Freshwater Fish Biodiversity Research Articles

Freshwater fish biodiversity restoration in floodplain rivers requires connectivity and habitat heterogeneity at multiple spatial scales

With a sixth mass extinction looming and freshwater biodiversity declining at unprecedented rates, evaluating ecological efficacy of river restoration efforts is critical in combatting global biodiversity loss. Here, we present a comprehensive study of the functioning for fishes of 46 river restoration projects in the river Rhine, one of the world's most heavily engineered lowland rivers. Floodplains with permanent, either one- or two-sided lateral connectivity to the main channel, favour total fish abundance, and are essential as nursery areas for riverine fishes. Habitat heterogeneity had a strong positive effect on species richness but was negatively related with fish abundances. However, the effects of environmental variables varied between ecological groups and spatial scales. Surprisingly, richness of critical rheophilic fishes declined with large-scale habitat heterogeneity (~1000 m), while it increased at small scales (~100 m), possibly because of the presence of unfavourable habitats for this ecological group at larger scales. Clearly, there is no one-size-fits-all design for river restoration projects. Whether a river section is free-flowing or impounded dictates the scope and efficacy of restoration projects and, within a river section, multiple complementary restoration projects might be key to mitigate freshwater fish biodiversity loss. An essential element for success is that these projects should retain permanent lateral connection to the main channel.

Dramatic decline of two freshwater killifishes, main anthropogenic drivers and appropriate conservation actions

Freshwater fish biodiversity loss in the Mediterranean Basin is regarded as among the highest globally, with long-term population data sets required to discern long-term population trends of threatened species, in order to design appropriate conservation interventions. In this study, we assessed the population trends of two threatened freshwater fishes, Valencia letourneuxi and Valencia robertae, employing the most recent and largest compiled database to date (16 populations over 14 years). We applied the innovative methodology of the Living Planet Index (LPI) to assess the average rate of change over time across a set of V. letourneuxi and V. robertae populations in Greece. The LPI application revealed a dramatic decline of both species, with V. letourneuxi declining by 97.7% and V. robertae by 91.0%. Beta regression showed that water pollution, eutrophication and alien Eastern mosquitofish Gambusia holbrooki’ presence were the three best fitting predictors of the decline of V. letourneuxi and V. robertae populations. Based on the above, we outline the conservation measures urgently required to revert the near collapse of the populations of the two species. Conservation actions include the strict protection of the their lowland spring habitats, habitat improvement through changes in water management and agricultural practices, mosquitofish invasion prevention and mosquitofish impact mitigation measures, as well as translocation actions and captive breeding. Lastly, the association patterns of the proposed conservation actions with anthropogenic pressures and their expected outcomes were analysed through an alluvial diagram, providing insights on the scale of pressures mitigated by conservation actions and on their conservation benefits.

Reconciling biodiversity conservation and flood risk reduction: The new strategy for freshwater protected areas

AbstractAimNatural disaster risk reduction (DRR) is becoming a more important function of protected area (PAs) for current and future global warming. However, biodiversity conservation and DRR have been handled separately and their interrelationship has not been explicitly addressed. This is mainly because, due of prevailing strategies and criteria for PA placement, a large proportion of PAs are currently located far from human‐occupied areas, and habitats in human‐occupied areas have been largely ignored as potential sites for conservation despite their high biodiversity. If intensely developed lowland areas with high flooding risk overlap with important sites for biodiversity conservation, it would be reasonable to try to harmonize biodiversity conservation and human development in human‐inhabited lowland areas. Here, we examined whether extant PAs can conserve macroinvertebrate and freshwater fish biodiversity and whether human‐inhabited lowland flood risk management sites might be suitable to designate as freshwater protected areas (FPAs).LocationAcross Japan.MethodsWe examined whether extant PAs can conserve macroinvertebrate and freshwater fish biodiversity and analysed the relationship between candidate sites for new FPAs and flood disaster risk and land use intensity at a national scale across Japan based on distribution data for 131 freshwater fish species and 1395 macroinvertebrate species.ResultsWe found that extant PAs overlapped with approximately 30% of conservation‐priority grid cells (1 km2) for both taxa. Particularly for red‐listed species, only one species of freshwater fish and three species of macroinvertebrate achieved the representation target within extant PAs. Moreover, more than 40% of candidate conservation‐priority grid cells were located in flood risk and human‐occupied areas for both taxa.Main conclusionsFloodplain conservation provides suitable habitat for many freshwater organisms and helps control floodwaters, so establishing new FPAs in areas with high flood risk could be a win‐win strategy for conserving freshwater biodiversity and enhancing ecosystem‐based DRR (eco‐DRR).

