Basal Nodes Research Articles

Global decline of bumblebees is phylogenetically structured and inversely related to species range size and pathogen incidence.

Conservation biology can profit greatly from incorporating a phylogenetic perspective into analyses of patterns and drivers of species extinction risk. We applied such an approach to analyse patterns of bumblebee (Bombus) decline. We assembled a database representing approximately 43% of the circa 260 globally known species, which included species extinction risk assessments following the International Union fo Conservation of Nature Red List categories and criteria, and information on species traits presumably associated with bumblebee decline. We quantified the strength of phylogenetic signal in decline, range size, tongue length and parasite presence. Overall, about one-third of the assessed bumblebees are declining and declining species are not randomly distributed across the Bombus phylogeny. Susceptible species were over-represented in the subgenus Thoracobombus (approx. 64%) and under-represented in the subgenus Pyrobombus (approx. 6%). Phylogenetic logistic regressions revealed that species with small geographical ranges and those in which none of three internal parasites were reported (i.e. Crithidia bombi, Nosema spp. or Locustacarus buchneri) were particularly vulnerable. Bumblebee evolutionary history will be deeply eroded if most species from threatened clades, particularly those stemming from basal nodes, become finally extinct. The habitat of species with restricted distribution should be protected and the importance of pathogen tolerance/resistance as mechanisms to deal with pathogens needs urgent research.

Spur Pruning May Be a Viable Option for Oregon Pinot noir Producers Despite Industry Fears of Lower Productivity

Summary Goals: Winegrape production is more costly in Oregon than in other US growing regions, and industry faces rising production costs and labor concerns. Growers are considering ways to reduce labor and introduce mechanization. Spur pruning requires less labor and is more readily mechanized than cane pruning; however, the majority of Oregon growers use cane pruning. We conducted industry surveys and interviews to understand why cane pruning is preferred and determine potential barriers to adopting spur pruning. We conducted a vineyard case study to quantify fruitfulness and yield of cane- and spur-pruned vines to determine the potential for spur pruning in Pinot noir. Key Findings: The majority of survey respondents (76%) primarily used cane pruning on cool climate cultivars because they believe that spur pruning reduces yields and fruit quality and increases fungal and mite pests. A total of 35% believed that spur pruning reduces yield due to vines having unfruitful basal buds. Interviews of Pinot noir growers who use both spur and cane pruning revealed that spur pruning could achieve desired yields, while reducing production costs and labor dependency. Their observations did not support survey respondent concerns about severely reduced yields, fruit quality, and increased mites or diseases. The Pinot noir vineyard case study revealed that cane and spur pruning led to similar yields, cluster size, and fruit ripeness. Data from spur-pruned Pinot noir vines showed that shoots arising from basal, first, and second buds were fruitful. Impact and Significance: Industry perception and lack of experience with spur pruning is preventing adoption. Expectation of low yields is based on industry hearsay, not direct experience. Concerns that spur pruning lowers quality may be derived from mechanization research from regions that focus on quantity, not quality. However, grower interviews and field data show that Pinot noir is fruitful at basal nodes and can be spur pruned without limiting yield or quality based on Oregon standards. Converting to spur pruning reduced pruning cost, and research/demonstration projects are needed to help small, quality-focused industries make necessary adaptations to their production systems.

OsHKT1;5 mediates Na+ exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.

Salt tolerance quantitative trait loci analysis of rice has revealed that the SKC1 locus, which is involved in a higher K+ /Na+ ratio in shoots, corresponds to the OsHKT1;5 gene encoding a Na+ -selective transporter. However, physiological roles of OsHKT1;5 in rice exposed to salt stress remain elusive, and no OsHKT1;5 gene disruption mutants have been characterized to date. In this study, we dissected two independent T-DNA insertional OsHKT1;5 mutants. Measurements of ion contents in tissues and 22 Na+ tracer imaging experiments showed that loss-of-function of OsHKT1;5 in salt-stressed rice roots triggers massive Na+ accumulation in shoots. Salt stress-induced increases in the OsHKT1;5 transcript were observed in roots and basal stems, including basal nodes. Immuno-staining using an anti-OsHKT1;5 peptide antibody indicated that OsHKT1;5 is localized in cells adjacent to the xylem in roots. Additionally, direct introduction of 22 Na+ tracer to leaf sheaths also demonstrated the involvement of OsHKT1;5 in xylem Na+ unloading in leaf sheaths. Furthermore, OsHKT1;5 was indicated to be present in the plasma membrane and found to localize also in the phloem of diffuse vascular bundles in basal nodes. Together with the characteristic 22 Na+ allocation in the blade of the developing immature leaf in the mutants, these results suggest a novel function of OsHKT1;5 in mediating Na+ exclusion in the phloem to prevent Na+ transfer to young leaf blades. Our findings further demonstrate that the function of OsHKT1;5 is crucial over growth stages of rice, including the protection of the next generation seeds as well as of vital leaf blades under salt stress.

