AbstractTo clarify the formation process of the back‐arc basin in the Japan Sea, which is located next to the northwestern Pacific, a seismic survey using ocean bottom seismographs and an air gun array was undertaken in areas from the northern Yamato Basin to the coast of the northeastern Japan Island Arc off Awa‐shima Island. The crust beneath the northern Yamato Basin off Awa‐shima Island is approximately 16 km thick. The upper and lower crusts are, respectively, about 5 km thick with a steep velocity gradient and about 10 km thick with a gentle velocity gradient. In the basin, there are very few units with P wave velocity of 5.4–6.0 km/s, corresponding to the continental upper crust. The crustal structure of the northern Yamato Basin has characteristics of thicker oceanic crust. The high‐velocity lowermost crust in the northern Yamato Basin with 7.2–7.4 km/s might show melt formed by a slightly high mantle temperature during the opening of the basin. However, the crust beneath the areas from the Sado Ridge to the coast, which is approximately 25–26 km thick, is slightly thinner than that of the continental crust and island arc crust. The crustal structure beneath this area is inferred to be a rifted continental and/or a rifted island arc crust.