Biodiversity of Freshwater Fish in Kelekar Floodplain Ogan Ilir Regency in Indonesia

The purpose of this study is to investigate fish biodiversity in the Kelekar floodplain. The study is explorative, with the determination of observation stations and with purposive sampling methods. Fishes were captured approximately 1.509 individuals consisting of 17 families and 24 species. The Shannon-Weiner diversity index was 2.394; 2.691; and 2.183 for station 1, 2, and 3, respectively. The Evenness index was 0.764; 0.871; and 0.806 for station 1, 2, and 3, respectively, meanwhile the highest value of Simpson’s dominance index was 0.045. The biodiversity index of the three stations was in the medium category.

DNA barcoding identification of Greek freshwater fishes.

Biodiversity is a key factor for the functioning and efficiency of an ecosystem. Greece, though covering a relatively small surface area, hosts a great deal of species diversity. This is especially true for freshwater fishes. In recent years, the traditional methods of species identification have been supplemented by the use of molecular markers. The present study therefore aims to extensively produce DNA barcodes for Greek freshwater fish species and investigate thoroughly if the presently accepted species classification is in agreement with molecular data. A 624-bases long fragment of the COI gene was sequenced, from 406 freshwater fish specimens belonging to 24 genera and originating from 18 lake and river sites. These sequences were used along with 596 sequences from the same genera, recovered from BOLD, for the construction of phylogenetic trees and the estimation of genetic distances between individuals. In total, 1002 sequences belonging to 72 species were analyzed. The method was found to be effective for 55 of 72 studied species. 17 closely related species with low interspecific genetic distances were observed, for which further study is proposed. It should also be noted that, in four cases, cryptic diversity was observed, where groups originally identified as one species exhibited genetic distance great enough to be separated into discrete species. Region specific haplotypes were also detected within populations of 14 species, giving the possibility to identify even the geographic origin of a species. Our findings are discussed in the light of the rich history of the Balkan peninsula and provide a significant steppingstone for the further study of Greek and European freshwater fish biodiversity.

Exotic fish and decreasing habitats vis-à-vis conservation of freshwater fish biodiversity of Bangladesh

Multiple stressors including biological invasion have long been recognised in conservation of freshwater fish biodiversity. Works in this line have, however, been still scanty in Asia and South America – the continents known for rich biodiversity. In this study, the first of its type in Bangladesh, impacts of exotic fish and declining habitats on native fishes have been investigated. Regression and correlation analyses of 16 years production data of ponds, practically the only habitat where exotic fish are cultured commonly with indigenous ones, reveals that a maximum of 25% of the abundance decrease of native fish could be due to the effects of five commonly cultured exotic fish. Rest of the decline might largely be due to shrinkage, degradation, and destruction of habitats. Inland habitats other than ponds shrink, commonly, by about 80 % during the dry season, and most rivers are heavily polluted except for the brief mid rainy season. Decline in native fish populations may result in reduced genetic diversity. Another potential danger is the probable genetic introgression from the less fit hatchery-originated fish with the wild ones. The study concludes that the native freshwater fishes are endangered by declining habitats, exotic fishes, genetic consequences of hatchery supplementation

Assessing freshwater fish biodiversity of Kumbe River, Papua (Indonesia) through environmental DNA metabarcoding

