Belowground Traits Research Articles

Soil-root interaction in the rhizosheath regulates the water uptake of wheat

The development of crops better adapted to endure weather extremes requires knowledge of the belowground traits that have potential to improve plant water uptake. Recent evidence has indicated that root induced modification of soil pore geometry of the rhizosheath is linked with drought tolerance of crops. Here we sought to understand whether the regulation of plant water uptake by rhizosheath is mediated through the rhizodeposits present at the soil-root interface. We compared eight wheat cultivars and demonstrated that cultivars with longer root hairs and greater rhizosheath mass and cover transpired more water. The wheat cultivars with less rhizosheath had the highest concentration of trehalose in the rhizosheath. Trehalose may increase the surface tension of soil water, which could further modify the transpiration of cultivars with less rhizosheath. Moreover, rhizosheath mass and cover had significant negative association with the bacterial abundance, indicating a link between metabolite concentration and bacterial abundance in the rhizosheath. We propose that the complex interactions of root, microbes and rhizodeposits in the rhizosheath have the potential to regulate water uptake by crops. The root and rhizosheath traits highlighted here can be targeted to develop crops with better ability to uptake water.

Above- and below-ground functional trait coordination in the Neotropical understory genus Costus.

The study of plant functional traits and variation among and within species can help illuminate functional coordination and trade-offs in key processes that allow plants to grow, reproduce and survive. We studied 20 leaf, above-ground stem, below-ground stem and fine-root traits of 17 Costus species from forests in Costa Rica and Panama to answer the following questions: (i) Do congeneric species show above-ground and below-ground trait coordination and trade-offs consistent with theory of resource acquisition and conservation? (ii) Is there correlated evolution among traits? (iii) Given the diversity of habitats over which Costus occurs, what is the relative contribution of site and species to trait variation? We performed a principal components analysis (PCA) to assess for the existence of a spectrum of trait variation and found that the first two PCs accounted for 21.4 % and 17.8 % of the total trait variation, respectively, with the first axis of variation being consistent with a continuum of resource-acquisitive and resource-conservative traits in water acquisition and use, and the second axis of variation being related to the leaf economics spectrum. Stomatal conductance was negatively related to both above-ground stem and rhizome specific density, and these relationships became stronger after accounting for evolutionary relatedness, indicating correlated evolution. Despite elevation and climatic differences among sites, high trait variation was ascribed to individuals rather than to sites. We conclude that Costus species present trait coordination and trade-offs that allow species to be categorized as having a resource-acquisitive or resource-conservative functional strategy, consistent with a whole-plant functional strategy with evident coordination and trade-offs between above-ground and below-ground function. Our results also show that herbaceous species and species with rhizomes tend to agree with trade-offs found in more species-rich comparisons.

Effect of High-Temperature Stress on Plant Physiological Traits and Mycorrhizal Symbiosis in Maize Plants.

Increasing high temperature (HT) has a deleterious effect on plant growth. Earlier works reported the protective role of arbuscular mycorrhizal fungi (AMF) under stress conditions, particularly influencing the physiological parameters. However, the protective role of AMF under high-temperature stress examining physiological parameters with characteristic phospholipid fatty acids (PLFA) of soil microbial communities including AMF has not been studied. This work aims to study how high-temperature stress affects photosynthetic and below-ground traits in maize plants with and without AMF. Photosynthetic parameters like quantum yield of photosystem (PS) II, PSI, electron transport, and fractions of open reaction centers decreased in HT exposed plants, but recovered in AMF + HT plants. AMF + HT plants had significantly higher AM-signature 16:1ω5cis neutral lipid fatty acid (NLFA), spore density in soil, and root colonization with lower lipid peroxidation than non-mycorrhizal HT plants. As a result, enriched plants had more active living biomass, which improved photosynthetic efficiency when exposed to heat. This study provides an understanding of how AM-mediated plants can tolerate high temperatures while maintaining the stability of their photosynthetic apparatus. This is the first study to combine above- and below-ground traits, which could lead to a new understanding of plant and rhizosphere stress.

Weed competitive ability in wheat: a peek through in its functional significance, present status and future prospects.

