Benthic Biofilms Research Articles

Strong large‐scale structure–function coupling in benthic bacteria is mediated by algae in a geodiverse river network

AbstractBenthic bacteria in stream ecosystems drive organic matter mineralization. However, knowledge on how this ecosystem function is driven by bacterial community composition in interaction with environmental conditions and organic matter resources is poor. This is especially true when considering the regional scale of river networks, at which environmental conditions vary in a scale‐dependent manner and are spatially structured due to asymmetrical water flow. Similarly, organic matter resources may have a terrestrial origin in remote headwaters or be sourced locally from algae living in close proximity to bacteria in benthic biofilms. We investigated benthic biofilm meta‐community structure and function across the > 6700 km2 river network of the near‐natural Vjosa in Albania and Greece and found a strong control of the benthic algal community on bacterial community composition (13.4% of variability explained). In addition, bacterial community composition has linkages to water chemistry, which itself is strongly shaped by the diverse geology in the catchment, and to dispersal, shaping metacommunity structure as a neutral process. Notably, bacterial community composition explained the largest single fraction of variability (31.5%) in extracellular enzymatic activities, while there was no dependency of enzyme ratios on organic matter nor environmental conditions. Synergistic effects between bacteria and algae accounted for additional 47.3% of variability in heterotrophic functioning, emphasizing the importance of algal–bacterial interactions in benthic biofilms. Our findings shed new light on bacterial structure–function coupling highlighting the importance of algal–bacterial interactions at the river network scale.

Reduced Streamflow From Water Diversion Alters Stream Ecology and Fish Behavior

ABSTRACTUnderstanding invertebrate and fish responses to altered streamflows is important for water management that balances ecological function and societal needs. We studied the impacts of a significant water diversion on a stream food web, including benthic biofilms, benthic macroinvertebrates (BMI), and drifting macroinvertebrates. In the dry season, drift flux (number of aquatic individuals or biomass/s) and drift concentration (individual/m3) were lower below the diversion than above. Drift concentration (biomass/m3) was slightly higher below the diversion, due to the presence of large Trichopterans. All measures of drift dropped to nearly zero at the end of the dry season below the diversion, when streamflows were reduced by > 90% below the diversion relative to above, representing a significant loss of food resources for trout. Simultaneously, native Rainbow Trout (Oncorhynchus mykiss) switched from drift to benthic foraging 1 month earlier below the diversion as drift and water velocities declined. The ecology of the benthos was not as impacted by the diversion: BMI densities were higher below the diversion, while benthic biofilm densities were similar at the two sites. The taxonomic composition of BMI was also similar between the sites, but fewer Ephemeroptera entered the drift below the diversion. Overall, the late season decrease in drift below the diversion despite the similar or higher benthic production suggests that streamflows influence food availability for trout even in the absence of benthic responses. Reduced streamflows, due to water diversions as studied here, or due to climate change, will likely reduce food resources and growth opportunities for fishes.

Nature-based bioreactors: Tackling antibiotic resistance in urban wastewater treatment

The overuse and misuse of antibiotics have accelerated the selection of antibiotic-resistant bacteria, significantly impacting human, animal, and environmental health. As aquatic environments are vulnerable to antibiotic resistance, suitable management practices should be adopted to tackle this phenomenon. Here we show an effective, nature-based solution for reducing antibiotic resistance from actual wastewater. We utilize a bioreactor that relies on benthic (biofilms) and planktonic microbial communities to treat secondary effluent from a small urban wastewater treatment plant (<10,000 population equivalent). This treated effluent is eventually released into the local aquatic ecosystem. We observe high removal efficiency for genes that provide resistance to commonly used antibiotic families, as well as for mobile genetic elements that could potentially aid in their spread. Importantly, we notice a buildup of sulfonamide (sul1 and sul2) and tetracycline (tet(C), tet(G), and tetR) resistance genes specifically in biofilms. This advancement marks the initial step in considering this bioreactor as a nature-based, cost-effective tertiary treatment option for small UWWTPs facing antibiotic resistance challenges.

