Recent efforts in research and development of small molecule based organic solar cells have led to power conversion efficiencies exceeding 10%. Understanding the incorporated interfaces in these devices is an utterly important parameter for their improvement. Here we investigate the influence of α‐sexithiophene (α‐6T) nanostructures on the performance parameters of α‐6T/C60 inverted bilayer solar cells. By in situ controlled growth, crystalline α‐6T nanostructures are formed in the devices and a correlation between the morphology of the structures and the device performance is presented. Under certain, well‐defined circumstances, we observe an efficiency increase of around 100% when implementing crystalline nanostructures.