Weed competitive ability of a crop is one of the most widely explored aspects in the current scenario of aftermaths of synthetic herbicides such as herbicide resistant weeds emergence, residue accumulation in trophic levels; increased demands of organic produce, global climatic shifts, and other environmental issues. Further weed infestations are known to cause much more economic losses relative to crop attacks by pests. To understand the basic characteristics and underlying processes governing the competitive ability of a crop is therefore prudent, particularly in staples such as wheat. We discuss here an overview of the existing attributes of wheat-weed environment, the significance of crop competitiveness and various associated above-ground and below-ground traits (pertaining to early seed vigor and early seedling germination) discerned through biological, classical genetics and high throughput omics toolbox to provide numerous resources in terms of genome and transcriptome sequences, potential QTLs, genetic variation, molecular markers, association mapping studies, and others. Competitiveness is a cumulative response manifested as morphological, physiological, biochemical or allelochemical response ultimately driven through genetic architecture of a crop and its interaction with environment. Development of wheat competitive cultivar thus requires interdisciplinary approaches and germplasm screening to identify potential donors for competitiveness is an attractive and feasible alternative. For which utilization of landraces and other wild species, already proven to house sufficient genetic heterogeneity, thus poses a competitive advantage. Further, the availability of novel breeding techniques such as rapid generation advance could speed up the development of competitive wheat ideotype.

Responses of fine root exudation, respiration and morphology in three early successional tree species to increased air humidity and different soil nitrogen sources.

Global climate change scenarios predict an increase in air temperature, precipitation and air humidity for northern latitudes. Elevated air humidity may significantly reduce the water flux through forest canopies and affect interactions between water and nutrient uptake. However, we have limited understanding of how altered transpiration would affect root respiration and carbon (C) exudation as fine root morphology acclimates to different water flux. We investigated the effects of elevated air relative humidity (eRH) and different inorganic nitrogen sources (NO3- and NH4+) on above and belowground traits in hybrid aspen (Populus × wettsteinii Hämet-Ahti), silver birch (Betula pendula Roth.) and Scots pine (Pinus sylvestris L.) grown under controlled climate chamber conditions. The eRH significantly decreased the transpiration flux in all species, decreased root mass-specific exudation in pine, and increased root respiration in aspen. eRH also affected fine root morphology, with specific root area increasing for birch but decreasing in pine. The species comparison revealed that pine had the highest C exudation, whereas birch had the highest root respiration rate. Both humidity and nitrogen treatments affected the share of absorptive and pioneer roots within fine roots; however, the response was species-specific. The proportion of absorptive roots was highest in birch and aspen, the share of pioneer roots was greatest in aspen and the share of transport roots was greatest in pine. Fine roots with lower root tissue density were associated with pioneer root tips and had a higher C exudation rate. Our findings underline the importance of considering species-specific differences in relation to air humidity and soil nitrogen availability that interactively affect the C input-output balance. We highlight the role of changes in the fine root functional distribution as an important acclimation mechanism of trees in response to environmental change.

Aboveground herbivory causes belowground changes in twelve oak Quercus species: a phylogenetic analysis of root biomass and non‐structural carbohydrate storage

Plant ecosystem structure is understood to be a result of complex multitrophic interactions. Most multitrophic studies focus on plant aboveground adaptations to aboveground herbivore pressures, neglecting belowground adaptations in response to aboveground damage. Differential investment in root structures may allow plants to compensate for tissue loss or damage due to herbivores. Furthermore, phylogeny may constrain a plant's ability to adapt belowground. We examined the belowground responses of 12 species of oak Quercus to varying locations and intensities of simulated herbivore damage. We first established that oak belowground traits responded to aboveground herbivory by measuring patterns of investment in coarse versus fine root structures and re‐allocation of non‐structural carbohydrates (NSC) to root storage. We then tested whether phylogeny could explain variations in investment patterns using phylogenetic independent contrasts. Plant adaptations to aboveground herbivory included allocating biomass and carbon reserves to root structures, depending on the location and intensity of herbivore damage. NSC re‐allocation to root storage was observed when oak species experienced any type of damage, but damage to lateral tissues caused a greater re‐allocation than apical damage or control treatments. We found that most belowground responses to aboveground herbivory are species‐specific and may be adapted for environmental conditions or type of herbivory. Some responses to herbivore damage, such as changes in fine‐root mass and root sugar concentrations, were phylogenetically constrained. Phylogenetic constraints generally occur when there is severe damage at the apical meristem. Plants may adapt to aboveground tissue loss due to varying herbivore pressures (i.e. varying location and intensity of damage) by differentially investing in root types and NSC re‐allocation to root storage. Understanding linkages between and phylogenetic constraints of plant belowground responses to aboveground herbivory will improve our understanding of the ecological processes involved in multitrophic interactions.