Response of hyporheic biofilms to temperature changes and dissolved organic carbon enrichment: a mesocosm study

PurposeHyporheic biofilms are the central site for biogeochemical cycling in streams and rivers. In view of global warming and increasing human pressures, this study aimed to compare the response of hyporheic biofilm biomass and activities from an unpolluted reference stream reach surrounded by forest with those from a stream reach exposed to agricultural and urban land use using a mesocosm experiment in which the water temperature and dissolved organic carbon (DOC) contents were manipulated.MethodsHyporheic sediments collected in the field from the two study reaches (i.e. reference and impacted) were incubated in the laboratory at two different temperatures (10 °C, 14 °C) and wetted with three types of synthetic water (control [C] – 0 mg L−1; low DOC – 5 mg L−1; high DOC – 30 mg L−1) for four weeks. The responses of the hyporheic biofilms were measured weekly using structural (total protein content [TPC] as a proxy for biofilm biomass) and functional measures (electron transport system activity [ETSA] and community-level physiological profiling [CLPP]).ResultsThe response of hyporheic biofilms to temperature changes and DOC enrichment was site-specific for all studied measures (TPC, ETSA and CLPP, including measured average well colour development [AWCD]). The addition of DOC to biofilms from the pristine stream reach significantly heightened the responses at 10 °C, a temperature within the normal environmental temperature ranges of the reference location, but not at 14 °C, which was here, a temperature outside normal environmental range. On the other hand, biofilms from the impacted stream reach exhibited increased responses following DOC enrichment under both temperature regimes, with a particularly pronounced response at 14 ºC, in this case, both experimental temperatures were within the normal environmental temperature ranges of the study locations.ConclusionHyporheic biofilms were shown to be, like benthic biofilms, sensitive to temperature changes and organic enrichment, but their response to temperature changes and enrichment caused by climate change and/or other anthropogenic pressures (i.e. point and non-point pollution, removal of the riparian zone, hydromorphological modifications, etc.) was not simply linear but site-specific. The intensity of the response, characterized by increased activity and biomass production, appears to be constrained within the temperature ranges prevalent in the environment from which the biofilms originate. These findings emphasize the importance of site-specific considerations in predicting the impacts of climate change and anthropogenic pressures on these critical components of river and stream ecosystems.

Calcareous bioconstructions formation during the last interglacial (MIS 5) in the central Mediterranean: A consortium of algal, metazoan, and microbial framebuilders (Capo Colonna - Crotone basin - South Italy)

The last interglacial (MIS 5) transgressive-regressive deposits of the Capo Colonna marine terrace provide a good fossil example of a Central Mediterranean infra/circa-littoral setting, characterized by both calcareous coralline algae-dominated low-relief bioherms and biostromes, equivalent respectively to the modern coralligenous and mäerl habitats. The skeletal primary framework of the bioherms, consists of laminar to massive encrusting coralline red algae acting as main bioconstructors, with minor bryozoans, encrusting foraminifera, and serpulids as secondary frame-builders. Whereas, the autochthonous mäerl tabular beds are mainly composed of free-branched coralline red algae rudstone. A variable amount of sandy bioclastic sediment is laterally interbedded with the bioconstructions and tends to be entrapped in their cavities and pockets. All sedimentary sub-facies of the bioconstructions and associated sediment are rich in autochthonous syn-sedimentary microbial-mediated micrite, forming aphanitic, peloidal, clotted peloidal, and filamentous fabrics. Microbial micrite can also trap and bind a variable amount of grains, or be a secondary component of the sandy sediment as micritic rims surrounding the clasts. All these early-lithified micrites show the typical nanostructure of the primary microbial-mediated carbonates, rather than a detrital mud particles accumulation, as they consist of nanospheres coalescing into subhedral microcrystals that replace both microbial cells (present with several morphological types) and extracellular substances. This in turn implies the original widespread presence of benthic lithifying microbial biofilms which colonized both the cavities of the skeletal framework of the bioconstructions, and the intergranular space of the associated sediment. These microbial communities, thanks to the metabolic processes of the microorganisms that induced the carbonate precipitation, significantly contributed to the early cementation of all the studied deposits.

