Biogeochemical Cycles Research Articles

Complex hydrothermal vent microbial mat communities used to assess primer selection for targeted amplicon surveys from Kama‘ehuakanaloa Seamount

The microbiota of hydrothermal vents has been widely implicated in the dynamics of oceanic biogeochemical cycling. Lithotrophic organisms utilize reduced chemicals in the vent effluent for energy, which fuels carbon fixation, and their metabolic byproducts can then support higher trophic levels and high-biomass ecosystems. However, despite the important role these microorganisms play in our oceans, they are difficult to study. Most are resistant to culturing in a lab setting, so culture-independent methods are necessary to examine community composition. Targeted amplicon surveying has become the standard practice for assessing the structure and diversity of hydrothermal vent microbial communities. Here, the performance of primer pairs targeting the V3V4 and V4V5 variable regions of the SSU rRNA gene was assessed for use on environmental samples from microbial mats surrounding Kama‘ehuakanaloa Seamount, an iron-dominated hydrothermal vent system. Using the amplicon sequence variant (ASV) approach to taxonomic identification, the structure and diversity of microbial communities were elucidated, and both primer pairs generated robust data and comparable alpha diversity profiles. However, several distinct differences in community composition were identified between primer sets, including differential relative abundances of both bacterial and archaeal phyla. The primer choice was determined to be a significant driver of variation among the taxonomic profiles generated. Based on the higher quality of the raw sequences generated and on the breadth of abundant taxa found using the V4V5 primer set, it is determined as the most efficacious primer pair for whole-community surveys of microbial mats at Kama‘ehuakanaloa Seamount.

Diatom silicon isotope ratios in Quaternary research: Where do we stand?

Silicon stable isotope ratios (expressed as δ30Si) in biogenic silica have been widely used as a proxy for past and present biogeochemical cycling in both marine and lacustrine settings, in particular for nutrient utilization reconstructions. Yet an analysis of publication trends suggests a significant decline in the application of δ30Si to Quaternary science questions in the last five years. At the same time as δ30Si proxy applications have decreased, we are learning more about its complexities: an expanding body of work is highlighting biases, caveats or complications involved in the application of δ30Si-based approaches to the sediment record. These include the demonstration of species-specific silicon isotope fractionation factors (i.e. ‘vital effects’) or the potential for Fe or other trace metals to influence silicon isotope fractionation. Others have inferred the potential of biogenic silica dissolution to alter an initial δ30Si value, or questioned the preservation of the initial δ30Si through early diagenetic processes more generally. Another challenge receiving more attention is centered around deconvolving a δ30Si-value into a signal reflecting biological productivity and a signal reflecting changes in the δ30Si of dissolved silicon driven by whole-system and/or circulation changes. Finally, a number of studies focus on analytical difficulties, especially during sample preparation related to achieving and demonstrating a contaminant free biogenic silica. These challenges lead us to posit that the Quaternary science community is moving away from silicon isotope proxies because they are losing confidence in their reliability and usefulness. Here, focusing on the diatoms – the dominant biosilicifiers in both lakes and the ocean – we synthesize progress in understanding nuances and caveats of δ30Si-based proxies in order to answer whether the fall-off in δ30Si-based Quaternary research is warranted. We suggest that with some simple steps that can be readily implemented, and with the closing of key knowledge gaps, there is no reason to believe silicon isotopes do not have a promising future in the Quaternary sciences.

Effects of burning and nitrogen addition on foliar stoichiometry and nutrient resorption in a subtropical–temperate ecotonal forest

