Biochemical Relationships Research Articles

Myelopoiesis Requires a Noncatalytic, Ras-Independent Function of SHP-2.

Activating mutations in PTPN11, which encodes the tyrosine phosphatase SHP-2, comprise the most frequent genetic lesion in juvenile myelomonocytic leukemia (JMML). Other etiologies of JMML include activating mutations in NRAS or KRAS2 and inactivation of the tumor suppressor NF1. These and other observations imply that PTPN11 functions in a common genetic pathway with RAS and NF1. Ras proteins are signal switch molecules that respond to extracellular stimuli by cycling between inactive GDP-bound and active GTP-bound conformations. Oncogenic alleles encode proteins that preferentially accumulate in the GTP-bound form. While NF1 encodes a GTPase activating protein for Ras that directly modulates Ras-GTP levels, the biochemical relationship between SHP-2 phosphatase activity and Ras signaling remains unclear. Most mammalian systems place SHP-2 upstream of Ras activation, but the mechanism is not known. Studies of Ptpn11 mutant embryos and of chimeric mice have shown that SHP-2 plays an essential role in hematopoietic development. We tested the hypothesis that the essential function of SHP-2 in primary hematopoietic cells is to activate Ras. To do this, we determined if Ras activation by expression of an oncogenic Kras2 allele could eliminate the requirement for SHP-2. We used conditional alleles of Kras2 (LSL-KrasG12D) and Ptpn11 (Ptpn11flox/flox) coupled with the inducible Mx1-Cre transgene. Juvenile mice were injected with polyI:polyC, resulting in expression of K-RasG12D and inactivation of Ptpn11. Although these mice uniformly developed fatal MPD similar to what we previously reported in Mx1-Cre, LSL-KrasG12D mice (Braun et al., PNAS 101(2):597–602), myeloid progenitors invariably retained an intact Ptpn11 allele despite uniform activation of the conditional KrasG12D allele. These data suggested that there was strong selective pressure to retain a functional Ptpn11 allele despite oncogenic K-Ras expression. To test this hypothesis directly, we enumerated myeloid progenitor colonies in methylcellulose medium immediately after inactivating Ptpn11 and activating KrasG12D via retroviral transduction. This confirmed a strong dependence on SHP-2 for formation of myeloid colonies either in the presence or absence of KrasG12D. Infecting Ptpn11flox/flox, LSL-KrasG12D cells with a Ptpn11-IRES-Cre virus fully restored the aberrant growth phenotype of KrasG12D mutant cells. Remarkably, alleles encoding phosphatase-deficient SHP-2 proteins also rescued CFU-GM growth. These data indicate that SHP-2 is required for growth of both normal and neoplastic myeloid progenitors in vivo and in vitro. Our data support a model in which SHP-2 has essential hematopoietic functions that are independent of Ras activation and do not require SHP-2 phosphatase activity. The presence of protein-protein interaction domains in SHP-2 suggests that it may have a noncatalytic adaptor function. Because transformation by leukemogenic Ptpn11 alleles requires catalytic activity, our data imply that inhibition of SHP-2 catalysis will selectively target neoplastic hematopoietic progenitors.

Precision mapping of the metabolome

The global study of the structure and dynamics of metabolic networks has been hindered by a lack of techniques that identify metabolites and their biochemical relationship in complex mixtures. The recent application of Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) to metabolomic analysis suggests a way to tackle the problem. A lower-cost alternative to high-field FTICR-MS, the Orbitrap mass analyzer, promises accelerated activity in this area. Here, we show how the ultra-high mass accuracy and resolution provided by this new generation of mass spectrometers can help to identify metabolites and connect them into metabolic networks. Data from perturbation studies and isotope-tracking experiments can complement this information to create metabolic maps de novo and chart unexplored areas of metabolism.