Nutritional qualities partially predict diet of amphipod grazers: implications for modern coastal biofilms in microbialite pools

Mobile metazoans in the Phanerozoic transformed shallow coastal habitats covered in biofilms into bioturbated mixed grounds. Benthic biofilms during this time rarely preserved into the fossil record as microbialites, and more specifically their layered form, stromatolites. Living microbialites are rare for this reason, in addition to other factors such as unfavourable modern geochemical conditions. Counterintuitively, macroinvertebrate grazers and laminated stromatolites coexist along the Nelson Mandela Bay coastline, South Africa. Here we aimed to determine if nutritional qualities of algae in these microbialite pools are linked to the diet of a dominant amphipod grazer, Melita zeylanica Stebbing, 1904. We assessed this in 3 microbialite pools using stable isotopes coupled to seasonal shifts in abundant food resources of microbialite biofilms and exposed (bleached and rimstone) or submerged (pool) macroalgae, Ulva spp. Amphipod diet was proportional to the quantity available (biomass) and nutritional properties of available algal food (energy, protein, total phosphorus and C:N ratios). Macroalgae in all states were the most nutritious, and the diet of M. zeylanica was dominated by submerged macroalgae. Although microbialite material had the worst nutritional profile, it was consumed in larger quantities compared to exposed bleached and rimstone macroalgae. Therefore, factors unrelated to nutritional profiles, such as predation, allelopathy or exposure risks, likely drive food choices. High levels of grazing on nutritious pool macroalgae likely releases most of the grazing pressure on the microbialite biofilm, therefore partially explaining why the microbialites can persist in this environment instead of being bioturbated through foraging.

Antioxidant micropeptins from a Microcoleus autumnalis-dominated benthic cyanobacterial mat from Western Ireland

Exploring the chemical diversity present in cyanobacterial mats increasingly frequent in fresh and marine waters is imperative for both evaluating risks associated with these diverse biofilms and their potential for biodiscovery. During a project aimed at the study of the (eco)toxicity of benthic cyanobacteria blooming in some lakes of the West of Ireland, three previously undescribed ahp-cyclodepsipeptides micropeptin LOF941 (1), micropeptin LOF925 (2) and micropeptin LOF953 (3) were isolated from the Microcoleus autumnalis-dominated benthic cyanobacterial biofilm collected from the shore of Lough O'Flynn, Co. Roscommon, Ireland. Their structures remain consistent in their amino acid sequence with the presence of an unusual methionine, and differ by their exocyclic side chains. The planar structures of the previously undescribed micropeptins were elucidated by 1D and 2D NMR and HRESIMS analyses, and their 3D configurations assessed by ROESY NMR and Marfey's analyses. The three isolated compounds showed no cytotoxic effects and all three compounds were shown to exhibit antioxidant properties, with 1 showing the highest bioactivity. Additionally, several micropeptin analogues are proposed from the methanolic fraction of the biofilm extract by UHPLC-HRESIMS/MS analysis and molecular networking. Notably, the known cyanotoxins anatoxin-a and dihydroanatoxin-a were annotated in the molecular network therefore raising issues about the toxicity of this cyanobacterial mat.

An informative short-term study on the impacts of a triclocarban/weathered multi-walled carbon nanotube-adsorbed complex to benthic organisms