More on the Best Evolutionary Rate for Phylogenetic Analysis.

The accumulation of genome-scale molecular data sets for nonmodel taxa brings us ever closer to resolving the tree of life of all living organisms. However, despite the depth of data available, a number of studies that each used thousands of genes have reported conflicting results. The focus of phylogenomic projects must thus shift to more careful experimental design. Even though we still have a limited understanding of what are the best predictors of the phylogenetic informativeness of a gene, there is wide agreement that one key factor is its evolutionary rate; but there is no consensus as to whether the rates derived as optimal in various analytical, empirical, and simulation approaches have any general applicability. We here use simulations to infer optimal rates in a set of realistic phylogenetic scenarios with varying tree sizes, numbers of terminals, and tree shapes. Furthermore, we study the relationship between the optimal rate and rate variation among sites and among lineages. Finally, we examine how well the predictions made by a range of experimental design methods correlate with the observed performance in our simulations.We find that the optimal level of divergence is surprisingly robust to differences in taxon sampling and even to among-site and among-lineage rate variation as often encountered in empirical data sets. This finding encourages the use of methods that rely on a single optimal rate to predict a gene’s utility. Focusing on correct recovery either of the most basal node in the phylogeny or of the entire topology, the optimal rate is about 0.45 substitutions from root to tip in average Yule trees and about 0.2 in difficult trees with short basal and long-apical branches, but all rates leading to divergence levels between about 0.1 and 0.5 perform reasonably well.Testing the performance of six methods that can be used to predict a gene’s utility against our simulation results, we find that the probability of resolution, signal-noise analysis, and Fisher information are good predictors of phylogenetic informativeness, but they require specification of at least part of a model tree. Likelihood quartet mapping also shows very good performance but only requires sequence alignments and is thus applicable without making assumptions about the phylogeny. Despite them being the most commonly used methods for experimental design, geometric quartet mapping and the integration of phylogenetic informativeness curves perform rather poorly in our comparison. Instead of derived predictors of phylogenetic informativeness, we suggest that the number of sites in a gene that evolve at near-optimal rates (as inferred here) could be used directly to prioritize genes for phylogenetic inference. In combination with measures of model fit, especially with respect to compositional biases and among-site and among-lineage rate variation, such an approach has the potential to greatly improve marker choice and should be tested on empirical data.

The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

BackgroundThe structure of haplogroup H reveals significant differences between the western and eastern edges of the Mediterranean, as well as between the northern and southern regions. Human populations along the westernmost Mediterranean coasts, which were settled by individuals from two continents separated by a relatively narrow body of water, show the highest frequencies of mitochondrial haplogroup H. These characteristics permit the analysis of ancient migrations between both shores, which may have occurred via primitive sea crafts and early seafaring. We collected a sample of 750 autochthonous people from the southern Iberian Peninsula (Andalusians from Huelva and Granada provinces). We performed a high-resolution analysis of haplogroup H by control region sequencing and coding SNP screening of the 337 individuals harboring this maternal marker. Our results were compared with those of a wide panel of populations, including individuals from Iberia, the Maghreb, and other regions around the Mediterranean, collected from the literature.ResultsBoth Andalusian subpopulations showed a typical western European profile for the internal composition of clade H, but eastern Andalusians from Granada also revealed interesting traces from the eastern Mediterranean. The basal nodes of the most frequent H sub-haplogroups, H1 and H3, harbored many individuals of Iberian and Maghrebian origins. Derived haplotypes were found in both regions; haplotypes were shared far more frequently between Andalusia and Morocco than between Andalusia and the rest of the Maghreb. These and previous results indicate intense, ancient and sustained contact among populations on both sides of the Mediterranean.ConclusionsOur genetic data on mtDNA diversity, combined with corresponding archaeological similarities, provide support for arguments favoring prehistoric bonds with a genetic legacy traceable in extant populations. Furthermore, the results presented here indicate that the Strait of Gibraltar and the adjacent Alboran Sea, which have often been assumed to be an insurmountable geographic barrier in prehistory, served as a frequently traveled route between continents.