Fire disturbances and atmospheric nitrogen (N) deposition can significantly soil nutrient dynamics and plant nutrient uptake, thereby influencing on biogeochemical cycles within forest ecosystems. Despite these known effects, the combined impact of burning and N addition on leaf nutrient characteristics and the underlying mechanisms remains largely unexplored, particularly within forest ecosystems. This study presents a three-year field experiment designed to assess the responses of leaf N and phosphorus (P) concentrations, N:P ratios, and nutrient resorption in six dominant species (comprising two tree species and four understory species) to burning and N addition in a coniferous-broadleaved mixed forest located within a subtropical-warm temperate transition zone in Central China. The findings revealed that burning did not affect N concentrations in either green or senesced leaves, nor did it influence N or P resorption across any of the tree or shrub species. However, it did increase P concentrations in green leaves and reduce N:P ratios in shrub species. N addition elevated the N concentrations and N:P ratio in green and/or senesced leaves (with the exception of Quercus acutissima Carruth.), without affecting N or P resorption. These results suggest that shrubs enhanced P uptake due to increased soil P availability but maintain consistent internal P cycling (i.e., nutrient resorption) following low-severity fires. Additionally, most shrub species exhibited lower N:P ratios compared to tree species post-burning, indicating distinct nutrient requirements and fire responses based on life form. This study provides essential insights, demonstrating that burning mitigates P limitation on plant growth in subtropical–warm temperate ecotonal forests. Furthermore, the differential responses of leaf nutrient traits and associated stoichiometry across diverse life forms to environmental disturbances may influence plant diversity and community composition within these forests.

Microplastic contamination accelerates soil carbon loss through positive priming

The priming effect, i.e., the changes in soil organic matter (SOM) decomposition following fresh organic carbon (C) inputs is known to influence C storage in terrestrial ecosystems. Microplastics (particle size <5 mm) are ubiquitous in soils due to the increasing use and often inadequate end-of-life management of plastics. Conventional polyethylene and bio-degradable (PHBV) plastics contain large amounts of C within their molecular structure, which can be assimilated by microorganisms. However, the extent and direction of the potential priming effect induced by microplastics is unclear. As such, we added 14C-labeled glucose to investigate how background polyethylene and PHBV microplastics (1 %, w/w) affect SOM decomposition and its potential microbial mechanisms in a short-term. The cumulative CO2 emission in soil contaminated with PHBV was 42–53 % higher than under Polyethylene contaminated soil after 60-day incubation. Addition of glucose increased SOM decomposition and induced a positive priming effect, as a consequence, caused a negative net soil C balance (−59 to −132 μg C g−1 soil) regardless of microplastic types. K-strategists dominated in the PHBV-contaminated soils and induced 72 % higher positive priming effects as compared to Polyethylene-contaminated soils (160 vs. 92 μg C g−1 soil). This was attributed to the enhanced decomposition of recalcitrant SOM to acquire nitrogen. The stronger priming effect associated in PHBVs can be attributed to cooperative decomposition among fungi and bacteria, which metabolize more recalcitrant C in PHBV. Moreover, comparatively higher calorespirometric ratios, lower substrate use efficiency, and larger enzyme activity but shorter turnover time of enzymes indicated that soil contaminated with PHBV release more energy, and have a more efficient microbial catabolism and are more efficient in SOM decomposition and nutrient resource uptake. Overall, microplastics, (especially bio-degradable microplastics) can alter biogeochemical cycles with significant negative consequences for C sequestration via increasing SOM decomposition in agricultural soils and for regional and global C budgets.

Vanadium redox speciation in the acid-extractable phase of Krka River estuary surface sediment

This study investigated the redox speciation and mobility of V in the acid-extractable fraction of surface sediments from the Krka River estuary using an optimized IC-UV/Vis analytical method. The separation of V(IV) and V(V) redox species was done using anion-exchange based chromatographic method, while pseudo-total V concentrations were measured using HR ICP-MS analytical instrumentation. Extracted V concentrations from the sediment fraction (pH = 5, HCl) and determined pseudo-total V concentrations were used to calculate the Enrichment Factor (EF) and Risk Assessment Code (RAC), indicating potential anthropogenic influence and environmental risk. A simple PHREEQC model was developed to asses V speciation in the oxic bottom seawater layer simulating possible remobilization of the leached sediment phase. The results of the study show that minor fraction of V is present in the acid-extractable phase across the surface sediment of Krka River estuary. Higher V mobility is mostly observed at locations rich with clay minerals, terrigenous input, and carbonates. Anthropogenic influence was linked to higher enrichment but lower mobility, suggesting binding to less mobile sediment phases (reducible, organic and residual fractions). The predominance of reduced V(IV) species in the acid-extractable sediment fraction indicates a potentially low V toxicity risk in the sediments of Krka River estuary, even in cases of high potential remobilization of V. However, the model predicted complete oxidation of V(IV) to V(V) upon remobilization into the oxic bottom water layer. This highlights the complexity of V behavior in natural estuarine systems, where the toxicity risks of possible V remobilization still remain unclear. Results of this study demonstrate the need for the strengthening efforts in speciation of V in the mobile sediment phase to obtain a cohesive outlook on its potential toxicity and biogeochemical cycling.