Freshwater organisms are suitable models to study the fate of environmental pollutants. Due to their versatile and everyday use, many environmental pollutants such as triclocarban (TCC) or multi-walled carbon nanotubes (MWCNTs) enter environmental compartments very easily. TCC is known as a disinfectant and is declared as a highly aquatic toxicant. Multi-walled carbon nanotubes are used, e.g., in the automotive industry to improve plastic properties. Both TCCs and MWCNTs can pose major pollution hazards to various organisms. In addition, these substances can bind to each other due to their tendency to interact via strong hydrophobic interactions. Therefore, a short-term test was conducted to investigate the effects of the individual chemicals TCC and weathered MWCNTs (wMWCNTs) on a benthic biofilm and a grazing organism, Lymnaea stagnalis. Furthermore, the two compounds were coupled by an adsorption experiment resulting in a coupled complex formation (TCC + wMWCNTs). L. stagnalis showed no effects in terms of mortality. For benthic biofilm, the coupling test (TCC + wMWCNTs) showed a decrease of 58% in chlorophyll a (Chl-a) concentration. The main effect could be attributed to the wMWCNTs’ exposure alone (decrease of 82%), but not to presence of TCC. The concentration range of Chl-a upon TCC exposure alone was comparable to that in the control group (32 and 37 µg/cm2). With respect to the particulate organic carbon (POC) concentration, very similar results were found for the solvent control, the TCC, and also for the TCC + wMWCNTs group (3, 2.9, and 2.9 mg/cm2). In contrast to the control, a significant increase in POC concentration (100%) was observed for wMWCNTs, but no synergistic effect of TCC + wMWCNTs was detected.

Cross-domain interactions confer stability to benthic biofilms in proglacial streams

Cross-domain interactions are an integral part of the success of biofilms in natural environments but remain poorly understood. Here, we describe cross-domain interactions in stream biofilms draining proglacial floodplains in the Swiss Alps. These streams, as a consequence of the retreat of glaciers, are characterised by multiple environmental gradients and perturbations (e.g., changes in channel geomorphology, discharge) that depend on the time since deglaciation. We evaluate co-occurrence of bacteria and eukaryotic communities along streams and show that key community members have disproportionate effects on the stability of community networks. The topology of the networks, here quantified as the arrangement of the constituent nodes formed by specific taxa, was independent of stream type and their apparent environmental stability. However, network stability against fragmentation was higher in the streams draining proglacial terrain that was more recently deglaciated. We find that bacteria, eukaryotic photoautotrophs, and fungi are central to the stability of these networks, which fragment upon the removal of both pro- and eukaryotic taxa. Key taxa are not always abundant, suggesting an underlying functional component to their contributions. Thus, we show that there is a key role played by individual taxa in determining microbial community stability of glacier-fed streams.

Leaves stimulate aquatic phosphorus uptake by dark‐grown but not by light‐grown microbial communities in sediments: A laboratory study

Abstract It is a widely discussed topic in restoration ecology to use organic carbon (OC) management to increase nutrient uptake in chronically loaded agricultural streams. However, although nitrate uptake has been shown to correlated closely with the availability of dissolved OC, this relationship is less clear for phosphate. Likewise, the role of particulate OC (POC) on stimulating nutrient uptake has to be clarified. We aimed at investigating the effects of leaf additions on the net uptake of soluble reactive phosphorus and nitrate‐nitrogen from the water column by benthic biofilms in combined laboratory flume and batch experiments. Fine sediments were colonised under nutrient‐enriched conditions in the dark (dark‐grown heterotrophic biofilms) and under a 12/12‐hr dark/light cycle (light‐grown photoautotrophic biofilms) in flumes. In each light treatment, half of the biofilms were grown under strong OC‐limitation, the other half under near‐optimal C:N:P ratios. For the uptake experiments, the colonised sediments were incubated in nutrient‐enriched water to which (1) fresh alder leaves, (2) pre‐leached leaves, or (3) no leaves were added. Net nutrient uptake (or release) rates were determined via the change in nutrient concentrations in the water column over time. Net phosphorus uptake by dark‐grown biofilms was significantly increased by the addition of leaves. Despite their high initial nutrient leaching, fresh leaves showed stronger stimulating effects on the net P uptake than leached leaves over the entire experiment. Furthermore, biofilms grown under near‐optimum C:N:P ratios responded stronger to the POC supply than biofilms grown under C‐limited conditions. In contrast to dark‐grown biofilms, leaf additions had no significant effects on the net P uptake by light‐grown biofilms. We also found no effects of leaf additions on net nitrate uptake. Our study shows that an increased POC supply in nutrient‐impacted streams may boost heterotrophic phosphate uptake. However, the stimulating effect of the POC addition depends on a variety of POC‐dependent (e.g. respiration, heterotrophic assimilation, denitrification) and independent (e.g. adsorption, photoautotrophic assimilation) processes, making nutrient control via POC management challenging. We suggest application of management approaches that focus on restoration of riparian areas and wetlands to increase the amount of natural, complex POC with a moderate degradability, thus keeping the heterotrophic metabolism low but potentially stimulating in‐stream N and P retention.