Context The ability to accurately assess biodiversity is a critical first step towards effective conservation and management. However, assessment of biodiversity using conventional monitoring programs is often constrained by high cost and a lack of taxonomic expertise. Environmental DNA (eDNA) metabarcoding may be a useful tool to efficiently catalogue biodiversity in areas that cannot be easily assessed using other methods. Aims Here, we evaluated the potential of eDNA metabarcoding for assessing fish biodiversity and distribution in the Kumbe River, Papua Province, Indonesia. Methods We selected four sampling locations and collected seven eDNA samples from each location. We used eDNA metabarcoding of the Cytochrome-b gene to characterise the fish community. Key results A total of 23 species were detected, three of which comprised 92% of sequence reads detected: Melanotaenia goldiei (32%), Craterocephalus randi (31%), and the invasive tilapia Oreochromis niloticus (29%). Only five species that were previously detected using conventional methods were detected by metabarcoding: M. goldiei, Craterocephalus stercusmuscarum, O. niloticus, Neoarius graeffei, and Arius arius. We detected 18 species (70% native) that have never been recorded from the Kumbe River. Conclusions This work has demonstrated that fish biodiversity is substantially underestimated in the Kumbe River. Environmental DNA metabarcoding is a promising rapid, non-invasive and cost-effective method for assessing fish biodiversity in Papua. Implications The findings support future investment in eDNA metabarcoding to characterise the fish biodiversity in Papua. This will assist in allocating the limited resources for conservation and management to areas most at risk from anthropogenic impacts.

GENETIC CHARACTERIZATION OF DWARF SNAKEHEAD, Channa gachua (Hamilton, 1822), FROM TWO POPULATIONS BASED ON 16S rRNA GENE

Indonesia is one of the countries with high biodiversity of freshwater fishes. One freshwater fish with a wide distribution in Asia with high economic potency for ornamental fish is dwarf snakehead. However, research on genetic characterization of dwarf snakehead from Indonesia is very limited. Therefore, this research aimed to compare genetic characterization of the dwarf snakehead from rice field irrigation at Donomulyo Village (Malang, East Java) and from Keji River (Magelang, Central Java). This study used a PCR method with universal primers: 16Sar and 16Sbr. The data obtained in this study were then analyzed using DNASTAR, BLAST, Mesquite, MEGA, DnaSP, and NETWORK. The results revealed the genetic distance between dwarf snakehead from rice field irrigation at Donomulyo Village and from Keji River was 1.36%. The divergence of GC content, haplotype number, variables sites, haplotype diversity, and nucleotide diversity in both populations exist. The results of this study are expected to arrange 16S mitochondrial DNA Library of dwarf snakehead from Indonesia which is useful for a reference in the conservation and utilization and management of dwarf snakehead in their habitat.

Basal resources of river food webs largely affect the fatty acid composition of freshwater fish

1.Overfishing, altered flow regimes, loss of connectivity, pollution and other direct human disturbances have had a significant impact on freshwater fish biodiversity. While direct effects of these disturbances are well documented, some can also lead to changes in the nutritional composition at the base of freshwater food webs and may affect fish growth and reproduction. Thus far, little is known about how changes in the nutritional composition at the base of freshwater food webs are reflected in fish production and fatty acid composition.2.We conducted a field study in subalpine rivers in Austria to examine how variations in the food quality of basal food sources affect the biochemical composition of freshwater fish. Basal food sources (terrestrial leaves and periphyton), the abundant fish taxa brown trout (Salmo trutta) and European bullhead (Cottus gobio) and their macroinvertebrate prey were collected and their stable carbon isotopes (δ13C) and fatty acid (FA) compositions were measured.3.Our results show that periphyton was the major source of dietary carbon for fish and most invertebrates, except shredders, and a high-quality food for all consumers that provides long-chain polyunsaturated FA (LC-PUFA). In contrast, submerged leaves contained very low content of LC-PUFA and were low-quality food for consumers.4.Changes in periphyton FA across these river ecosystems were tracked in macroinvertebrate FA profiles and in the FA composition of muscle tissues in both fish species. In contrast, the FA composition of fish brain remained unaltered across the study streams.5.The docosahexaenoic acid (DHA, 22:6ω3) content in muscle tissues of S. trutta remained stable and did not correspond to changes of periphyton FA, indicating strong regulation of DHA in this species which is independent of aquatic food sources. In contrast, muscle DHA and eicosapentaenoic acid (EPA, 20:5ω3) content of C. gobio significantly declined when periphyton quality decreased, reflecting the strong impact of the nutritional quality of periphyton on the FA composition of this bottom-dwelling fish.6.Reduced nutritional quality of periphyton led to reduced LC-PUFA in muscle tissues of bottom-dwelling bullhead and even piscivorous brown trout, suggesting that changes of FA composition at the base of river food webs cannot be compensated by intermediate consumers, such as benthic invertebrates, that also convey dietary FA to fishes. This study highlights how subtle human disturbance to streams can affect freshwater fish species through changes to the nutritional quality of their basal food sources.

