Water contamination from antibiotics can have detrimental effects on one’s health. Consequently, treating the polluted water is required to fix this issue. Fe3O4-multiwalled Carbon Nanotubes (MWCNTs)-Bentonite nanocomposite has been successfully prepared using a customized co-precipitation process. The synthesized nanocomposite was used as an adsorbent to extract the ciprofloxacin from aqueous solutions. The synthesized nanocomposite was examined using several characterization methods. Scanning electron microscopy demonstrates that the Fe3O4 nanoparticles and bentonite are well-decorated on MWCNTs. The nanocomposite exhibits a high BET surface area of 221.577 m2/g and a pore volume of 0.411 cm3/g. According to the analysis, the average pore diameter was found to be 3.717 nm. Additionally, the adsorption model agreed with the Jovanovic model, which had a 137.35 mg/g adsorption capacity, with a χ2 of 2.161, and a good nonlinear R2 value of 0.999. Moreover, adsorbent was found to be highly stable even after 4 cycles. The ΔS and ΔH values were found to be positive, which suggested an endothermic process. The synthesized nanocomposite proved to be a viable option for water treatment applications, and there is no literature available on CIP antibiotic adsorption using Fe3O4-MWCNT-Bentonite nanocomposite.