Improving green sea urchin (Strongylocentrotus droebachiensis) hatchery production by determining effective settlement cues and post-settlement conditions

Hatchery production methodologies of Northeastern U.S. green sea urchins (Strongylocentrotus droebachiensis) have yielded low settlement success and post-settlement survival (approximately 1–5%) contributing towards high costs for producing juveniles for this emerging aquaculture species. These are likely attributed to hatchery operations needing to optimize settlement cues and post-settlement food supplies. This study examined a range of potential settlement cues using adult conspecifics or a benthic diatom biofilm (Cylindrotheca closterium or Nitzschia sp.) alone, or in combination with seawater conditioned with conspecifics or macroalga (Saccharina latissima or Ulva lactuca). This study also examined whether sea urchin post-settlement survival and growth would improve using a benthic diatom food source (C. closterium or Nitzschia sp.) alone or in combination with an additional macroalga food source (S. latissima or U. lactuca). Both trials were conducted under hatchery ambient (control 12 °C) or elevated (14 °C) temperatures to determine whether temperature elevation could enhance S. droebachiensis settlement success and post-settlement growth. This study also examined what influence biofilm age (1, 4 and 8 weeks) and seawater salinity (26, 30, 33 and 36) had on settlement success to help towards optimizing hatchery methods. This study did not improve post-settlement survival causing it to remain a significant barrier in mass producing juveniles, but it did increase juvenile growth by 30–40% and reduce growth variability when fed the benthic diatom C. closterium in combination with U. lactuca. This combination also served as an adequate settlement cue for this species. The use of a conspecific influenced biofilm substantially improved settlement success from 1 to 5% to 50–80%. Seasonal timing and age (4 weeks) of this biofilm indicated importance in yielding this success which will be location specific. The use of conspecific biofilms for improving post-settlement survival requires further investigation and is worth examining in combination with C. closterium and U. lactuca towards enhancing S. droebachiensis production in the Northeastern U.S. Elevating seawater temperature by 2 °C had no significant effect on settlement, growth, or survival in this study. Salinities of 30–33 were optimal yielding 3–7 times more settlement compared to salinities 27 and 36. This study highlights that settlement trials need to incorporate post-settlement survival measurements for at least 1–2 months to truly reflect the effectiveness of method interventions and consider extending the time before turning seawater flow back on into settlement tanks from 24 to 48 h by up to 72–96 h to facilitate greater settlement success if seawater quality parameters permit it.

Transformation of Biofilm to Carbon Sinks after Prolonged Droughts Linked with Algal Biodiversity Change.

Global climate change significantly increased the duration of droughts in intermittent rivers, impacting benthic microbial-mediated biogeochemical processes. However, the impact of prolonged droughts on the carbon contribution of intermittent rivers remains poorly understood. In this study, we investigated the potential effects of varying drought gradients (ranging from 20 to 130 days) on benthic biofilms community structure (algae, bacteria, and fungi) and their carbon metabolism functions (ecosystem metabolism and carbon dioxide (CO2) emission fluxes) using mesocosm experiments. Our findings indicate that longer drought durations lead to reduced alpha diversity and community heterogeneity, tighter interdomain networks, and an increased role of stochastic processes in community assembly, with a discernible threshold at around 60 days. Concurrently, the biofilm transforms into a carbon sink following a drought period of 60 days, as evidenced by the transformation of CO2 emission fluxes from 633.25 ± 194.69 to -349.61 ± 277.79 mg m-2 h-1. Additionally, the partial least-squares path model revealed that the resilience of algal communities and network stability may drive biofilm's transformation into a carbon sink, primarily through the heightened resilience of autotrophic metabolism. This study underscores the significance of the carbon contribution from intermittent rivers, as the shift in carbon metabolism functions with increasing droughts could lead to skewed estimations of current riverine carbon fluxes.