A Magnesium Transporter OsMGT1 Plays a Critical Role in Salt Tolerance in Rice.

Salt stress is one of the major factors limiting rice (Oryza sativa) production globally. Although several transporters involved in salt tolerance have been identified in rice, the mechanisms regulating their transport activity are still poorly understood. Here, we show evidence that a rice Mg transporter OsMGT1 is required for salt tolerance probably by regulating transport activity of OsHKT1;5, a key transporter for the removal of Na+ from the xylem sap at the root mature zone. Knockout of OsMGT1 did not affect total Na uptake, but increased Na concentration in the shoots and xylem sap, resulting in a significant increase in salt sensitivity at low external Mg2+ concentration (20-200 μm). However, such differences were abolished at a higher Mg2+ concentration (2 mm), although the total Na uptake was not altered. OsMGT1 was expressed in both the roots and shoots, but only that in the roots was moderately up-regulated by salt stress. Spatial expression analysis revealed that OsMGT1 was expressed in all root cells of the root tips but was highly expressed in the pericycle of root mature zone. OsMGT1 was also expressed in the phloem region of basal node, leaf blade, and sheath. When expressed in Xenopus laevis oocytes, the transport activity of OsHKT1;5 was enhanced by elevating external Mg2+ concentration. Furthermore, knockout of OsHKT1;5 in osmgt1 mutant background did not further increase its salt sensitivity. Taken together, our results suggest that Mg2+ transported by OsMGT1 in the root mature zone is required for enhancing OsHKT1;5 activity, thereby restricting Na accumulation to the shoots.

Detecting climatically driven phylogenetic and morphological divergence among spruce (<i>Picea</i>) species worldwide

Abstract. This study aimed to elucidate the relationship between climate and the phylogenetic and morphological divergence of spruces (Picea) worldwide. Climatic and georeferenced data were collected from a total of 3388 sites distributed within the global domain of spruce species. A phylogenetic tree and a morphological tree for the global spruces were reconstructed based on DNA sequences and morphological characteristics. Spatial evolutionary and ecological vicariance analysis (SEEVA) was used to detect the ecological divergence among spruces. A divergence index (D) with (0, 1) scaling was calculated for each climatic factor at each node for both trees. The annual mean values, extreme values and annual range of the climatic variables were among the major determinants for spruce divergence. The ecological divergence was significant (P < 0. 001) for 185 of the 279 comparisons at 31 nodes in the phylogenetic tree, as well as for 196 of the 288 comparisons at 32 nodes in the morphological tree. Temperature parameters and precipitation parameters tended to be the main driving factors for the primary divergences of spruce phylogeny and morphology, respectively. Generally, the maximum D of the climatic variables was smaller in the basal nodes than in the remaining nodes. Notably, the primary divergence of morphology and phylogeny among the investigated spruces tended to be driven by different selective pressures. Given the climate scenario of severe and widespread drought over land areas in the next 30–90 years, our findings shed light on the prediction of spruce distribution under future climate change.

Carbon Partitioning in Potted Post-V eraison Vitis vinifera L. CV. Riesling Vines: Effect of Dormant Cane Length

To investigate the movement of photoassimilates within a wine canopy, potted Vitis vinifera L. cv. Riesling grapevines were pruned to two different dormant cane lengths of 100 mm and 900 mm. Shoots on these canes were vertically trained with one non-fruitbearing shoot growing from the apical node and one fruit-bearing shoot growing from the basal node for each treatment .. Known quantities of 1'C02 were loaded into the source leaf located at leaf node position 10 on the apical shoot. Bi-directional translocation of 14C photoassimilates was demonstrated. Minimal translocation of 1'C photoassimilates from source leaves on non-fruit-bearing shoots was directed towards the clusters located on the lower shoot. The non-fruit-bearing shoots are, however, contributing to the carbohydrate reserves in the roots, where an allocation of over 50% of the exported C photoassimilates to the roots was demonstrated in both treatments.