Shoot-Root Interplay Mediates Defoliation-Induced Plant Legacy Effect.

Shoot defoliation by grazers or mowing can affect root traits of grassland species, which may subsequently affect its aboveground traits and ecosystem functioning (e.g., aboveground primary production). However, experimental evidence for such reciprocal feedback between shoots and roots is limited. We grew the perennial grass Leymus chinensis–common across the eastern Eurasian steppe–as model species in a controlled-hydroponics experiment, and then removed half of its shoots, half of its roots, or a combination of both. We measured a range of plant aboveground and belowground traits (e.g., phenotypic characteristics, photosynthetic traits, root architecture) in response to the shoot and/or root removal treatments. We found the regenerated biomass was less than the lost biomass under both shoot defoliation and root severance, generating a under-compensatory growth. Root biomass was reduced by 60.11% in the defoliation treatment, while root severance indirectly reduced shoot biomass by 40.49%, indicating a feedback loop between shoot and root growth. This defoliation-induced shoot–root feedback was mediated by the disproportionate response and allometry of plant traits. Further, the effect of shoot defoliation and root severance on trait plasticity of L. chinensis was sub-additive. That is, the combined effects of the two treatments were less than the sum of their independent effects, resulting in a buffering effect on the existing negative influences on plant persistence by increased photosynthesis. Our results highlight the key role of trait plasticity in driving shoot–root reciprocal feedbacks and growth persistence in grassland plants, especially perennial species. This knowledge adds to earlier findings of legacy effects and can be used to determine the resilience of grasslands.

Functional diversity and identity of plant genotypes regulate rhizodeposition and soil microbial activity.

Our understanding of the linkages between plant diversity and soil carbon and nutrient cycling is primarily derived from studies at the species level, while the importance and mechanisms of diversity effects at the genotype level are poorly understood. Here we examine how genotypic diversity and identity, and associated variation in functional traits, within a common grass species, Anthoxanthum odoratum, modified rhizodeposition, soil microbial activity and litter decomposition. Root litter quality was not significantly affected by plant genotypic diversity, but decomposition was enhanced in soils with the legacy of higher genotypic diversity. Plant genotypic diversity and identity modified rhizodeposition and associated microbial activity via two independent pathways. Plant genotypic diversity enhanced soil functioning via positive effects on variation in specific leaf area and total rhizodeposition. Genotype identity affected both rhizodeposit quantity and quality, and these effects were mediated by differences in mean specific leaf area, shoot mass and plant height. Rhizodeposition was more strongly predicted by aboveground than belowground traits, suggesting strong linkages between photosynthesis and root exudation. Our study demonstrates that functional diversity and identity of plant genotypes modulates belowground carbon supply and quality, representing an important but overlooked pathway by which biodiversity affects ecosystem functioning.

An integrated framework of plant form and function: the belowground perspective.

Plant trait variation drives plant function, community composition and ecosystem processes. However, our current understanding of trait variation disproportionately relies on aboveground observations. Here we integrate root traits into the global framework of plant form and function. We developed and tested an overarching conceptual framework that integrates two recently identified root trait gradients with a well-established aboveground plant trait framework. We confronted our novel framework with published relationships between above- and belowground trait analogues and with multivariate analyses of above- and belowground traits of 2510 species. Our traits represent the leaf and root conservation gradients (specific leaf area, leaf and root nitrogen concentration, and root tissue density), the root collaboration gradient (root diameter and specific root length) and the plant size gradient (plant height and rooting depth). We found that an integrated, whole-plant trait space required as much as four axes. The two main axes represented the fast-slow 'conservation' gradient on which leaf and fine-root traits were well aligned, and the 'collaboration' gradient in roots. The two additional axes were separate, orthogonal plant size axes for height and rooting depth. This perspective on the multidimensional nature of plant trait variation better encompasses plant function and influence on the surrounding environment.