Fishermen\u2019s perceptions and experiences toward the impact of climate change and anthropogenic activities on freshwater fish biodiversity in C\xf4te d\u2019Ivoire

Africa’s freshwater ecosystems are impacted by many threats due to climate change and several anthropogenic activities. In Côte d’Ivoire, the economy relies mostly on agriculture, which covers around 64% of the land surface. The study aimed to investigate Côte d’Ivoire fishermen’s perception of climate change, its drivers and other anthropogenic activities impacting freshwater fish biodiversity. The fish species locally threatened in the Ivorian freshwater ecosystems were also investigated. Face to face interviews and a structured questionnaire were used. The data obtained were analysed using descriptive statistics such as frequency, percentage, means, and standard deviation, minimum and maximum. The multinomial logit regression was also applied to test factors that influence fishermen’s awareness and perception of climate change and their perception of change in fish abundance. The results show that around 72.7% of fishermen were aware of climate change. Decreases of precipitation (87.9%) and increases of temperature (76.1%) were observed by fishermen. Also, a significant decrease in fish quantity was observed by respondents. Climate change and anthropogenic activities such as gold mining, water withdrawal, use of small-mesh fishing nets, overfishing, industrial waste pollution, pesticides use for agricultural purposes along watersheds, obnoxious fishing practices and population growth, were highlighted as the main reasons for this decline. Species such as Lates niloticus, Heterotis niloticus, Parachanna obscura, Malapterurus electricus, Sarotherodon galilaeus, Tilapia zillii, Polpyterus endlicheri and Labeo coubie were listed by fishermen as locally threatened within Ivorian freshwater ecosystems. Actions and policies are needed to be taken by local authorities to ensure the sustainability of fisheries resources. The information obtained from this study constitutes a prerequisite for developing and implementing studies or policies aimed at mitigating and combating the negative effect of climate change and anthropogenic activities on the Ivorian freshwater ecosystem.

FISHMORPH: A global database on morphological traits of freshwater fishes

AbstractMotivationGlobal freshwater fish biodiversity and the responses of fishes to global changes have been explored intensively using taxonomic data, whereas functional aspects remain understudied owing to the lack of knowledge for most species. To fill this gap, we compiled morphological traits related to locomotion and feeding for the world freshwater fish fauna based on pictures and scientific drawings available from the literature.Main types of variables containedThe database includes 10 morphological traits measured on 8,342 freshwater fish species, covering 48.69% of the world freshwater fish fauna.Spatial location and grainGlobal.Major taxa and level of measurementThe database considers ray‐finned fishes (class Actinopterygii). Measurements were made at the species level.Software format.csv.Main conclusionThe FISHMORPH database provides the most comprehensive database on fish morphological traits to date. It represents an essential source of information for ecologists and environmental managers seeking to consider morphological patterns of fish faunas throughout the globe, and for those interested in current and future impacts of human activities on the morphological structure of fish assemblages. Given the high threat status of freshwater environments and the biodiversity they host, we believe this database will be of great interest for future studies on freshwater ecology research and conservation.

Life history of the endangered Japanese striped loach, Cobitis kaibarai (Cypriniformes: Cobitidae), with special reference to its reproductive ecology and the influence of creek reshapings on its population density.

In recent years, the biodiversity of freshwater fishes has been markedly decreasing worldwide because of anthropogenic activities. The Japanese striped loach, Cobitis kaibarai (Cypriniformes: Cobitidae), is a primary freshwater fish endemic to northern Kyushu, Japan. This species is designated as endangered IB class in the Red List by the Japan Ministry of the Environment. Its population is decreasing, possibly because of habitat loss and degradation. To conserve C. kaibarai populations, information on its basic ecology is necessary; nonetheless, its detailed life history and reproductive ecology have yet to be clarified. In this study, the authors conducted monthly capture-mark-recapture surveys and periodical observations to investigate the life history, spawning sites and season of C. kaibarai. They also evaluated the influence of creek reshaping (concrete revetment) on the C. kaibarai population in Saga Plain, northern Kyushu. Between 2015 and 2018, more individuals were captured during winter than summer. The average body width of females peaked in early June and small immatures were confirmed from July. Some individuals were captured across 15 or more months after their initial marking. In the survey of reproductive sites, eggs and larvae of C. kaibarai were found in shallow areas in mid-June; these were temporarily submerged following the increase in water level from early June. Therefore, C. kaibarai spawns in shallow areas during this season. Based on the capture-mark-recapture surveys, the estimated population density of C. kaibarai significantly decreased in a census site that had undergone creek reshaping, which contrasted with the results in a control site, where no significant difference was detected. The standard length of C. kaibarai increased following creek reshaping, suggesting that the proportion of C. kaibarai postponing spawning had increased, possibly because of degradation of spawning environments. The results of this study provide important ecological knowledge for the conservation of C. kaibarai and emphasize the importance of shallow waters for floodplain spawners.