Benthic biofilms in riverine systems: A sink for microplastics and the underlying influences

Rivers are known as major pathways for transporting microplastics from terrestrial areas to the marine environment. However, the behavior of microplastics in terms of retention and transport within riverine systems remains unclear. While considerable efforts have been made to investigate the water column and sediment, limited attention has been given to understanding the interplay between microplastics and benthic biofilms. Therefore, this study aimed to examine the distribution of biofilm-trapped microplastics along the CaoE River and identify the factors influencing the immobilization of microplastics by benthic biofilms. The findings of this study revealed that benthic biofilms served as a sink of microplastics in the CaoE River, with an average abundance of 575 items/m2 in tributaries and 894 items/m2 in the main stream. The dominant shape of microplastics was fiber, while the primary polymer type was polyethylene terephthalate. The distribution of microplastics exhibited significant spatial heterogeneity, as indicated by their abundance and characteristics. In order to reveal the intriguing phenomenon, variations of influencing factors were estimated, including physicochemical characteristics of water, extracellular polymeric substances of benthic biofilms, and microbial communities of benthic biofilms. A partial least squares path modeling analysis was performed using these variables, revealing that water velocity and microbial diversity of benthic biofilms were the key factors influencing the interaction between microplastics and benthic biofilms. In summary, this study provides substantial evidence confirming the crucial role of benthic biofilms in the immobilization of microplastics, which expands concerns about microplastic pollution in the riverine systems. Furthermore, uncovering the underlying influences of microplastic-biofilm interactions will facilitate the development of effective strategies for the control and management of microplastic pollution.

A long‐established invasive species alters the functioning of benthic biofilms in lakes

Abstract Invasive species often transform environmental conditions, exclude native species and alter ecosystem functioning, including key ecosystem processes underpinning nutrient and energy cycles. However, such impacts have been most documented during periods of invasive species dominance; their influences on functioning at lower relative abundances and after long‐term establishment are less well‐known. We investigated the effects of Elodea canadensis, a macrophyte native to North America with a long invasion history in many regions of the world, on the biomass accrual and metabolism of littoral zone biofilms growing on organic and inorganic substrates. We deployed nutrient diffusing substrates (NDS) in 18 replicate transects distributed across six lakes, comprising three invaded by E. canadensis and three uninvaded reference lakes. NDS were amended with nitrogen (N), phosphorus (P) or N + P together, or were deployed as unamended controls. E. canadensis relative abundance varied widely in the invaded transects, ranging from 13% to 93% of all macrophyte cover. On control substrates, algal biomass, quantified as Chlorophyll‐a, and gross primary production (GPP) were 42% and 78% greater in the invaded compared to uninvaded lakes, respectively. Respiration rates, attributable to responses of both autotrophs and heterotrophs, were 45% greater on control substrates in invaded lakes. By contrast, N‐limitation of both biofilm GPP and respiration was 25% and 35% greater in uninvaded compared with invaded lakes. There was no evidence for differences in nutrients, light availability or grazing pressure between invaded and uninvaded transects. Rather, the observed differences in metabolism suggest that the presence of E. canadensis increases availability of N at local scales, reducing N‐limitation of biofilms and resulting in elevated rates of biofilm productivity. Our results demonstrate that invasive elodeids might have significant impacts on biofilms and processes associated with the cycling of nutrients, even when long‐established and present at lower relative abundances.