Grazing alters species relative abundance by affecting plant functional traits in a Tibetan subalpine meadow.

Domestic livestock grazing has caused dramatic changes in plant community composition across the globe. However, the response of plant species abundance in communities subject to grazing has not often been investigated through a functional lens, especially for belowground traits. Grazing directly impacts aboveground plant tissues, but the relationships between above‐ and belowground traits, and their influence on species abundance are also not well known. We collected plant trait and species relative abundance data in the grazed and nongrazed meadow plant communities in a species‐rich subalpine ecosystem of the Qinghai–Tibet Plateau. We measured three aboveground traits (leaf photosynthesis rate, specific leaf area, and maximum height) and five belowground traits (root average diameter, root biomass, specific root length, root tissue density, and specific root area). We tested for shifts in the relationship between species relative abundance and among all measured traits under grazing compared with the nongrazed meadow. We also compared the power of above‐ and belowground traits to predict species relative abundance. We observed a significant shift from a resource conservation strategy to a resource acquisition strategy. Moreover, this resource conservation versus resource acquisition trade‐off can also determine species relative abundance in the grazed and nongrazed plant communities. Specifically, abundant species in the nongrazed meadow had aboveground and belowground traits that are associated with high resource conservation, whereas aboveground and belowground traits that are correlated with high resource acquisition determined species relative abundance in the grazed meadow. However, belowground traits were found to explain more variances in species relative abundance than aboveground traits in the nongrazed meadow, while aboveground and belowground traits had comparable predictive power in the grazed meadow. We show that species relative abundance in both the grazed and the nongrazed meadows can be predicted by both aboveground traits and belowground traits associated with a resource acquisition versus conservation trade‐off. More importantly, we show that belowground traits have higher predictive power of species relative abundance than aboveground traits in the nongrazed meadow, whereas in the grazed meadows, above‐ and belowground traits had comparable high predictive power.

Limited evidence of coupling between above and belowground functional traits in tropical dry forest seedlings

Introduction: Water availability is one of the main factors determining the distribution of woody species in the tropics. Although the functional mechanisms that determine the species tolerance to water deficit have been extensively studied in adult individuals, the responses of early ontogenetic stages have been less explored. Objective: To identify functional strategies and trait correlations between different seedlings' dimensions (leaf, stem, and root). We expect limited coordination between above and below-ground functional traits due to a single conservation-acquisition trade-off cannot capture the variability of functions and environmental pressures to which the root system is subjected. Methods: We measured 12 functional traits belonging to 38 seedling species in a tropical dry forest in Colombia. We explored the relationships between pairs of traits using Pearson correlations, and to obtain an integrated view of the functional traits, a principal component analysis (PCA) was performed. Results: The results showed limited evidence of linkage between above- and below-ground traits, but we did find significant correlations between traits for the continuum of conservative and acquisitive strategies. Root traits related to water and nutrient take capacity formed an orthogonal axis to the acquisitive-conservative continuum. Conclusions: Our results showed that dry forest seedlings have different functional strategies to cope with water deficit. The incorporation of root traits helps to explain new functional strategies not reported for leaf and stem traits. This study contributes to understanding the mechanisms that explain species coexistence and is particularly relevant for predicting future forest trajectories.

Cultivars of popular restoration grass developed for drought do not have higher drought resistance and do not differ in drought‐related traits from other accessions

Numerous functional traits have been identified as key contributors to plant performance under drought. However, many of these traits, specifically root traits, are rarely considered in the development of native plant cultivars. In this study, we assessed whether cultivars of the perennial grass Elymus trachycaulus (Slender wheatgrass) developed for drought differ in (a) drought resistance (i.e. a plant's ability to maintain aboveground biomass productivity under water deficit), (b) aboveground and belowground traits, and (c) trait responses to drought from other accessions (i.e. other cultivars, wild accessions). We also evaluated trait plasticity, assessed whether multivariate trait relationships varied between control and drought conditions, and determined which suites of traits are related to drought resistance. We worked with seedlings at two developmental stages to assess whether patterns vary ontogenetically. E. trachycaulus cultivars developed for drought did not differ from other accessions in drought resistance or traits related to drought‐coping strategies. The effects of drought and accession on drought resistance, traits, and trait plasticity varied by developmental stage, but relationships among traits varied little between the two developmental stages. A primary axis of functional variation related to resource acquisition (plant height, root length, root tips) was consistently associated with drought resistance. However, which secondary axes were related to drought resistance varied by developmental stage and moisture condition. Our results suggest that traits and performance of commonly used cultivars ought to be reexamined to determine whether they are actually the best candidates for revegetation projects in specific contexts.