Habitat Preferences of Italian Freshwater Fish: A Systematic Review of Data Availability for Applications of the MesoHABSIM Model

The MesoHABitat SImulation Model (MesoHABSIM) is the preferred method to calculate spatio-temporal variation in the fish habitat availability in Italian rivers. With the aim of improving the applicability of the MesoHABSIM approach in the Italian territory, we carried out a systematic review of physical habitat preferences for 31 freshwater fish species and three freshwater lampreys, representing 75% of the total indigenous freshwater fish community of Italy. Information related to suitable ranges of depth, flow velocity, biotic/abiotic substrates, covers/shelters was collected and summarized for two critical life stages (adult and juvenile) and two bioperiods (rearing/growth and spawning). Overall, 250 publications were reviewed, classified as 206 peer-reviewed papers, 20 books, 7 PhD thesis, and 17 grey literature sources. Our analysis revealed substantial deficits of information about habitat requirements for more than 30% of Italian freshwater fish species. This information is particularly scarce for the most threatened endemic species, especially for their most critical bioperiod (i.e., spawning). With the aim of preserving freshwater fish biodiversity as required in the EU Biodiversity Strategy for 2030 (European Commission, 2020), accurate information on physical habitat requirements for spawning is crucial. As an example application of MesoHABSIM, the collected habitat preference information was used to define and apply mesohabitat suitability criteria for one fish species (Telestes muticellus) in a regulated river reach of Argentina Creek (Province of Imperia, Italy). This analysis demonstrates the potential for applying information from the current review to other fish species.

Fish taxonomic, functional, and phylogenetic diversity and their vulnerabilities in the largest river in southeastern China.

Freshwater biodiversity is currently under multiple threats. Conservation of freshwater fish biodiversity needs to be prioritized because natural conservation resources are always limited.Samples were collected at 24 sites in the Min River, the largest basin in southeastern China. Taxonomic, functional, and phylogenetic diversity were analyzed. Biodiversity vulnerability was measured by removing one species each time out of the community with replacement.Results suggested that hotspots for taxonomic and phylogenetic diversity were located at two impounded sites, while for functional diversity were those sites with no upstream dams. Little congruence was observed between taxonomic, functional, and phylogenetic diversity. Fragmentation of river network connectivity caused by dams was a significant factor affecting the biodiversity patterns. Beta turnover was the driving component for beta diversity, indicating that biodiversity dissimilarity along the river was mostly explained by environmental sorting. Fifteen out of 16 species that contributed the most to different facets of biodiversity were mostly endemic, either they had distinctive functional traits or they were the most prevalent species. Sites with the highest diversity vulnerability were characterized by these distinctive species. Functional diversity was more vulnerable to species loss comparing with the other two biodiversity facets.Prioritizing those biodiversity hotspots, sites with extreme functional vulnerability, and those distinctive endemic species which contributed the most to biodiversity vulnerability is suggested in the Min River. The study found evidence that congruence among different facets of biodiversity is hard to achieve, and functional diversity is the most vulnerable in a freshwater system fragmented by intensive dam constructions. This work will help to develop systematic conservation planning from the perspective of different biodiversity facets.