Insights into prokaryotic communities and their potential functions in biogeochemical cycles in cold seep.

Deep-sea cold seeps are among the most productive ecosystems, sustaining unique fauna and microbial communities through the release of methane and other hydrocarbons. Our study revealed that the influence of seepage fluid on the prokaryotic community in the water column is surprisingly limited, which challenges conventional views regarding the impact of seepage fluids. In addition, we identified that different DOM compositions play a crucial role in shaping the prokaryotic community composition, providing new insights into the factors driving microbial diversity in cold seeps. Furthermore, the study highlighted Proteobacteria as key and multifaceted drivers of biogeochemical cycles in cold seeps, emphasizing their significant contribution to complex interactions and processes. These findings offer a fresh perspective on the dynamics of cold-seep environments and their microbial communities, advancing our understanding of the biogeochemical functions in deep-sea environments.

Tree species-mediated soil properties shape soil fauna community structure more strongly in the soil layer: Evidence from a common garden experiment

Soil fauna plays a crucial role in the soil biogeochemical cycles of forest ecosystems, with tree species composition regulating their diversity and functionality through alterations in habitat conditions and nutrient availability. However, identifying the impacts of tree species on soil faunal communities remains challenging due to the difficulty in distinguishing the effects of tree species-induced habitat changes from those of historical environmental conditions. Here, we conducted a field study in a common garden established in 2015, with consistent climate, soil, and land-use conditions to clarify the response of the soil faunal community to changes in tree species. After 5 years of plantation growth, we evaluated the differences in tree species identities and soil faunal community structures between the litter and soil layers in four closed-canopy broadleaf forests (Cinnamomum septentrionale, Cinnamomum camphora, Cinnamomum longepaniculatum and Toona sinensis). We found that the soil faunal communities differed significantly among the four broad-leaved tree species, with 18.7 % being dominated by Collembola and 67.2 % by Acari, with a relatively high proportion of microbivores (65.5 %). Compared with that of the other stands, the C. longepaniculatum stand had the most notable differences in taxa composition, while the T. sinensis stand exhibited the greatest soil biological quality, with a QBS value 1.25 times greater than that of other stands. The greatest total soil faunal abundance was observed in C. camphora, and this high abundance was due to a greater proportion of microbivores (75.4 %), whereas the detritivores, herbivores, and predators exhibited greater abundance in T. sinensis than in the other stands due to the high-quality litter input (low C/P and C/N ratios) and low tree biomass. The distribution of soil fauna across the habitat layers was significantly influenced by tree species changes, with the most pronounced differences occurring in the soil layer rather than in the litter layer. Finally, soil properties, rather than litter and plant conditions, were the primary factors explaining interspecific variations in total abundance and total diversity of the soil fauna and the QBS index, accounting for 61.6 %, 71.7 %, and 34.4 % of the variation, respectively. The results from the common garden experiment suggest that the change in the soil faunal community due to tree species identity was greater in the soil layer than in the litter layer, with the crucial determinant being tree-species-mediated soil properties. These insights enhance our understanding of the effect of tree species on soil faunal communities, which is essential for biodiversity conservation in artificial forests and for guiding tree species selection.