Descriptions and phylogenetic relationships of four new species and a new name of Habenaria (Orchidaceae) from the cerrado and campos rupestres of Brazil

Four new orchid species and one variety from the cerrado and campos rupestres of central and south-eastern Brazil are described and illustrated: Habenaria brachydactyla, H. irwiniana, H. minuta, H. pansarinii, and H. pansarinii var. minuscula. Habenaria campylogyna is proposed as a new name for the illegitimate H. humilis Cogniaux. The five species differ from other Neotropical taxa by being small, slender plants with linear leaves concentrated at the base of the stem. Molecular phylogenetic analyses based on nuclear and plastid DNA sequences revealed that they are not closely related, and do not belong to any of the previously identified Neotropical subclades. All of the new taxa were recovered in isolated positions, branching from basal nodes of larger subclades, suggesting that these morphological characters represent plesiomorphic traits in the Neotropical clade. Habenaria brachydactyla is genetically distinct and represents an early lineage of the Neotropical Habenaria clade. All taxa are considered threatened because of their small numbers of populations with few individuals and/or restricted distributions. Detailed descriptions, photographs, illustrations, notes, and a key to the species are presented.

Museum archives revisited: Central Asiatic hawkmoths reveal exceptionally high late Pliocene species diversification (Lepidoptera, Sphingidae)

Three high‐elevation Hyles species of Central Asia have proven difficult to sample, and thus, only a limited number of specimens are available for study. Ancient DNA techniques were applied to sequence two mitochondrial genes from ‘historic’ museum specimens of Hyles gallii, Hyles renneri and Hyles salangensis to elucidate the phylogenetic relationships of these species. This approach enabled us to include the holotypes and paratypes. The status of H. salangensis as a species endemic to a mountain range north of Kabul in Afghanistan is confirmed by this study. It is most closely related to Hyles nicaea and H. gallii, and quite distant from the clade comprising the species from Hyles vespertilio to Hyles tithymali, despite this group and H. salangensis both completely lacking an arolium on the pretarsus. Our results show that the samples assigned to H. renneri and Hyles livornica tatsienluica are conspecific and so we reinstate Hyles tatsienluica stat. nov. as the valid name for this species and synonymize H. renneri syn. nov. with it. This study shows that the distribution range postulated for H. tatsienluica extends from Nepal well into the mountains of south‐western China. The distribution ranges of H. livornica and H. tatsienluica overlap. The study confirms the previously proposed synonymies of Hyles nepalensis, Hyles gallii intermedia and Hyles gallii tibetanica with H. gallii. Extensive species sampling (over 80% of Hyles species) in this study allowed additional analyses. The dated phylogeny reveals the global Hyles hawkmoth radiation to be much more recent than previously thought: it began in the Late Miocene and culminated in a Pleistocene burst of diversification in the Northern Hemisphere. Ancestral ranges of basal nodes were reconstructed as highly equivocal, but the Neotropics has the highest probability in the two oldest nodes. Although the origins of the Madagascan and Australian species also remain ambiguous, a large crown clade of fifteen species was reconstructed to have originated in the Palaearctic. The wide distribution ranges of the two migratory species, H. livornica and H. gallii, appear to blur any traces of the biogeographic origin of the clades containing these species. Specialization in larval host plant use onto particular plant families from the ancestral condition ‘polyphagous’ may have led to an increased rate of speciation and phylogenetic diversification in three subgroups of Hyles (the Hawaiian clade, the Hyles centralasiae group and the Hyles euphorbiae complex).

Vegetative propagation capacity of invasive alligator weed through small stolon fragments under different treatments

The ability to propagate via small diaspores is crucial for the invasion of a clone plant that does not reproduce sexually in its introduced range. We investigated the effects of node and internode adjacent mode, fragment type, burial orientation and position of the node in relation to the soil surface on the sprouting and growth of alligator weed (Alternanthera philoxeroides (Martius) Griseb.). All the factors had effects and interaction effects on the sprouting rate and growth. As a whole fragment in all treatments, the fragments with basal node buried upward on the soil surface, exhibited the best above-ground growth and root growth. The one-node fragment with basal node buried downward above the soil surface and upward under the soil surface significantly decreased the above-ground growth and root growth compared to that of the two-node fragment. Therefore, the one-node fragments were more affected by environmental conditions than the two-node fragments. The results indicated that reducing the number of nodes of a fragment and burying the node under the soil or orienting it downward above the soil surface could be applied to control the invasion of alligator weed.