An Unexpected Connection: Potassium Limitation and Ammonium Toxicity in Yeast

Give the yeast Saccharomyces cerevisiae the right growing conditions and it multiplies like crazy—as any bread maker or beer brewer can testify. But deprive it of sufficient potassium, and it’s lucky to survive. Why? Since S. cerevisiae is a model organism for eukaryotes, the answer to that question could provide valuable insights into cellular processes of many organisms, including humans. To learn how potassium limits growth in yeast, David C. Hess, David Botstein, and colleagues enlisted the assistance of DNA microarray analysis, a biochemical tool that allows scientists to identify which genes are active in a cell at any given time. What they found gave them a start: in S. cerevisiae cells grown in a potassium-limited medium, genes involved in a seemingly unrelated process—nitrogen metabolism—showed dramatically altered activity compared with unstressed cells, with genes repressed by products of nitrogen-compound breakdown becoming less active, and those whose products facilitate amino acid transport showing increased activity. At first, that made about as much sense as discovering that every time you open your refrigerator the stock market drops. What could possibly be the connection? The altered gene activity pattern suggested an attempt to deal with a toxic influx of nitrogen within the cell, but nitrogen toxicity has been thought to be limited to multicellular organisms, with one-celled types easily able to keep the nutrient in balance by excreting excess through cell membrane channels. Could limited potassium upset that ability? In search of an answer, the scientists looked at cells exposed to different ammonium and potassium levels. They found that in low-potassium but not high-potassium environments, cell numbers went down dramatically as ammonium concentration increased, suggesting that ammonium is indeed toxic to yeast when potassium is limited. A second test, in which they increased concentration of the nitrogen-rich amino acid asparagine rather than ammonium, confirmed that what they were seeing was not a general nitrogen effect, but one specific to ammonium. Further tests of other strains of S. cerevisiae confirmed that they were not dealing with a situation unique to a single quirky cell type. If what they were seeing was indeed an adverse reaction to ammonium, the researchers predicted they should also see some sort of metabolic fingerprint of the yeast’s efforts to detoxify its environment. And they did. In collaboration with the Rabinowitz lab at Princeton, they used liquid chromatography tandem mass spectrometry to test the biochemical contents of medium in which ammonium-stressed yeast cells were grown. There, the researchers found high levels of amino acids—apparently the yeast equivalent of the urea we mammals excrete in urine to remove toxic nitrogen from our system. Having confirmed the presence of ammonium toxicity, the researchers next turned their attention to the issue of the mysterious connection with potassium concentration. Because potassium and nitrogen have similar chemical properties, they hypothesized that ammonium ions leak into cells through potassium channels when those channels are not otherwise occupied ushering potassium across the cell membrane. To test this, they engineered strains of S. cerevisiae in which ammonium influx into the cells could be increased without stimulating innate ammonium concentration regulatory mechanisms. Even in high-potassium environments, cells engineered to let in lots of ammonium showed greater mortality than those engineered to let in little, supporting the hypothesis that excess influx of ammonium is the root of the problem. Furthermore, the researchers found that in engineered cells in which ammonium transport across the cell membrane was high, growth was indeed limited even though potassium was not, and the cells excreted high levels of amino acid, mimicking the potassium-limited state. The researchers concluded that S. cerevisiae does indeed experience ammonium toxicity under potassium-deprived conditions and that it uses a primitive detoxification system involving the production and excretion of amino acids in an attempt to deal with it. On a broader level, they demonstrated that systems biology techniques such as microarray analysis and mass spectrometry are valuable resources for discovering and exploring biochemical relationships and pathways that might otherwise remain masked in the normal workings of healthy cells. They hope in further studies to use these and other emerging tools to learn whether similar ammonium toxicity is also found in bacteria and to elucidate the mechanism behind S. cerevisiae’s amino acid–based detoxification system. For more on ammonium toxicity, see the related Primer (DOI: 10.1371/journal.pbio.0040388).

Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4

The genome of bacteriophage T4 encodes three polynucleotide ligases, which seal the backbone of nucleic acids during infection of host bacteria. The T4Dnl (T4 DNA ligase) and two RNA ligases [T4Rnl1 (T4 RNA ligase 1) and T4Rnl2] join a diverse array of substrates, including nicks that are present in double-stranded nucleic acids, albeit with different efficiencies. To unravel the biochemical and functional relationship between these proteins, a systematic analysis of their substrate specificity was performed using recombinant proteins. The ability of each protein to ligate 20 bp double-stranded oligonucleotides containing a single-strand break was determined. Between 4 and 37 degrees C, all proteins ligated substrates containing various combinations of DNA and RNA. The RNA ligases ligated a more diverse set of substrates than T4Dnl and, generally, T4Rnl1 had 50-1000-fold lower activity than T4Rnl2. In assays using identical conditions, optimal ligation of all substrates was at pH 8 for T4Dnl and T4Rnl1 and pH 7 for T4Rnl2, demonstrating that the protein dictates the pH optimum for ligation. All proteins ligated a substrate containing DNA as the unbroken strand, with the nucleotides at the nick of the broken strand being RNA at the 3'-hydroxy group and DNA at the 5'-phosphate. Since this RNA-DNA hybrid was joined at a similar maximal rate by T4Dnl and T4Rnl2 at 37 degrees C, we consider the possibility that this could be an unexpected physiological substrate used during some pathways of 'DNA repair'.

Persistent biases in the amino acid composition of prokaryotic proteins

Correspondence analysis of 28 proteomes selected to span the entire realm of prokaryotes revealed universal biases in the proteins' amino acid distribution. Integral Inner Membrane Proteins always form an individual cluster, which can then be used to predict protein localisation in unknown proteomes, independently of the organism's biotope or kingdom. Orphan proteins are consistently rich in aromatic residues. Another bias is also ubiquitous: the amino acid composition is driven by the G + C content of the first codon position. An unexpected bias is driven, in many proteomes, by the AAN box of the genetic code, suggesting some functional biochemical relationship between asparagine and lysine. Less-significant biases are driven by the rare amino acids, cysteine and tryptophan. Some allow identification of species-specific functions or localisation such as surface or exported proteins. Errors in genome annotations are also revealed by correspondence analysis, making it useful for quality control and correction.

Structural and Functional Characterization of Herpes Simplex Virus 1 Immediate-Early Protein Infected-Cell Protein 22

Of the five HSV1 immediate-early proteins, infected-cell protein 22 (ICP22), the product of the Us1 gene, is a member whose function is less understood. In order to promote better understanding of the role of ICP22 in viral replication, mutation and fluorescence techniques were used to investigate the biochemical relationship between ICP22's structure and nuclear localization, and the CAT assay was used to analyze the relationship between ICP22's structure and its transcriptional repression. The results of these experiments implied (i) ICP22 is localized to small dense nuclear bodies and is paired with the SC-35 domain in the nucleus, (ii) ICP22 localization in a punctate state requires completion of the main sequence which includes the 1-320th amino acids, (iii) a conservative mutation in the nucleotidylylation site is important for its nuclear localization and transcriptional repression, and (4) despite possessing the same amino acid sequence as the ICP22 carboxyl-terminal, Us1.5 was distinct from ICP22 in location and function.

Follicular fluid levels of inhibin A, inhibin B, and activin A levels reflect changes in follicle size but are not independent markers of the oocyte’s ability to fertilize

To investigate the biochemical relationship between follicular/oocyte maturity and follicular inhibins and activin levels. Prospective study. Research laboratory in university hospital. Thirty-five women undertook IVF/ICSI program. Individual follicular fluid aspirations, oocyte isolation, follicular fluid storage. Inhibin A, inhibin B, and activin A concentrations, oocyte retrieval, and fertility outcome. Inhibin A, inhibin B, and activin A concentrations varied from 7.9 to 436 ng/mL, 9.7 to 786 ng/mL, and 1.7 to 267.9 ng/mL, respectively. There was no change of inhibin A concentrations, whereas inhibin B and activin A concentrations dropped dramatically as the follicles enlarged. Total follicular content of inhibin A and activin A increased, and inhibin B remained constant. Both inhibin A and inhibin B levels were significantly higher in those follicles from which an oocyte could be recovered, but they did not differ with respect to subsequent oocyte fertilization. Inhibin A is actively produced throughout follicular growth to retain a set concentration. In contrast, inhibin B appears not to be actively produced, and the concentration drops as follicles enlarge. Activin A concentrations also decrease, but there is some extra synthesis. Higher levels of inhibin A and B are associated with oocyte presence but not with fertilization rates.