Terrestrial input and biological processes drive varying mineral/organic matrix-related mercury sequestration and deposition in the East Siberian Arctic Shelf

Thawing Arctic permafrost is releasing massive amounts of terrestrial mercury (Hg) into the Arctic shelf, which is expected to form a Hg sink in sediments. Here we analyzed the coupling roles of terrestrial input and biological processes in varying mineral/organic matrix-related Hg sequestration and deposition on the East Siberian Arctic shelf (ESAS), using Pearson and partial correlation analysis. Results show that the occurrence of Hg in the Laptev Sea under the Lena River-dominated input exhibits strong correlations with the organic carbon (OC) content and sediment specific surface area. This indicates that the prolonged riverine loading processes facilitate Hg sequestration by organic/mineral matrices and these land-derived mineral-OC-Hg complexes remain stable during cross-shelf transportation. By contrast, the comparative samples with coastal erosion-dominated Hg input in the western East Siberian Sea shows limited Hg complexation, primarily due to the absence of regulation by riverine processes and/or the high sedimentation rates. The correlations between Hg and OC source proxies (δ13C and lignin) indicate that these matrix-free Hg could be more readily sequestrated by the marine OC, which facilitates its deposition via the biological pump. While unexpectedly low Hg abundance in the Chukchi Sea may indicate that the effective biological scavenging of Hg sequestration could be constrained by insufficient terrestrial Hg input. Our findings of the matrix-related Hg sequestration by mineral and/or OC association in this study may shed light on the biogeochemical cycle of Hg in the Arctic aquatic regime, which could reduce the methylmercury formation in water column, and the methylation within sediments needs further exploration.

Coupled sulfur and nitrogen cycling at a catchment scale: insights from isotopic and molecular techniques

The biogeochemical cycles of nitrogen (N) and sulfur (S) play important roles in sustaining the Earth's ecosystem. However, their potential coupling process and underlying mechanisms in the nature remain unclear. Through joint applications of river water's isotopic compositions, isotope-pairing experiments, and molecular techniques, this study revealed the coupled N-S cycling processes at a catchment scale from both geochemical and biological perspectives. The river water's natural abundance isotopic compositions indicated that sulfide oxidation was an important source (67.0 ± 5.5 % in summer and 72.0 ± 5.5 % in winter) of riverine sulfate (SO42−). In addition, sulfide oxidation and NOx reduction (especially denitrification) were tightly coupled in summer but less significantly so in winter. However, the coupling of sulfide oxidation and dissimilatory nitrate reduction to ammonium (DNRA) could not be overlooked in winter. The 15N pairing experiments quantitatively showed that the high sulfide oxidation rates in summer (4.7 ± 2.3 mol/km2/h) were significantly associated with the denitrification. Metagenomics and qPCR analyses of the soils supported the isotopic interpretations, substantiating the metabolic potential and coexistence of bacterial denitrification, DNRA, and sulfide oxidation, which was more prevalent in summer. This study reveals comprehensive evidence that sulfide oxidation and NOx reduction are tightly coupled at the catchment scale, which provides a new perspective towards a better understanding of N-S cycling.

The ultra-high affinity transport proteins of ubiquitous marine bacteria

SAR11 bacteria are the most abundant microorganisms in the surface ocean1 and have global biogeochemical importance2–4. To thrive in their competitive oligotrophic environment, these bacteria rely heavily on solute-binding proteins that facilitate uptake of specific substrates via membrane transporters5,6. The functions and properties of these transport proteins are key factors in the assimilation of dissolved organic matter and biogeochemical cycling of nutrients in the ocean, but they have remained largely inaccessible to experimental investigation. Here we performed genome-wide experimental characterization of all solute-binding proteins in a prototypical SAR11 bacterium, revealing specific functions and general trends in their properties that contribute to the success of SAR11 bacteria in oligotrophic environments. We found that the solute-binding proteins of SAR11 bacteria have extremely high binding affinity (dissociation constant >20 pM) and high binding specificity, revealing molecular mechanisms of oligotrophic adaptation. Our functional data have uncovered new carbon sources for SAR11 bacteria and enable accurate biogeographical analysis of SAR11 substrate uptake capabilities throughout the ocean. This study provides a comprehensive view of the substrate uptake capabilities of ubiquitous marine bacteria, providing a necessary foundation for understanding their contribution to assimilation of dissolved organic matter in marine ecosystems.