Mycorrhizal associations change root functionality: a 3D modelling study on competitive interactions between plants for light and nutrients.

Summary Recent studies show that the variation in root functional traits can be explained by a two‐dimensional trait framework, containing a ‘collaboration’ axis in addition to the classical fast–slow ‘conservation’ axis. This collaboration axis spans from thin and highly branched roots that employ a ‘do‐it‐yourself’ strategy to thick and sparsely branched roots that ‘outsource’ nutrient uptake to symbiotic arbuscular mycorrhizal fungi (AMF).Here, we explore the functionality of this collaboration axis by quantifying how interactions with AMF change the impact of root traits on plant performance. To this end, we developed a novel functional–structural plant (FSP) modelling approach that simulates plants competing for light and nutrients in the presence or absence of AMF.Our simulation results support the notion that in the absence of AMF, plants rely on thin, highly branched roots for their nutrient uptake. The presence of AMF, however, promotes thick, unbranched roots as an alternative strategy for uptake of immobile phosphorus, but not for mobile nitrogen.This provides further support for a root trait framework that accommodates for the interactive effect of roots and AMF. Our modelling study offers unique opportunities to incorporate soil microbial interactions into root functionality as it integrates consequences of belowground trait expression.

Patterns of genetic diversity vary among shoot and root functional traits in Norway spruce Picea abies along a latitudinal gradient

Roots constitute a major segment of plant biomass, and variation in belowground traits in situ correlates with environmental gradients at large spatial scales. Local adaptation of populations maintains intraspecific genetic variation in various shoot traits, but the contribution of genetic factors to adaptation to soil heterogeneity remains poorly known. I established a common‐garden experiment with three Norway spruce Picea abies populations sampled between 60° and 67° N in Finland, each represented by 13 or 15 maternal families, to determine whether belowground traits are as genetically differentiated among populations as those in the shoot along a collective latitudinal gradient of temperature and soil heterogeneity. Two growing season simulations enabled testing for among‐population differences in phenotypic plasticity. I phenotyped 777 first‐year seedlings from shoot to root to capture functional traits that may influence survival in the wild: autumn phenology, shoot growth, root system size, root architecture, root morphology and growth allocation. All traits exhibited within‐population genetic diversity, but among‐population differentiation ranged from strong in shoot traits to nonexistent in root system architecture and morphology that are scaled to root system size. However, latitudinal trends characterised root‐to‐shoot ratio and root tip‐to‐shoot ratio that account for among‐population differences in aboveground growth. Overall trait variability was multidimensional with variable among‐ versus within‐population trends: for example, phenology and shoot growth covaried across populations, but their association within individual populations was variable. Shoot growth correlated positively with root system size, but not with root architecture or morphology. Finally, the two higher‐latitude populations exhibited greater phenotypic plasticity in shoot traits and growth allocation. The results demonstrate varying patterns of genetic variation in functional traits of Norway spruce in the boreal zone, suggesting simultaneous adaptation to multiple environmental factors. Functional traits that exhibit phenotypic plasticity, genetic diversity and little covariation will promote long‐term survival of populations in fluctuating environments.