Biochemical relationship of phosphoenolpyruvate carboxylases (PEPCs) from thermophilic archaea

An archaeal phosphoenolpyruvate carboxylase (PEPC) was purified from an acidophilic extreme thermophile, Sulfolobus acidocaldarius. The native enzyme was a homotetramer of 260±20 kDa molecular mass composed of 60±5 kDa subunits. The enzyme appeared to have a temperature optimum of 90°C and a pH optimum of 8.0. The activity of S. acidocaldarius phosphoenolpyruvate carboxylase was inhibited by l-aspartate and l-malate, but not enhanced by any metabolites. In comparison to the enzymatic and molecular properties of all other phosphoenolpyruvate carboxylases including another archaeal entity from the hyperthermophilic methanogen Methanothermus sociabilis, the archaeal phosphoenolpyruvate carboxylases were quite different from bacterial and eucaryal counterparts, and their small size and the lack of positively allosteric regulation were likely to be peculiar to the enzyme of the domain Archaea.

Molecular modeling and characterization of Vibrio cholerae transcription regulator HlyU

BackgroundThe SmtB/ArsR family of prokaryotic metal-regulatory transcriptional repressors represses the expression of operons linked to stress-inducing concentrations of heavy metal ions, while derepression results from direct binding of metal ions by these 'metal-sensor' proteins. The HlyU protein from Vibrio cholerae is the positive regulator of haemolysin gene, it also plays important role in the regulation of expression of the virulence genes. Despite the understanding of biochemical properties, its structure and relationship to other protein families remain unknown.ResultsWe find that HlyU exhibits structural features common to the SmtB/ArsR family of transcriptional repressors. Analysis of the modeled structure of HlyU reveals that it does not have the key metal-sensing residues which are unique to the SmtB/ArsR family of repressors, yet the tertiary structure is very similar to the family members. HlyU is the only member that has a positive control on transcription, while all the other members in the family are repressors. An evolutionary analysis with other SmtB/ArsR family members suggests that during evolution HlyU probably occurred by gene duplication and mutational events that led to the emergence of this protein from ancestral transcriptional repressor by the loss of the metal-binding sites.ConclusionThe study indicates that the same protein family can contain both the positive regulator of transcription and repressors – the exact function being controlled by the absence or the presence of metal-binding sites.

Selenium uptake, translocation, assimilation and metabolic fate in plants

The chemical and physical resemblance between selenium (Se) and sulfur (S) establishes that both these elements share common metabolic pathways in plants. The presence of isologous Se and S compounds indicates that these elements compete in biochemical processes that affect uptake, translocation and assimilation throughout plant development. Yet, minor but crucial differences in reactivity and other metabolic interactions infer that some biochemical processes involving Se may be excluded from those relating to S. This review examines the current understanding of physiological and biochemical relationships between S and Se metabolism by highlighting their similarities and differences in relation to uptake, transport and assimilation pathways as observed in Se hyperaccumulator and non-accumulator plant species. The exploitation of genetic resources used in bioengineering strategies of plants is illuminating the function of sulfate transporters and key enzymes of the S assimilatory pathway in relation to Se accumulation and final metabolic fate. These strategies are providing the basic framework by which to resolve questions relating to the essentiality of Se in plants and the mechanisms utilized by Se hyperaccumulators to circumvent toxicity. In addition, such approaches may assist in the future application of genetically engineered Se accumulating plants for environmental renewal and human health objectives.

