Decomposition of mixed residues is common in many ecosystems, with residues from different species or above- and below-ground residues from the same species. Although decomposition of litter mixtures has been extensively studied, little is known about the changes in microbial biomass carbon (C) and available nitrogen (N) in the early stages of decomposition of mixtures of shoots and roots. An incubation experiment was carried out in a sandy clay loam with shoot and root residues of two grasses, annual barley (Hordeum vulgare L.), and perennial Stipa sp., added separately or as mixtures. Soil respiration was measured continuously, and soil microbial biomass C, extractable C and available N were measured by destructive sampling on days 0, 3, 6, 9, 12 and 18. Cumulative respiration and microbial biomass C concentration were higher with barley shoots alone or in mixtures than with Stipa residues alone. In the mixture of Stipa shoots and roots, which had similar decomposition rates when incubated individually, the measured cumulative respiration was greater than the expected value (average of the cumulative respiration of the individual residues), but this did not result in greater microbial biomass or changes in available N concentration compared with the individual residues. Cumulative respiration of barley shoots alone was higher than of barley root and Stipa shoot incubated individually. In the mixtures of barley shoots with barley roots or Stipa shoots, the measured cumulative respiration was either lower than the expected value or similar. Compared with barley shoots alone, microbial biomass C concentrations in the mixtures were generally lower in the first 3 days. It is concluded that mixing of residues with similar decomposition rates can stimulate microbial activity (respiration) but has little effect on microbial growth or concentrations of available N. Further, our findings provide information about extractable C and N dynamics during the early stages of decomposition of individual residue and residue mixtures.