The third glume phenotype is associated with rachilla branching in the spikes of tetraploid wheat (Triticum L.)

We investigated the new inflorescence architectural character “three glumes” and a new status of ramification in tetraploid wheat. Using 9 tetraploid accessions with “turgidum type of branching”, the segregation of branched spike and the third glume indicated the complete linkage of genes for both phenotypes. The rachilla were elongated and bore florets at basal nodes while bearing spikelets at the apical nodes in T. durum Desf. TRI 9644 and T. turgidum L. PI 67339. The phenotype was different from “sham-ramification” in Triticum jakubzineri Udacz. et Schachm., with florets at basal and apical nodes of elongated spikelet rachilla. We confirmed a new status of ramification, “false-true ramification”. It was considered that the “false-true ramification” was determined by the shr2 gene in the long arm of chromosome 2A because the ramification of PI 67339 and TRI 9644 was supposed to be allelic. The segregation of “sham-ramification” and the third glume also indicated the complete linkage of genes for both phenotypes. Thus we concluded that the presence of third glume phenotype is associated with rachis and rachilla branching in the spikes of tetraploid wheat. The present study confirmed the existence of three distinct types of spike ramification, whose classification is not entirely unified: (a) “true ramification”—“branched spike”—“genuine branching”—“turgidum type of branching”, (b) “false ramification”—“pseudo-branched spike”—“sham ramification”—“vavilovii type of branching” and (c) “false-true ramification”.

Non-trophic interactions in deserts: Facilitation, interference, and an endangered lizard species

Research on plant–animal interactions has been focused on direct consumer interactions (i.e. plants as resources), but non-trophic interactions including providing shelter or interference with movement can also affect the fine-scale distribution of animals. In particular, non-trophic interactions that are positive could support threatened animal populations. Positive interactions have been used in the restoration of plant communities, but have not yet been extended to the management of animal habitat. In this study, we tested the hypothesis that non-trophic interactions influence the occurrence of an endangered lizard species in an arid shrub-annual system. At a location known to have a population of blunt-nosed leopard lizards (Gambelia sila), we geotagged 700 shrubs, measured shrub morphometric traits, collected biomass samples, and surveyed for lizard presence using scat detection dogs over two years. Relative to 2014, in 2013 plant productivity was high and lizard scats were found more frequently in areas with low invasive grass cover (i.e. residual dry matter, RDM). In 2014, plant productivity was low because of an extreme drought year, and lizard scats were more frequently observed under shrub canopies, particularly those with relatively dense cover. These findings support the novel theory that positive non-trophic interactions are a critical form of plant–animal interactions in addition to consumption. Dominant shrubs can act as a foundation species by functioning as a basal node in structuring both plant and animal communities through a network of interactions. Managing dominant plants, in addition to habitat, is therefore important for conserving animal species in arid ecosystems.

A new species of <i>Laportea</i> Gaudich. (Urticaceae) from Himalaya, India

A new herb species of Urticaceae, Laportea stolonifera B. L. Bhellum & B. Singh, is described and illustrated from a restricted habitat of subtropical forest of Northwest Himalaya, India. The new taxon is vegetatively similar to Laportea ovalifolia (Schumach. & Thonn.) Chew, an African endemic species and Laportea interrupta (L.) Chew but differs by phenotypic characters such as cordate leaves, unbranched inflorescence, stem hairs types, linear cystoliths with varying shapes, and presence of 2 to 3 stolons arising from basal node of stems. The similarity with the allied species is due to similar habitats occupancy, but isolated geographically from each other. Laportea stolonifera is assessed as Endangered, and the population data, ecological parameters and associated taxa are also presented. A key to the genus Laportea is prepared for India has been presented in the text.Bangladesh J. Plant Taxon. 23(2): 189-194, 2016 (December)

Changes in functional organization and white matter integrity in the connectome in Parkinson's disease.