Using genomic and lipidomic strategies to investigate sphingolipid function in the yeast heat-stress response

In addition to their crucial role in membrane structure in Saccharomyces cerevisiae, sphingolipids serve vital roles in various aspects of yeast biology including endocytosis, intracellular protein transport and stress responses. Although previous studies have unequivocally demonstrated the sphingolipid requirements for these processes, few studies have contributed mechanistic information. We have used a systems approach including microarray, lipidomics and metabolic modelling to better understand (i) biochemical relationships between various branches of sphingolipid metabolism and pathways and contributing pathways such as fatty acid metabolism and phospholipid synthesis, (ii) the changes in cellular sphingolipid composition under various conditions and (iii) the effects of these changes on the transcriptional profiles and subsequently, cell phenotypes. Thus far, these approaches have indicated roles for sphingolipids in major transcriptional changes in response to heat stress, carbon source utilization, sporulation, cell wall integrity and other basic cellular functions. Although the yeast genome is fully sequenced, nearly 50% of all transcribed open reading frames remain uncharacterized with regard to cellular function; therefore, a major advantage of this approach is the ability to identify both biochemical and biological roles for enzymes and their products within broad cellular contexts.

Using genomic and lipidomic strategies to investigate sphingolipid function in the yeast heat-stress response

In addition to their crucial role in membrane structure in Saccharomyces cerevisiae, sphingolipids serve vital roles in various aspects of yeast biology including endocytosis, intracellular protein transport and stress responses. Although previous studies have unequivocally demonstrated the sphingolipid requirements for these processes, few studies have contributed mechanistic information. We have used a systems approach including microarray, lipidomics and metabolic modelling to better understand (i) biochemical relationships between various branches of sphingolipid metabolism and pathways and contributing pathways such as fatty acid metabolism and phospholipid synthesis, (ii) the changes in cellular sphingolipid composition under various conditions and (iii) the effects of these changes on the transcriptional profiles and subsequently, cell phenotypes. Thus far, these approaches have indicated roles for sphingolipids in major transcriptional changes in response to heat stress, carbon source utilization, sporulation, cell wall integrity and other basic cellular functions. Although the yeast genome is fully sequenced, nearly 50% of all transcribed open reading frames remain uncharacterized with regard to cellular function; therefore, a major advantage of this approach is the ability to identify both biochemical and biological roles for enzymes and their products within broad cellular contexts.

The Phosphoinositide-3-phosphatase MTMR2 Associates with MTMR13, a Membrane-associated Pseudophosphatase Also Mutated in Type 4B Charcot-Marie-Tooth Disease

Charcot-Marie-Tooth disease type 4B (CMT4B) is a severe, demyelinating peripheral neuropathy characterized by distinctive, focally folded myelin sheaths. CMT4B is caused by recessively inherited mutations in either myotubularin-related 2 (MTMR2) or MTMR13 (also called SET-binding factor 2). MTMR2 encodes a member of the myotubularin family of phosphoinositide-3-phosphatases, which dephosphorylate phosphatidylinositol 3-phosphate (PI(3)P) and bisphosphate PI(3,5)P2. MTMR13 encodes a large, uncharacterized member of the myotubularin family. The MTMR13 phosphatase domain is catalytically inactive because the essential Cys and Arg residues are absent. Given the genetic association of both MTMR2 and MTMR13 with CMT4B, we investigated the biochemical relationship between these two proteins. We found that the endogenous MTMR2 and MTMR13 proteins are associated in human embryonic kidney 293 cells. MTMR2-MTMR13 association is mediated by coiled-coil sequences present in each protein. We also examined the cellular localization of MTMR2 and MTMR13 using fluorescence microscopy and subcellular fractionation. We found that (i) MTMR13 is a predominantly membrane-associated protein; (ii) MTMR2 and MTMR13 cofractionate in both a light membrane fraction and a cytosolic fraction; and (iii) MTMR13 membrane association is mediated by the segment of the protein which contains the pseudophosphatase domain. This work, which describes the first cellular or biochemical investigation of the MTMR13 pseudophosphatase protein, suggests that MTMR13 functions in association with MTMR2. Loss of MTMR13 function in CMT4B2 patients may lead to alterations in MTMR2 function and subsequent alterations in 3-phosphoinositide signaling. Such a mechanism would explain the strikingly similar phenotypes of patients with recessive mutations in either MTMR2 or MTMR13.