Synergistic Mitochondrial Genotoxicity of Carbon Dots and Arsenate in Earthworms Eisenia fetida across Generations: The Critical Role of Binding.

The escalating utilization of carbon dots (CDs) in agriculture raises ecological concerns. However, their combined toxicity with arsenic remains poorly understood. Herein, we investigated the combined mitochondrial genotoxicity of CDs and arsenate at environmentally relevant concentrations across successive earthworm generations. Iron-doped CDs (CDs-Fe) strongly bound to arsenate and arsenite, while nitrogen-doped CDs (CDs-N) exhibited weaker binding. Both CDs enhanced arsenate bioaccumulation without affecting its biotransformation, with most arsenate being reduced to arsenite. CDs-Fe generated significantly more reactive oxygen species than did CDs-N, causing stronger mitochondrial DNA (mtDNA) damage. Arsenate further exacerbated the oxidative mtDNA damage induced by CDs-N, as evidenced by increased reactive oxygen species, elevated 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-OHdG) levels, and a higher correlation between 8-OHdG and mtDNA damage. This was due to arsenic inhibiting the antioxidant enzyme catalase. This exacerbation was negligible with CDs-Fe because their strong binding with arsenic prevented catalase inhibition. Maternal mitochondrial DNA damage was inherited by filial earthworms, which experienced significant weight loss in coexposure groups coupled with mtDNA toxicity. This study reveals the synergistic genotoxicity of CDs and arsenate, suggesting that CDs could disrupt the arsenic biogeochemical cycle, increase arsenate risk to terrestrial animals, and influence ecosystem stability and health through multigenerational impacts.

Regulation of drought stress on nutrient cycle and metabolism of rhizosphere microorganisms in desert riparian forest

Microbial communities in desert riparian forest ecosystems have developed unique adaptive strategies to thrive in harsh habitats shaped by prolonged exposure to abiotic stressors. However, the influence of drought stress on the functional and metabolic characteristics of soil rhizosphere microorganisms remains unknown. Therefore, this study aimed to investigate the effects of drought stress on soil biogeochemistry and metabolism and analyze the relationship between the biogeochemical cycle processes and network of differentially-expressed metabolites. Using metagenomics and metabolomics, this study explored the microbial functional cycle and differential metabolic pathways within desert riparian forests. The predominant biogeochemical cycles in the study area were the Carbon and Nitrogen cycles, comprising 78.90 % of C, N, Phosphorus, Sulfur and Iron cycles. Drought led to increased soil C fixation, reduced C degradation and methane metabolism, weakened denitrification, and decreased N fixation. Furthermore, drought can disrupt iron homeostasis and reduce its absorption. The differential metabolic pathways of drought stress include flavonoid biosynthesis, arachidonic acid metabolism, steroid hormone biosynthesis, and starch and sucrose degradation. Network analysis of functional genes and metabolism revealed a pronounced competitive relationship between the C cycle and metabolic network, whereas the Fe cycle and metabolic network promoted each other, optimizing resource utilization. Partial least squares analysis revealed that drought hindered the expression and metabolic processes and functional genes, whereas the rhizosphere environment facilitated metabolic expression and the functional genes. The rhizosphere effect primarily promoted metabolic processes indirectly through soil enzyme activities. The integrated multi-omics analysis further revealed that the effects of drought and the rhizosphere play a predominant role in shaping soil functional potential and the accumulation of metabolites. These insights deepen our comprehension of desert riparian forest ecosystems and offer strong support for the functionality of nutrient cycling and metabolite dynamics.

