Event Abstract Back to Event The intrinsic and extrinsic connectome of subregions of the basal ganglia Oliver Schmitt1*, Peter Eipert1, Konstanze Philipp1, Richard Kettlitz1 and Andreas Wree1 1 Department of Anatomy, Uni Rostock, Germany The motoric part of the basal ganglia (BG) network in the rat receives input from the primary motor cortex and consists of the caudate putamen complex, lateral and medial globus pallidus, substantia nigra, subthalamic nucleus and some thalamic nuclei (parafascicular, ventromedial, mediodorsal, ventrolateral, lateral habenula). Most of these classical components are directly (monosynaptically) interconnected. In a metastudy of 2200 tract-tracing publications of the rat central nervous system much more regions were found that are directly connected to functionally important regions of the motoric BG. In this contribution extrinsic and intrinsic connectivity of the BG has been analyzed. Using conventional global and local graph evaluation methods, new approaches of vulnerability and pathway analysis as well as techniques of visual analytics revealed new patterns of reciprocal connections. The unilateral intrinsic BG consists of 14 nodes which are connected by 122 edges resulting in a line density of 67.033% and an average cluster coefficient of 0.735. The average path length is 1.335. It was found that the accumbens nucleus has most ipsilateral and contralateral inputs while the lateral agranular prefrontal cortex has most ipsi- and contralateral outputs. The caudate putamen complex has the largest eigenvector centrality and the lowest Shapley rate. This indicates its importance for the intrinsic network structure of the BG. The substantia nigra pars compacta has a relative high rank with regard to vulnerability, however, the substantia nigra reticular part and the medial globus pallidus are more important to preserve network structure following removal of these nuclei. Keywords: computational neuroscience Conference: 5th INCF Congress of Neuroinformatics, Munich, Germany, 10 Sep - 12 Sep, 2012. Presentation Type: Poster Topic: Neuroinformatics Citation: Schmitt O, Eipert P, Philipp K, Kettlitz R and Wree A (2013). The intrinsic and extrinsic connectome of subregions of the basal ganglia. Front. Neuroinform. Conference Abstract: 5th INCF Congress of Neuroinformatics. doi: 10.3389/conf.fninf.2013.08.00016 Copyright: The abstracts in this collection have not been subject to any Frontiers peer review or checks, and are not endorsed by Frontiers. They are made available through the Frontiers publishing platform as a service to conference organizers and presenters. The copyright in the individual abstracts is owned by the author of each abstract or his/her employer unless otherwise stated. Each abstract, as well as the collection of abstracts, are published under a Creative Commons CC-BY 4.0 (attribution) licence (https://creativecommons.org/licenses/by/4.0/) and may thus be reproduced, translated, adapted and be the subject of derivative works provided the authors and Frontiers are attributed. For Frontiers’ terms and conditions please see https://www.frontiersin.org/legal/terms-and-conditions. Received: 21 Mar 2013; Published Online: 27 Nov 2013. * Correspondence: Dr. Oliver Schmitt, Department of Anatomy, Uni Rostock, Rostock, Germany, schmitt@med.uni-rostock.de Login Required This action requires you to be registered with Frontiers and logged in. To register or login click here. Abstract Info Abstract The Authors in Frontiers Oliver Schmitt Peter Eipert Konstanze Philipp Richard Kettlitz Andreas Wree Google Oliver Schmitt Peter Eipert Konstanze Philipp Richard Kettlitz Andreas Wree Google Scholar Oliver Schmitt Peter Eipert Konstanze Philipp Richard Kettlitz Andreas Wree PubMed Oliver Schmitt Peter Eipert Konstanze Philipp Richard Kettlitz Andreas Wree Related Article in Frontiers Google Scholar PubMed Abstract Close Back to top Javascript is disabled. Please enable Javascript in your browser settings in order to see all the content on this page.