The Plant Stress Hypothesis and Variable Responses by Blue Grama Grass (Bouteloua gracilis) to Water, Mineral Nitrogen, and Insect Herbivory

Acting simultaneously or sequentially, plants encounter multiple stresses from combined abiotic and biotic factors that result in decreased growth and internal reallocation of resources. The plant stress hypothesis predicts that environmental stresses on plants decrease plant resistance to insect herbivory by altering biochemical source-sink relationships and foliar chemistry, leading to more palatable food. Such changes in the nutritional landscape for insects may facilitate insect population outbreaks during periods of moderate stress on host plants. We examined the plant stress hypothesis with field experiments in continental grassland (USA) using the C4 grass Bouteloua gracilis. Water, nitrogen fertilizer, and herbivory from the grass-feeding grasshopper Ageneotettix deorum were manipulated. Combined stresses from water and mineral-N in the soil decreased plant growth and altered foliar percent total N (TN) and percent total nonstructural carbohydrate (TNC) concentrations in an additive fashion. Grasshopper herbivory affected final biomass only in dry years; plants compensated for tissue loss when rainfall was abundant. Foliar TN and TNC concentrations were dynamic with respect to variable climatic conditions and treatment combinations, showing significant interactions. Grasshopper herbivory had its greatest impact on TN or TNC in dry years, interacting with other forms of stress. Herbivory as a single factor had strong effects on TNC in years with normal precipitation, but not in a dry year. Performance (developmental rate and survival) by the grasshoppers Phoetaliotes nebrascensis and A. deorum were not greatly affected by plant stress in a manner consistent with the plant stress hypothesis.

Aortic Organ Disease Epidemic, and Why Do Balloons Pop?

As children, we learned that a balloon blown up to its limit of elasticity would pop. For similar aortic ballooning, we hardly know more. Furthermore, in the 21st century, with a nascent epidemic of aortic-related deaths, there have been no consequential advances in preventing the loss of aortic elasticity or in describing the etiology or injury that causes aortic disease. Nor is there an explanation as to why, in some people the aorta “pops” and in others, the aorta dissects. See p 1098 In the United States between 1999 and 2001, at least 129 533 people died from diseases of the aorta and its branches, excluding carotid and coronary disease—an average of 43 199/year, according to the Centers for Disease Control and Prevention ICD-10 codes (Table). The upper limit could potentially exceed 46 817 per year. This number is greater than the ≈40 000 people who die annually from breast cancer, homicides, pancreatic cancer, colon cancer, prostate cancer, or motor vehicle accidents.1 Despite this, little research and even less funding have been allocated to aortic disease research, possibly because disease of a supposedly utilitarian pipe that conveys blood to a pantheon of organs engenders less interest or sympathy in comparison with, for example, cancer. Furthermore, the dismal prognosis of aortic disease, a marker of systemic problems despite successful surgery, has not roused much concern, with a 5-year average survival rate of only 60% in most patients.2 This figure does not differ much from that of stage IB lung cancer. Even the aortic disease–related deaths of media figures such as Albert Einstein, Lucille Ball, Conway Twitty, and John Ritter have fomented little interest. As Western populations age, this most common cause of deaths including sudden death will become an increasing factor in long-term survival. View this table: Deaths Related to Aortic Disease …

Biochemical Polymorphisms and Genetic Relationships in Rodents of the Genera Oryzomys and Oligoryzomys (Sigmodontinae) from Brazil