Elemental composition and potential toxicity of the riverine macrophyte Podostemum ceratophyllum Michx. reflects land use in eastern North America

Land use influences surface water quality, often alleviating stoichiometric constraints on primary production and altering biogeochemical cycling. However, land use effects on nutrient content and potential trace metal accumulation in aquatic plants remain unclear, and high concentrations of metals and altered nutrient ratios could impact the health of herbivores and detritivores. We tested for land use effects on nutrient and trace metal accumulation in a widespread riverine macrophyte, Podostemum ceratophyllum, collected from 91 locations from Georgia to Maine, USA in 2014–2016. We quantified carbon (C), nitrogen (N), phosphorus (P), their molar and mass ratios, N and C stable isotopes, and 17 additional elements in dried plants collected from each location to estimate relationships between plant tissue content and watershed land use, which we quantified as agriculture, forest, and development. Decreasing forest cover was correlated with increasing δ15N, Mg, Mn, and P in Podostemum tissue. Increasing urban development was correlated with increasing δ15N, Mg and P, while increasing agriculture was correlated with a decrease in C: P and the concentrations of multiple metals, along with increases in P, Mg and δ15N. Decreases in ratios of N: P and C:P with increasing agriculture and urban development in the watershed indicate more rapid P storage relative to C and N in plant tissue, and increased resource quality of the plant to consumers in these watersheds. We also observed potentially toxic dietary concentrations of some trace metals (B, Cd, Tl, Zn) in plant tissue which could be related to the plant's natural herbivory defense system or to land use. We conclude that land use influences the elemental composition of P. ceratophyllum, and potentially the quality and toxicity of the plant to herbivores and detritivores in eastern North American rivers.

The increase of particle size shifts the biogeochemical cycle functions of mineral-associated microorganisms and weakens the mineral-associated organic carbon sink in mangrove soils.

Carbon with stable forms, such as mineral-associated organic carbon (MOC), is crucial for the sink capabilities in mangrove soils, and mineral-associated microorganisms (MMOs) are important players for the formation and metabolism of MOC. Therefore, the future successions of the MMO functions and MOC contents under the background of climate change are of value for a deeper understanding of mangrove ecology. The relative sea level rise caused by the global warming results in the increase of mangrove soil particle size (PS), which provides distinct microcosms for MMOs and MOC. However, the responses of MMO functions and MOC content to the PS increase of mangrove soils are unknown. The current study aims to reveal the succession regulations of MMO functions and their potential ecological impacts for the storages of MOC in different PS fractions, therefore widening our knowledge of future function migration and promoting the research development of mangrove.

Modeling freezing and BioGeoChemical processes in Antarctic sea ice

AbstractThe Antarctic sea ice, which undergoes annual freezing and melting, plays a significant role in the global climate cycle. Since satellite observations in the Antarctic region began, 2023 saw a historically unprecedented decrease in the extent of sea ice. Further ocean warming and future environmental conditions in the Southern Ocean will influence the extent and amount of ice in the Marginal Ice Zones (MIZ), the BioGeoChemical (BGC) cycles, and their interconnected relationships. The so‐called pancake floes are a composition of a porous sea ice matrix with interstitial brine, nutrients, and biological communities inside the pores. The ice formation and salinity are both dependent on the ambient temperature. To realistically model these multiphasic and multicomponent coupled processes, the extended Theory of Porous Media (eTPM) is used to develop Partial Differential Equations (PDEs) based high‐fidelity models capable of simulating the different seasonal variations in the region. All critical variables like salinity, ice volume fraction, and temperature, among others, are considered and have their equations of state. The phase transition phenomenon is approached through a micro‐macro linking scheme. In this paper, a phase‐field solidification model [4] coupled with salinity is used to model the microscale freezing processes and up‐scaled to the macroscale eTPM model. The evolution equations for the phase field model are derived following Landau‐Ginzburg order parameter gradient dynamics and mass conservation of salt allowing to model the salt trapped inside the pores. A BGC flux model for sea ice is set up to simulate the algal species present in the sea ice matrix. Ordinary differential equations (ODE) are employed to represent the diverse environmental factors involved in the growth and loss of distinct BGC components. Processes like photosynthesis are dependent on temperature and salinity, which are derived through an ODE‐PDE coupling with the eTPM model. Academic simulations and results are presented as validation for the mathematical model. These high‐fidelity models eventually lead to their incorporation into large‐scale global climate models.