Biofilm community composition is changing in remote mountain lakes with a relative increase in potentially toxigenic algae

Mountain lakes provide clear drinking water to humankind but are strongly impacted by global change. Benthic biofilms are crucial for maintaining water quality in these oligotrophic lakes, yet little is known about the effects of global change on mountain biofilm communities. By combining analyses of metabarcoding data on 16S and 18S rRNA genes with climatic and environmental data, we investigated global change effects on the composition of biofilm prokaryotic and micro-eukaryotic assemblages in a five-year monitoring program of 26 Pyrenean lakes (2016–2020). Using time-decay relationships and within-lake dissimilarity modelling, we show that the composition of both prokaryotic and micro-eukaryotic biofilm communities significantly shifted and their biodiversity declined from 2016 to 2020. In particular, analyses of temporal trends with linear mixed models indicated an increase in the richness and relative abundance of cyanobacteria, including potentially toxigenic cyanobacteria, and a concomitant decrease in diatom richness and relative abundance. While these compositional shifts may be due to several drivers of global change acting simultaneously on mountain lake biota, water pH and hardness were, from our data, the main environmental variables associated with changes for both prokaryotic and micro-eukaryotic assemblages. Water pH and hardness increased in our lakes over the study period, and are known to increase in Pyrenean lakes due to the intensification of rock weathering as a result of climate change. Given predicted climate trends and if water pH and hardness do cause some changes in benthic biofilms, those changes might be further exacerbated in the future. Such biofilm compositional shifts may induce cascading effects in mountain food webs, threatening the resilience of the entire lake ecosystem. The rise in potentially toxigenic cyanobacteria also increases intoxication risks for humans, pets, wild animals, and livestock that use mountain lakes. Therefore, our study has implications for water quality, ecosystem health, public health, as well as local economies (pastoralism, tourism), and highlights the possible impacts of global change on mountain lakes.

Unexpected functional diversity of stream biofilms within and across proglacial floodplains despite close spatial proximity

AbstractHigh‐mountain streams are particularly vulnerable to climate change because they intimately interface with the cryosphere. As glaciers shrink and snowpack diminishes, proglacial streams will eventually shift from being glacier‐fed to streams fed by groundwater, snowmelt and precipitation. This shift will affect both the flow regime and physico‐chemical characteristics of streams, possibly also the structure and function of their benthic microbiome. Here, we applied genome‐resolved metagenomics to benthic biofilms from glacier‐fed streams and their groundwater‐fed tributaries within three proglacial floodplains in the Swiss Alps. Despite the close spatial proximity between both stream types, their microbiome structure differed consistently for both prokaryotes and eukaryotes. The glacier‐fed stream microbiome was taxonomically and functionally less diverse than its groundwater‐fed counterpart, and had smaller genomes, but with conservation of the central metabolic functions primarily related to nitrogen and sulfur cycling. Consequently, much higher functional variability was associated with the microbiome of tributary streams, mainly due to abundant genes involved in the transport and degradation of organic matter. Our findings suggest that glacier shrinkage will cause shifts in the functioning of benthic microbiomes of proglacial floodplains with yet unknown consequences for downstream biogeochemistry.

Glacial recession in Andean North-Patagonia (Argentina): microbial communities in benthic biofilms of glacier-fed streams

Glacial recession in Andean North-Patagonia (Argentina): microbial communities in benthic biofilms of glacier-fed streams

Experimental nutrient enrichment of forest streams reduces ecosystem nitrogen and phosphorus storage

AbstractStreams store nutrients in standing stocks of organic matter (OM) and associated biologically sequestered elements. Unlike standing stocks of autotrophs, detritus is depleted by nutrient enrichment, potentially reducing areal storage of detritus‐associated nutrients. To test effects of nutrient‐loading on storage of nitrogen (N) and phosphorus (P) by autotrophic and detrital‐pool compartments, we quantified the effects of 2 yr of continuous experimental N and P additions on fine benthic organic matter (FBOM), leaves, wood, and biofilms in five forest streams. Our design tested the relative strength of N vs. P on OM nutrient content, areal OM storage, and areal nutrient storage in OM types. Enrichment increased nutrient content of all OM types; %P increased more than %N in leaves, wood, and biofilms, but not FBOM. Biofilm %P and %N increased more than in all detrital types. Areal FBOM and leaf storage declined with nutrient enrichment. Biofilm standing stocks were generally higher with enrichment but were not related to the streamwater N and P gradients. Despite increased OM nutrient content, total areal nutrient storage in leaves and wood decreased due to reduced OM storage. Although annual nutrient storage was stabilized by FBOM, seasonal variation in nutrient storage increased with enrichment. Leaf‐associated nutrient storage was reduced in most seasons, whereas FBOM and biofilm nutrient storage increased in winter and spring, respectively, relative to pretreatment. Overall, the combined responses of all OM types to enrichment resulted in reduced storage and altered seasonal availability of carbon and nutrients, which has implications for consumers and downstream processes.

