of the species. Results: We found that the following variables explained 80 % of species distribution: phosphates from the ocean surface, coastal type, chlorophyll a, and maximum bottom temperature. In terms of the models’ ability to predict the occurrences reported in the Atlantic, results were as follows: Native model had a prediction index of 40 %; Invasive model was able to predict 81 % of recordings; and complete model predicted 92 % of total occurrences reported in the invaded area. Conclusions: Our findings suggest that based on the complete model, the countries where the tiger shrimp could establish itself are Mexico and Cuba. Continuous monitoring and conservation actions are relevant in the countries where this species is currently established, as well of those countries with potential for invasions.