Parkinson's disease (PD) leads to dysfunction in multiple cortico-striatal circuits. The neurodegeneration has also been associated with impaired white matter integrity. This structural and functional “disconnection” in PD needs further characterization.We investigated the structural and functional organization of the PD whole brain connectome consisting of 200 nodes using diffusion tensor imaging and resting-state functional MRI, respectively. Data from 20 non-demented PD patients on dopaminergic medication and 20 matched controls were analyzed using graph theory-based methods. We focused on node strength, clustering coefficient, and local efficiency as measures of local network properties; and network modularity as a measure of information flow.PD patients showed reduced white matter connectivity in frontoparietal-striatal nodes compared to controls, but no change in modular organization of the white matter tracts. PD group also showed reduction in functional local network metrics in many nodes distributed across the connectome. There was also decreased functional modularity in the core cognitive networks including the default mode and dorsal attention networks, and sensorimotor network, as well as a lack of modular distinction in the orbitofrontal and basal ganglia nodes in the PD group compared to controls.Our results suggest that despite subtle white matter connectivity changes, the overall structural organization of the PD connectome remains robust at relatively early disease stages. However, there is a breakdown in the functional modular organization of the PD connectome.

Pinching Ornamental Sunflowers Increases Cut Stem Yield and Reduces Flower Size

Most sunflower cultivars (Helianthus annuus) grown as cut flowers produce single stems and do not form branches. If pinched (i.e., apical meristem removed) in the seedling stage, plants form branches from basal nodes. In four experiments conducted under field conditions, pinching seedlings increased the number of marketable sunflower stems per plant 2.6 to 4.6 times, but the flowers formed were reduced in diameter by 43%, and flowering was delayed by 1 week to 10 days. Leaving six instead of four basal nodes after pinching only increased stem yield slightly in 2005 but not in 2006. Increasing the space available per plant from 9 × 9 to 12 × 12 inches increased flower diameter of pinched and control plants from 7 to 7.9 cm, but the resulting lower yield per unit area reduced overall value. In three out of four experiments, ‘Procut Orange’ produced more stems after pinching than ‘Sunrich Orange’. Pinching nonbranching sunflowers is a promising technique, increasing yield by a factor of three, and the value of the harvested flowers by 82%.

Phylogenetic distribution of regeneration and asexual reproduction in Annelida: regeneration is ancestral and fission evolves in regenerative clades

AbstractRegeneration, the ability to replace lost body structures, and agametic asexual reproduction, such as fission and budding, are post‐embryonic developmental capabilities widely distributed yet highly variable across animals. Regeneration capabilities vary dramatically both within and across phyla, but the evolution of regeneration ability has rarely been reconstructed in an explicitly phylogenetic context. Agametic reproduction appears strongly associated with high regenerative abilities, and there are also extensive developmental similarities between these two processes, suggesting that the two are evolutionarily related. However, the directionality leading to this relationship remains unclear: while it has been proposed that regeneration precedes asexual reproduction, the reverse hypothesis has also been put forward. Here, we use phylogenetically explicit methods to reconstruct broad patterns of regeneration evolution and formally test these hypotheses about the evolution of fission in the phylum Annelida (segmented worms). We compiled from the literature a large dataset of information on anterior regeneration, posterior regeneration, and fission abilities for 401 species and mapped this information onto a phylogenetic tree based on recent molecular studies. We used Markovian maximum likelihood and Bayesian MCMC methods to evaluate different models for the evolution of regeneration and fission and to estimate the likelihood of each of these traits being present at each node of the tree. Our results strongly support anterior and posterior regeneration ability being present at the basal node of the annelid tree and being lost 18 and 5 times, respectively, but never regained. By contrast, the ability to fission is reconstructed as being absent at the basal node and being gained at least 19 times, with several possible losses. Models assuming independent evolution of regeneration and fission yield significantly lower likelihoods. Our findings suggest that anterior and posterior regeneration are ancestral for Annelida and are consistent with the hypothesis that regenerative ability is required to evolve fission.

Neuromuscular study of early branching Diuronotus aspetos (Paucitubulatina) yields insights into the evolution of organs systems in Gastrotricha.