Alpine freshwater fish biodiversity assessment: an intercalibration test for metabarcoding method set up

Environmental DNA (eDNA) based methods (Fig. 1) are proving to be a promising tool for freshwater fish biodiversity assessment in Europe within the Water Framework Directive (WFD, 2000/60/EC) especially for large rivers and lakes where current fish monitoring techniques have known shortcomings. Freshwater fish are actively involved in aquatic ecosystems functioning and diversity, contributing to the health, well-being and economy in every geographic realm. Unfortunately, many freshwater fish are experiencing critical population decline with risk of local or global extinction because of intense anthropogenic pressure. Within the EU project Eco-AlpsWater, advanced high throughput sequencing (HTS) techniques are used to improve the traditional WFD monitoring approaches by using environmental DNA (eDNA) collected in Alpine waterbodies. To evaluate the performance of the metabarcoding approach specifically designed to measure freshwater fish biodiversity in Alpine lakes and rivers, an intercalibration test was performed. This exercise forecasted the use of mock samples containing either tissue-extracted DNA of different target species or water collected from aquaculture tanks to mimic real environmental water sampling and processing. Moreover, three water samples collected in Lake Bourget (France) were used to compare the efficiency of taxonomic assignments in natural and mock community samples. Our results highlighted a good efficiency of the molecular laboratory protocols for HTS and a good amplification success of the selected primers, providing essential information concerning the taxonomic resolution of the 12S mitochondrial marker. As further confirmation, different concentration of species DNA in the mock samples were well represented by the relative read abundance. This preliminary test confirmed the applicability of eDNA metabarcoding analyses for the biomonitoring of freshwater fish inhabiting Alpine and perialpine lakes and rivers.

Streams fish from Upper Araguaia and Middle Rio da Mortes basin, Brazil: generating subsidies for preservation and conservation of this critical natural resource

Abstract: The Araguaia River basin has the highest fish biodiversity within the Cerrado biome (Brazilian savannah), with many endemic and threatened species by human activities. Despite growing efforts to catalog Neotropical freshwater fish biodiversity, many regions are still undersampled. Our objective is to complement the information about stream fish in two hydrographic basins in the Cerrado. We sampled 72 streams with 50 m stretch in the Upper Araguaia (n = 32) and Middle Rio das Mortes (n = 40) basins. We collected 14,887 individuals distributed in 137 species, 81 genera, 30 families, and six orders. Characidae, Loricariidae, and Cichlidae were the families richer in species. We found a high diversity of rare fish species in the streams sampled, ca. 71.5% of the species had at least five individuals collected, and 18 species had only one collected specimen. The most frequent species were Astyanax cf. goyacensis, Knodus cf. breviceps, and Characidium cf. zebra. Both basins shared around 43% of the species. We caught 76 species in Upper Araguaia and 120 species in Middle Rio das Mortes. Seventeen exclusive fish species occurred in Upper Araguaia, whereas 61 were found in the Middle Rio das Mortes basin. Our analysis showed lower diversity of fish in Upper Araguaia than in the Middle Rio das Mortes basin. Considering the exclusive fish species of both basins, the human threats in those regions, and the few existent protected areas, we need a better look at the aquatic biodiversity conservation of this ecosystem.

A global perspective on the influence of the COVID-19 pandemic on freshwater fish biodiversity

The COVID-19 global pandemic and resulting effects on the economy and society (e.g., sheltering-in-place, alterations in transportation, changes in consumer behaviour, loss of employment) have yielded some benefits and risks to biodiversity. Here, we considered the ways the COVID-19 pandemic has influenced (or may influence) freshwater fish biodiversity (e.g., richness, abundance). In many cases, we could only consider potential impacts using documented examples (often from the media) of likely changes, because anecdotal observations are still emerging and data-driven studies are yet to be completed or even undertaken. We evaluated the potential for the pandemic to either mitigate or amplify widely acknowledged, pre-existing threats to freshwater fish biodiversity (i.e., invasive species, pollution, fragmentation, flow alteration, habitat loss and alteration, climate change, exploitation). Indeed, we identified examples spanning the extremes of positive and negative outcomes for almost all known threats. We also considered the pandemic's impact on freshwater fisheries demand, assessment, research, compliance monitoring, and management interventions (e.g., restoration), with disruptions being experienced in all domains. Importantly, we provide a forward-looking synthesis that considers the potential mechanisms and pathways by which the consequences of the pandemic may positively and negatively impact freshwater fishes over the longer term. We conclude with a candid assessment of the current management and policy responses and the extent to which they ensure freshwater fish populations and biodiversity are conserved for human and aquatic ecosystem benefits in perpetuity.

