This article presents a method based on linear matrix inequalities (LMIs) for designing a modular feedback control law, whose synthesis guarantees the system stability, while switching to different network topologies. Such stability is achieved by means of a common Lyapunov function to all network admissible configurations. Several mechanisms to relieve the computational burden of this methodology in large-scale systems are also presented. To assess its applicability, the modular controller is tested on a real case study, namely the Barcelona drinking water network (DWN), and its performance is compared with that of other control strategies, showing the effectiveness of the proposed approach.