Impact of anthropogenic sounds (pile driving, drilling and vessels) on the development of model species involved in marine biofouling

The uncontrolled colonization of benthic organisms on submerged surfaces, also called biofouling, causes severe damage in the shipping and aquaculture industries. Biofouling starts with a benthic biofilm composed of a complex assemblage of microbes, bacteria and benthic diatoms, called microfouling, on which macrofouling invertebrate species settle and grow. Invertebrate larvae may use natural soundscapes to orientate inshore and choose their optimal habitat. Recent studies have demonstrated that ship sounds enhance the larval settlement and growth of several invertebrate species, such as mussels, associated with biofouling. Among invertebrates, effects of sound generated by offshore human activities are still poorly studied. This study aims to assess the effect of pile driving, drilling and vessel sounds on model species associated with micro and macrofouling. First, the biofilm development of Navicula pelliculosa and Amphora coffeaeformis was assessed, then, the larval development of the blue mussel (Mytilus edulis) was evaluated from the D-veliger to the postlarval stage. Mussel larvae and microalgae were exposed 12 h each day in tanks (Larvosonic) adapted to sound experiments under controlled conditions. All anthropogenic sounds induced a thinner N. pelliculosa biofilm coupled with a lower microalgae concentration. The drilling sound had a stronger effect on the biofilm thickness. The drilling sound significantly reduced the pediveliger settlement and the postlarvae clearance rate by 70.4% and tended to diminish settler sizes compared to control sound. Contrary to our expectation, pile driving tended to enhance larval recruitment by 22% (P=0.077) and the boat sound did not stimulate larval settlements or recruitment. Drilling sound generated a stressful acoustic environment for pediveliger settlements and postlarvae seem to maintain their shell valves closed to preserve energy. We identify potential causes and mechanisms involved in these impacts of anthropophony on larval ecology and microfouling dynamics.

Synecological response of spring benthic prokaryotes and macroinvertebrates to Paleozoic roof pendant‐derived calcium

AbstractDespite the ecological significance of desert springs, little is known about relationships between spring hydrogeochemistry and ecology, particularly over multiple trophic levels. Here, we surveyed microbial communities (bacteria and archaea) and benthic macroinvertebrate (BMI) communities in springs that recharge through granitoid bedrock in Owens Valley, CA, to determine whether subtle geochemical differences imparted by metamorphosed roof pendant weathering in the source area affect spring ecosystems. Relative to other springs, roof‐pendant‐recharged springs were characterized by elevated (1) Ca2+/Na+, Ca2+/Mg2+, and divalent/monovalent cation ratios, (2) relative abundance of taxa inferred to be benthic aerobes and prosthecate/stalked bacteria, and (3) abundance and diversity of shredder and collector gatherer BMIs. These BMI feeding groups graze on biofilm communities and stimulate bacterial degradation of particulate organic matter, consistent with extensive bacteria–BMI connections in co‐occurrence networks in these springs. Springs not impacted by roof pendants were instead enriched with taxa inferred to be anaerobes, chemolithotrophs, and low‐diversity BMI communities with poor bacteria–BMI network connectivity. We speculate that excess Ca2+ derived from roof pendant weathering plays a key role in biofilm formation on coarse granite substrates, with subsequent trophic interactions between benthic microbial biofilms and diverse BMI shredders/collector gatherers.