BackgroundDiuronotus is one of the most recently described genera of Paucitubulatina, one of the three major clades in Gastrotricha. Its morphology suggests that Diuronotus is an early branch of Paucitubulatina, making it a key taxon for understanding the evolution of this morphologically understudied group. Here we test its phylogenetic position employing molecular data, and provide detailed descriptions of the muscular, nervous, and ciliary systems of Diuronotus aspetos, using immunohistochemistry and confocal laser scanning microscopy.ResultsWe confirm the proposed position of D. aspetos within Muselliferidae, and find this family to be the sister group to Xenotrichulidae. The muscular system, revealed by F-actin staining, shows a simple, but unique organization of the trunk musculature with a reduction to three pairs of longitudinal muscles and addition of up to five pairs of dorso-ventral muscles, versus the six longitudinal and two dorso-ventral pairs found in most Paucitubulatina. Using acetylated α-tubulin immunoreactivity, we describe the pharynx in detail, including new nervous structures, two pairs of sensory cilia, and a unique canal system. The central nervous system, as revealed by immunohistochemistry, shows the general pattern of Gastrotricha having a bilobed brain and a pair of ventro-longitudinal nerve cords. However, in addition are found an anterior nerve ring, several anterior longitudinal nerves, and four ventral commissures (pharyngeal, trunk, pre-anal, and terminal). Two pairs of protonephridia are documented, while other Paucitubulatina have one. Moreover, the precise arrangement of multiciliated cells is unraveled, yielding a pattern of possibly systematic importance.ConclusionSeveral neural structures of Diuronotus resemble those found in Xenotrichula (Xenotrichulidae) and may constitute new apomorphies of Paucitubulatina, or even Gastrotricha. In order to test these new evolutionary hypotheses, comparable morphological data from other understudied gastrotrich branches and a better resolution of the basal nodes of the gastrotrich phylogeny are warranted. Nonetheless, the present study offers new insights into the evolution of organ systems and systematic importance of so-far neglected characters in Gastrotricha.

Depth as a driver of evolution in the deep sea: Insights from grenadiers (Gadiformes: Macrouridae) of the genus Coryphaenoides

Here we consider the role of depth as a driver of evolution in a genus of deep-sea fishes. We provide a phylogeny for the genus Coryphaenoides (Gadiformes: Macrouridae) that represents the breadth of habitat use and distributions for these species. In our consensus phylogeny species found at abyssal depths (>4000m) form a well-supported lineage, which interestingly also includes two non-abyssal species, C. striaturus and C. murrayi, diverging from the basal node of that lineage. Biogeographic analyses suggest the genus may have originated in the Southern and Pacific Oceans where contemporary species diversity is highest. The abyssal lineage seems to have arisen secondarily and likely originated in the Southern/Pacific Oceans but diversification of this lineage occurred in the Northern Atlantic Ocean. All abyssal species are found in the North Atlantic with the exception of C. yaquinae in the North Pacific and C. filicauda in the Southern Ocean. Abyssal species tend to have broad depth ranges and wide distributions, indicating that the stability of the deep oceans and the ability to live across wide depths may promote population connectivity and facilitate large ranges. We also confirm that morphologically defined subgenera do not agree with our phylogeny and that the Giant grenadier (formerly Albatrossia pectoralis) belongs to Coryphaenoides, indicating that a taxonomic revision of the genus is needed. We discuss the implications of our findings for understanding the radiation and diversification of this genus, and the likely role of adaptation to the abyss.

Grasses suppress shoot-borne roots to conserve water during drought

Many important crops are members of the Poaceae family, which develop root systems characterized by a high degree of root initiation from the belowground basal nodes of the shoot, termed the crown. Although this postembryonic shoot-borne root system represents the major conduit for water uptake, little is known about the effect of water availability on its development. Here we demonstrate that in the model C4 grass Setaria viridis, the crown locally senses water availability and suppresses postemergence crown root growth under a water deficit. This response was observed in field and growth room environments and in all grass species tested. Luminescence-based imaging of root systems grown in soil-like media revealed a shift in root growth from crown-derived to primary root-derived branches, suggesting that primary root-dominated architecture can be induced in S. viridis under certain stress conditions. Crown roots of Zea mays and Setaria italica, domesticated relatives of teosinte and S. viridis, respectively, show reduced sensitivity to water deficit, suggesting that this response might have been influenced by human selection. Enhanced water status of maize mutants lacking crown roots suggests that under a water deficit, stronger suppression of crown roots actually may benefit crop productivity.