Disentangling the Ecological Determinants of Species and Functional Trait Diversity in Herb-Layer Plant Communities in European Temperate Forests

Forest herb-layer vegetation responds sensitively to environmental conditions. This paper compares drivers of both taxonomic, i.e., species richness, cover and evenness, and functional herb-layer diversity, i.e., the diversity of clonal, bud bank and leaf-height-seed plant traits. We investigated the dependence of herb-layer diversity on ecological determinants related to soil properties, climatic parameters, forest stand characteristics, and topographic and abiotic and biotic factors associated with forest floor structure. The study was conducted in different forest types in Slovenia, using vegetation and environmental data from 50 monitoring plots (400 m2 each) belonging to the ICP Forests Level I and II network. The main objective was to first identify significant ecological predictors and then quantify their relative importance. Species richness was strongly determined by forest stand characteristics, such as richness of the shrub layer, tree layer shade-casting ability as a proxy for light availability and tree species composition. It showed a clear positive relation to soil pH. Variation in herb-layer cover was also best explained by forest stand characteristics and, to a lesser extent, by structural factors such as moss cover. Species evenness was associated with tree species composition, shrub layer cover and soil pH. Various ecological determinants were decisive for the diversity of below-ground traits, i.e., clonal and bud bank traits. For these two trait groups we observed a substantial climatic signal that was completely absent for taxonomy-based measures of diversity. In contrast, above-ground leaf-height-seed (LHS) traits were driven exclusively by soil reaction and nitrogen availability. In synthesis, local stand characteristics and soil properties acted as the main controlling factors for both species and trait diversity in herb-layer communities across Slovenia, confirming many previous studies. Our findings suggest that the taxonomic and functional facets of herb-layer vegetation are mainly influenced by a similar set of ecological determinants. However, their relative importance varies among individual taxonomy- and functional trait-based diversity measures. Integrating multi-faceted approaches can provide complementary information on patterns of herb-layer diversity in European forest plant communities.

The root system of guar: Spatial and temporal analysis of root and nodule development

AbstractGuar (Cyamopsis tetragonoloba [L.] Taub.) is a leguminous crop plant produced in semi‐arid regions worldwide, primarily for industrial uses of guar gum. Little research has been conducted on critical belowground traits of the plant, particularly on spatial and temporal development of the root system, including nodules. Providing such analysis was the objective of this research. We observed root and nodule character traits at regular time intervals in 130‐cm‐tall soil columns sectioned by depth in 2 years. In this tap‐rooted plant, root weight was greatest at the soil surface (0–15 cm) and decreased with depth. Root length density (RLD) from 0 to 15 cm and 15 to 30 cm soil depths was similar. The RLD and root weight were generally minimal in deeper soil layers, although deeper roots seem to play an important role in water uptake for guar, especially in drought conditions. Compared to most crops, guar has fine rooting and a small root‐to‐shoot ratio. At all soil depths analysed, ≥86% of root length was comprised of roots <1 mm in diameter, although most were very fine roots <0.5 mm. The root‐to‐shoot ratio ranged from 0.055 to 0.17 g g−1 over the growing seasons. Significant accumulation of nodule weight occurred by 60 days, as did the first observations of nodule senescence, but nodule growth continued after this time. Most nodules and nodule weight were concentrated near the soil surface and the average weight per nodule decreased with depth, although smaller nodules were present at all depths. Because guar is typically grown in dryland conditions in hot semi‐arid regions, nodules near the soil surface may often be susceptible to shedding or loss of function due to dehydration and/or heat stress and the plant may rely on deeper nodules for N fixation. The basic biological information provided in this report is needed to hasten progress in guar genetic improvement and management.

Plant traits are differentially linked to performance in a semiarid ecosystem.

A central principle in trait-based ecology is that trait variation has an adaptive value. However, uncertainty over which plant traits influence individual performance across environmental gradients may limit our ability to use traits to infer ecological processes at larger scales. To better understand which traits are linked to performance under different precipitation regimes, we measured above- and belowground traits, growth, and reproductive allocation for four annual and four perennial species from a coastal sage scrub community in California under conditions of 50%, 100%, and 150% ambient precipitation. Across water treatments, annual species displayed morphological trait values consistent with high rates of resource acquisition (e.g., low leaf mass per area, low root tissue density, high specific root length), and aboveground measures of resource acquisition (including photosynthetic rate and leaf N concentration) were positively associated with plant performance (reproductive allocation). Results from a structural equation model demonstrated that leaf traits explained 38% of the variation in reproductive allocation across the water gradient in annual species, while root traits accounted for only 6%. Although roots play a critical role in water uptake, more work is needed to understand the mechanisms by which root trait variation can influence performance in water-limited environments. Perennial species showed lower trait plasticity than annuals across the water gradient and were more variable as a group in terms of trait-performance relationships, indicating that species rely on different functional strategies to respond to drought. Our finding that species identity drives much of the variation in trait values and trait-performance relationships across a water gradient may simplify efforts to model ecological processes, such as productivity, that are potentially influenced by environmentally induced shifts in trait values.