An electrophoretic analysis of 12 allozyme systems (14 loci, 40 alleles) was performed in the rodent genera Oryzomys and Oligoryzomys, in order to determine the levels of genetic variability within and among populations and species. One hundred and fifty-five individuals from 16 populations of Oryzomys russatus, Or. angouya, Oligoryzomys flavescens, and O1. nigripes species were trapped in nine Brazilian localities. Genetic divergence among populations, as well as the interpopulational gene diversity, was higher in Oryzomys than in Oligoryzomys. The dendrogram of the phenetic relationships among the 16 populations of these four species displays three clusters: the first one joins the O1. flavescens populations with those of O1. nigripes; the second groups the populations of Or. russatus, and the last assembles the populations of Or. angouya. The genetic parameters analyzed reveal that the species belonging to the genus Oryzomys are genetically more structured than those of Oligoryzomys, the latter presenting lower levels of intrademe genetic differentiation (G(ST)')

Endolymph chemistry and otolith growth in fish

Otoliths are composed of 99% CaCO 3 in the aragonite form which is deposited daily onto an organic matrix. The mineralisation process takes place in an acellular medium, the endolymph, which is secreted by the inner-ear epithelium. The present review is mostly devoted to ionic and organic endolymph components (concentration and spatial distribution) in relation to otolith growth, with a special interest to the ionic supply from plasma to endolymph and to the biochemical relationships between endolymph and otolith matrix. To cite this article: P. Payan et al., C. R. Palevol 3 (2004) .

The LKB1 tumor suppressor negatively regulates mTOR signaling

Germline mutations in LKB1, TSC2, or PTEN tumor suppressor genes result in hamartomatous syndromes with shared tumor biological features. The recent observations of LKB1-mediated activation of AMP-activated protein kinase (AMPK) and AMPK inhibition of mTOR through TSC2 prompted us to examine the biochemical and biological relationship between LKB1 and mTOR regulation. Here, we report that LKB1 is required for repression of mTOR under low ATP conditions in cultured cells in an AMPK- and TSC2-dependent manner, and that Lkb1 null MEFs and the hamartomatous gastrointestinal polyps from Lkb1 mutant mice show elevated signaling downstream of mTOR. These findings position aberrant mTOR activation at the nexus of these germline neoplastic conditions and suggest the use of mTOR inhibitors in the treatment of Peutz-Jeghers syndrome.

Safety of 5-hydroxy- l-tryptophan

5-Hydroxy- l-tryptophan (5-HTP) is the immediate precursor in the biosynthesis of 5-hydroxy-tryptamine (5-HT; serotonin) from the essential amino acid l-tryptophan ( l-Trp). The use of l-Trp as a dietary supplement was discontinued in 1989 due to an outbreak of eosinophilia–myalgia syndrome (EMS) that was traced to a contaminated synthetic l-Trp from a single manufacturer. 5-HTP has since become a popular dietary supplement in lieu of the removal of l-Trp from the market. Because of its chemical and biochemical relationship to l-Trp, 5-HTP has been under vigilance by consumers, industry, academia and government for its safety. However, no definitive cases of toxicity have emerged despite the worldwide usage of 5-HTP for last 20 years, with the possible exception of one unresolved case of a Canadian woman. Extensive analyses of several sources of 5-HTP have shown no toxic contaminants similar to those associated with l-Trp, nor the presence of any other significant impurities. A minor chromatographic peak (peak X) reported in some 5-HTP samples lacks credibility due to chromatographic artifacts and infinitesimal concentrations, and has raised undue speculations concerning its chemistry and toxicity.

Probable epitopes: Relationships between myelin basic protein antigenic determinants and viral and bacterial proteins.

Nature holds numerous viral and bacterial proteins with regions of similarity to myelin basic protein antigenic determinants. Bioinformatic technology, including sequence similarity searches, may allow for the detection of biochemical and biophysical relationships between these peptides. Understanding these relationships is essential to understanding immune-mediated disease and, consequently, may be used to elucidate the etiology of pathological demyelinating diseases such as multiple sclerosis. Studies of experimental autoimmune encephalomyelitis have been used to identify antigenic determinants. We have used these determinants to search available databases of viral and bacterial proteins. Our results indicate numerous viral and bacterial protein segments with probabilistic sequence similarity to myelin basic protein antigenic determinants.