DNA barcoding to characterize biodiversity of freshwater fishes of Egypt.

The current study represents the first molecular characterization of freshwater fish species in Egypt from two major fish resources; the River Nile and Lake Nasser. A total of 160 DNA barcodes using a 655-bp-long fragment of the mitochondrial cytochrome oxidase subunit I (COI) gene were generated from 37 species belonging to 32 genera that represent 15 families from nine orders. The studied species were identified using different molecular-based identification approaches, in addition to the morphological identification, including neighbor-joining (NJ) trees, Barcode Index Number, and Automatic Barcode Gap Discovery (ABGD). The average genetic divergence based on the Kimura two-parameter model (K2P) within orders, families, genera, and species were 0.175, 0.067, 0.02, and 0.008, respectively. The minimum and maximum K2P distance-based genetic divergences were 0.0 and 0.154, respectively. Nucleotide diversity (π) varied among families and ranged between 0.0% for families Malapteruridae, Auchenoglanididae, Schilbeidae, Anguillidae, Centropomidae and Tetraodontidae and 17% for family Cyprinidae. The current study cautions against the lack of species coverage at public databases which limits the accurate identification of newly surveyed species and recommends that multiple methods are encouraged for accurate species identification. The findings of the current study also support that COI barcode enabled effective fish species identification in River Nile and Lake Nasser. Moreover, the results of the current study will establish a comprehensive DNA barcode library for freshwater fishes along the River Nile in Egypt. Egyptian freshwater fish DNA barcodes will contribute substantially to future efforts in monitoring, conservation, and management of fisheries in Egypt.

Fish Diversity, Endemism, Threats, and Conservation in the Jinsha River Basin (Upper Yangtze River), China

AbstractThe Jinsha River, which comprises the upper reaches of the Yangtze River, has among the highest freshwater fish biodiversity and endemism in China, but these characteristics have rarely been quantitatively evaluated at the basin scale. We used fish presence–absence data collected from the entire Jinsha River basin (JRB) from 1964 to 2017 to determine patterns in fish biodiversity. In total, 229 freshwater fish species from 9 orders, 26 families, and 110 genera were recorded. Of these species, 161 were endemic to China, with 94 species being endemic to the Yangtze River basin, and 39 species were threatened. Fish species richness was higher in the downstream river reaches and was higher in the main stem than in the tributaries. Overfishing, water pollution, and dam construction have been threatening fish diversity in theJRBfor several decades. Conservation strategies similar to those used in North America may be applicable to theJRBto help protect native fishes in this important river basin. Such strategies include (1) assessment of several tributaries as fish reserves; (2) regular adjustment of turbine operations during the fish spawning period; and (3) regulation of the many co‐occurring human stressors in theJRB.

The study on freshwater fish biodiversity of ukkadam (periyakulam) and valankulam lake from coimbatore district, tamil nadu, india

Wetlands of India preserve a rich variety of fish species. Globally wetlands as well as fauna and flora diversity are affected due to increase in anthropogenic activities. The present investigation deals with the fish bio-diversity of selected major wetlands Periyakulam famously called Ukkadam Lake, Singanallur Lake andSulur Lake of Coimbatore district fed by Noyyal River. Due to improper management of these lentic wetlands water bodies around Coimbatore district by using certain manures, insecticides in agricultural practices in and around these selected areas has polluted the land and these fresh waters creating hazards for majorvertebrate fishes which are rich source of food and nutrition, an important and delicious food of man. The results of the present investigation reveals the occurrence of 19 fish species belonging to 5 order, 8 families 18 species recorded from the Ukkadam wetland followed by Singanallur wetland with 5 different orders 7 different families and 14 species. Ichthyofaunal diversity of Sulur wetland compressed of 6 families with 14 species. The order Cypriniformes was found dominant followed by Perciformes, Ophicephalidae, Siluriformes and Cyprinodontiformes species in Ukkadam and Singanallur wetland lakes while in Sulur it was recorded as Cyprinidae > Cichlida > Ophiocephalidae > Anabantidae > Bagridae > Heteropneustidae. This study on the freshwater fish species diversity of these wetlands would help in explore the fish fauna status and estimate the factors that may need rectification for fish conservation and management.