The transcriptomic landscapes of rice cultivars with diverse root system architectures grown in upland field conditions.

Root system architecture affects plant drought resistance and other key agronomic traits such as lodging. However, although phenotypic and genomic variation has been extensively analyzed, few field studies have integrated phenotypic and transcriptomic information, particularly for below-ground traits such as root system architecture. Here, we report the phenotypic and transcriptomic landscape of 61 rice (Oryza sativa) accessions with highly diverse below-ground traits grown in an upland field. We found that four principal components explained the phenotypic variation and that accessions could be classified into four subpopulations (indica, aus, japonica and admixed) based on their tiller numbers and crown root diameters. Transcriptome analysis revealed that differentially expressed genes associated with specific subpopulations were enriched with stress response-related genes, suggesting that subpopulations have distinct stress response mechanisms. Root growth was negatively correlated with auxin-inducible genes, suggesting an association between auxin signaling and upland field conditions. A negative correlation between crown root diameter and stress response-related genes suggested that thicker crown root diameter is associated with resistance to mild drought stress. Finally, co-expression network analysis implemented with DNA affinity purification followed by sequencing analysis identified phytohormone signaling networks and key transcription factors negatively regulating crown root diameter. Our datasets provide a useful resource for understanding the genomic and transcriptomic basis of phenotypic variation under upland field conditions.

Do Invasive Earthworms Affect the Functional Traits of Native Plants?

As ecosystem engineers, invasive earthworms are one of the main drivers of plant community changes in North American forests previously devoid of earthworms. One explanation for these community changes is the effects of earthworms on the reproduction, recruitment, and development of plant species. However, few studies have investigated functional trait responses of native plants to earthworm invasion to explain the mechanisms underlying community changes. In a mesocosm (Ecotron) experiment, we set up a plant community composed of two herb and two grass species commonly found in northern North American forests under two earthworm treatments (presence vs. absence). We measured earthworm effects on above- and belowground plant biomass and functional traits after 3 months of experiment. Our results showed that earthworm presence did not significantly affect plant community biomass and cover. Furthermore, only four out of the fifteen above- and belowground traits measured were affected by earthworm presence. While some traits, such as the production of ramets, the carbon and nitrogen content of leaves, responded similarly between and within functional groups in the presence or absence of earthworms, we observed opposite responses for other traits, such as height, specific leaf area, and root length within some functional groups in the presence of earthworms. Plant trait responses were thus species-specific, although the two grass species showed a more pronounced response to earthworm presence with changes in their leaf traits than herb species. Overall, earthworms affected some functional traits related to resource uptake abilities of plants and thus could change plant competition outcomes over time, which could be an explanation of plant community changes observed in invaded ecosystems.

Carbohydrate storage in herbs: the forgotten functional dimension of the plant economic spectrum.

Although the plant economic spectrum seeks to explain resource allocation strategies, carbohydrate storage is often omitted. Belowground storage organs are the centre of herb perennation, yet little is known about the role of their turnover, anatomy and carbohydrate storage in relation to the aboveground economic spectrum. We collected aboveground traits associated with the economic spectrum, storage organ turnover traits, storage organ inner structure traits and storage carbohydrate concentrations for ~80 temperate meadow species. The suites of belowground traits were largely independent of one another, but there was significant correlation of the aboveground traits with both inner structure and storage carbohydrates. Anatomical traits diverged according to leaf nitrogen concentration on the one hand and vessel area and dry matter content on the other; carbohydrates separated along gradients of leaf nitrogen concentration and plant height. Contrary to our expectations, aboveground traits and not storage organ turnover were correlated with anatomy and storage carbohydrates. Belowground traits associated with the aboveground economic spectrum also did not fall clearly within the fast-slow economic continuum, thus indicating the presence of a more complicated economic space. Our study implies that the generally overlooked role of storage within the plant economic spectrum represents an important dimension of plant strategy.