Synergetic effects of chlorinated paraffins and microplastics on microbial communities and nitrogen cycling in deep-sea cold seep sediments

Chlorinated paraffins (CPs) and microplastics (MPs) are commonly found in deep-sea cold seep sediments, where nitrogen cycling processes frequently occur. However, little is known about their combined effects on sedimentary microbial communities and nitrogen cycling in these environments. This study aimed to investigate the synergistic impacts of CPs and MPs on microbial communities and nitrogen cycling in deep-sea cold seep sediments through microcosm experiments. Our results demonstrated that the presence of CPs and MPs induced significant alterations in microbial community composition, promoting the growth of Halomonas. Furthermore, CPs and MPs were found to enhance nitrification, denitrification and anammox processes, which was evidenced by the higher abundance of genes associated with nitrification and denitrification, as well as increased activity of denitrification and anammox in the CPs and MPs-treatment groups compared to the control group. Additionally, the enhanced influence of CPs and MPs on denitrification was expected to promote nitrate-dependent and sulfate-dependent anaerobic oxidation of methane, thereby resulting in less methane released into the environment. These findings shed light on the potential consequences of simultaneous exposure to CPs and MPs on biogeochemical nitrogen cycling in deep-sea cold seep sediments.

Middle Ordovician paleoenvironmental evolution of the western Laurentian carbonate platform: Evidence for persistent oxygenation of the shallow ocean and implications for biodiversification

The Great Ordovician Biodiversification Event (GOBE) encompasses a series of rapid and sustained diversification pulses unparalleled in Earth history. Despite the uniqueness and magnitude of the GOBE, a singular driving force for this critical interval has not been identified. Multiple hypotheses have been presented, some pairing the GOBE as cause and effect with extrinsic factors such as changing global temperatures, ocean chemistry, or paleogeography, while others have pointed to factors intrinsic to biology itself, such as the proliferation of skeletonization, predator-prey escalation, or the development of complex tiered seafloor communities. Sufficient data are not available at present to ascertain what combination of these factors was the key to generating the GOBE.Here, we present new paired carbon and sulfur isotope data (δ13Ccarb, δ13Corg, and δ34SCAS), along with iodine concentration data from a Darriwilian carbonate sequence exposed at Meiklejohn Peak in southwestern Nevada, USA. Within a detailed lithologic and biostratigraphic framework, these new data provide a robust correlation to chemostratigraphic zonation established in Baltica and eastern Laurentia along with insights into the evolution of Middle Ordovician biogeochemical cycling. Carbon isotope data indicate a slight (2 ‰) increase in the fractionation between carbonate carbon and organic matter (Δ13C) during the onset of the middle Darriwilian carbon isotope excursion (MDICE), and new carbonate-associated sulfate (CAS) sulfur isotope data are consistent with a decrease in global pyrite burial during this time. Both of these observations support previous work arguing for a synchronous increase in the [O2] of the global oceans. New iodine concentration data from Meiklejohn Peak also suggest a progressive and sustained increase in the [O2] of regional waters throughout the Darriwilian during a period of relative sea-level highstand. This expansion of stable and well‑oxygenated ecospace could have laid the foundation for rapid diversification during one of the largest pulses of the GOBE.

Drivers of microbial carbon biomass variability in two oceanic regions of the Gulf of Mexico

The microbial plankton community is an integral part of the pelagic ecosystem. It hosts essential functional groups that play a vital role in organic carbon production, release, uptake, and degradation within open-ocean ecosystems. Given its significance, carbon biomass estimates are urgently needed, especially in oligotrophic regions, to provide and enhance our knowledge of biogenic carbon pools. They also aid in validating biogeochemical models that characterize the functioning of these extensive marine ecosystems within the global carbon cycle. This study addresses the temporal variability of microbial community biomass in two oceanic zones: the west-central (Perdido) and southern (Coatzacoalcos) areas of the Gulf of Mexico. During three seasonally contrasting periods (nortes, rainy, and dry seasons), seawater samples were collected from the euphotic zone in both regions to estimate the carbon biomass of different pico- (<2–3 µm), nano-, and microplankton groups (>3–200 µm). Carbon biomass assessments for the microbial groups were based on their abundance and carbon conversion factors. Overall, we found a significant contribution of pico-prokaryotic components (heterotrophic bacteria, Prochloroccocus, and Synechoccocus) to the total microbial carbon stock of the euphotic zone (84–89 % global estimates). The finding suggests these microorganisms are key functional groups that drive carbon production and fate in the Gulf of Mexico ecosystem. Pico-cyanobacteria, especially Prochloroccocus, were the dominant primary producers (68–82 % total autotrophic carbon), mainly in the upper layer of the oligotrophic euphotic zone. This vertical pattern implies that the deep chlorophyll-a maximum (DCM) depth level was unrelated to a net increase in phytoplankton biomass in the three study periods. The distribution of microbial carbon biomass exhibited striking differences associated with winter mixing (the nortes season), high river discharge accompanied by cross-shelf transport (the rainy season), and the dynamics of mesoscale structures. Ecological aspects, such as the habitat preference of the organisms and the seasonal complementary development of mixotrophic and heterotrophic grazers and their prey, were also essential drivers in regulating the microbial carbon pool of both oceanic regions. The microbial carbon assessments conducted in this study contribute to identifying and quantifying key planktonic functional groups involved in the biogeochemical carbon cycle in the Gulf of Mexico open-ocean ecosystem.

Size fractionation informs microbial community composition and interactions in the eastern tropical North Pacific Ocean

Abstract Marine microorganisms are drivers of biogeochemical cycles in the world's oceans, including oxygen minimum zones (OMZs). Using a metabarcoding survey of the 16S rRNA gene, we investigated prokaryotic communities, as well as their potential interactions with fungi, at the coastal, offshore, and peripheral OMZ of the eastern tropical North Pacific. Water samples were collected along a vertical oxygen gradient, and large volumes were filtered through three size fractions, 0.22 μm, 2 μm, and 22 μm. The changes in community composition along the oxygen gradient were driven by Planctomycetota, Bacteroidota, Verrucomicrobiota, and Gammaproteobacteria; most are known degraders of marine polysaccharides and usually associated with the large particle-associated community. The relative abundance of Nitrososphaerota, Alphaproteobacteria, Actinomycetota, and Nitrospinota were high in free-living and small particle-associated communities. Network analyses identified putative interactions between fungi and prokaryotes in the particle-associated fractions, which have been largely overlooked in the ocean. In the small particle-associated network analysis, fungal ASVs had exclusively negative connections with SAR11 nodes. In the large particle-associated network analysis, fungal ASVs displayed both negative and positive connections with Pseudomonadota, SAR324, and Thermoplasmatota. Our findings demonstrate the utility of three-stage size-fractioned filtration in providing novel insights into marine microbial ecology.

Differential Cellular Response to Mercury in Non-Farmed Fish Species Based on Mitochondrial DNA Copy Number Variation Analysis.

Mercury (Hg) pro-oxidant role on biological systems and its biogeochemical cycle represent a serious threat due to its persistence in marine environment. As the mitochondrial genome is exposed to reactive oxygen species (ROS), the aim of the present study is the validation of the variation in the number of mitochondrial DNA copies (mtDNAcn) as biomarker of oxidative stress in aquatic environment. During summer 2021, three selected fish species (Mullus barbatus, Diplodus annularis and Pagellus erythrinus) were collected in Augusta Bay, one of the most Mediterranean contaminated areas remarkable by past Hg inputs, and in a control area, both in the south-east of Sicily. The relative mtDNAcn was evaluated by qPCR on specimens of each species from both sites, characterized respectively by higher and lower Hg bioaccumulation. M. barbatus and P. erythrinus collected in Augusta showed a dramatic mtDNAcn reduction compared to their control groups while D. annularis showed an incredible mtDNAcn rising suggesting a higher resilience of this species. These results align with the mitochondrial dynamics of fission and fusion triggered by environmental toxicants. In conclusion, we suggest the implementation of the mtDNAcn variation as a valid tool for the early warning stress-related impacts in aquatic system.