Bacterium Enterobacter Sp Research Articles

Run-and-tumble kinematics of Enterobacter Sp. SM3.

The recent discovery of the peritrichous, swarm-competent bacterium Enterobacter sp. SM3 has offered a new opportunity to investigate the connection between bacterial swimming and swarming. Here, we report the run-and-tumble behavior of SM3 as planktonic swimming cells and as swarming cells diluted in liquid medium, drawing comparison between the two states. Swimming cells of SM3 run for an average of 0.77s with a speed of approximately 30µm/s before tumbling. Tumbles last for a duration of 0.12s on average and cause changes in direction averaging 69^{∘}. Swimming cells exposed to the common chemoattractant serine in bulk solution suppress the frequency of tumbles in the steady state, lengthening the average run duration and decreasing the average tumble angle. When exposed to aspartate, cells do not demonstrate a notable change in run-and-tumble parameters in the steady state. For swarming cells of SM3, the frequency of tumbles is reduced, with the average run duration being 50% longer on average than that of swimming cells in the same liquid medium. Additionally, the average tumble angle of swarming cells is smaller by 35%. These findings reveal that the newly identified species, SM3, performs run-and-tumble motility similar to other species of peritrichous bacteria such as E. coli, both in the swimming and swarming states. We present a simple mechanical model, which provides a physical understanding of the run-and-tumble behavior of peritrichous bacteria.

Plant Growth-Promoting Bacteria Influence Microbial Community Composition and Metabolic Function to Enhance the Efficiency of Hybrid pennisetum Remediation in Cadmium-Contaminated Soil.

The green and efficient remediation of soil cadmium (Cd) is an urgent task, and plant-microbial joint remediation has become a research hotspot due to its advantages. High-throughput sequencing and metabolomics have technical advantages in analyzing the microbiological mechanism of plant growth-promoting bacteria in improving phytoremediation of soil heavy metal pollution. In this experiment, a pot trial was conducted to investigate the effects of inoculating the plant growth-promoting bacterium Enterobacter sp. VY on the growth and Cd remediation efficiency of the energy plant Hybrid pennisetum. The test strain VY-1 was analyzed using high-throughput sequencing and metabolomics to assess its effects on microbial community composition and metabolic function. The results demonstrated that Enterobacter sp. VY-1 effectively mitigated Cd stress on Hybrid pennisetum, resulting in increased plant biomass, Cd accumulation, and translocation factor, thereby enhancing phytoremediation efficiency. Analysis of soil physical-chemical properties revealed that strain VY-1 could increase soil total nitrogen, total phosphorus, available phosphorus, and available potassium content. Principal coordinate analysis (PCoA) indicated that strain VY-1 significantly influenced bacterial community composition, with Proteobacteria, Firmicutes, Chloroflexi, among others, being the main differential taxa. Redundancy analysis (RDA) revealed that available phosphorus, available potassium, and pH were the primary factors affecting bacterial communities. Partial Least Squares Discriminant Analysis (PLS-DA) demonstrated that strain VY-1 modulated the metabolite profile of Hybrid pennisetum rhizosphere soil, with 27 differential metabolites showing significant differences, including 19 up-regulated and eight down-regulated expressions. These differentially expressed metabolites were primarily involved in metabolism and environmental information processing, encompassing pathways such as glutamine and glutamate metabolism, α-linolenic acid metabolism, pyrimidine metabolism, and purine metabolism. This study utilized 16S rRNA high-throughput sequencing and metabolomics technology to investigate the impact of the plant growth-promoting bacterium Enterobacter sp. VY-1 on the growth and Cd enrichment of Hybrid pennisetum, providing insights into the regulatory role of plant growth-promoting bacteria in microbial community structure and metabolic function, thereby improving the microbiological mechanisms of phytoremediation.

Comprehensive bioremediation effect of phosphorus-mineralized bacterium Enterobacter sp. PMB-5 on cadmium contaminated soil-crop system

Phosphate-mineralizing bacteria (PMBs) have been widely studied by inducing phosphate heavy metal precipitation, but current researches neglect to study their effects on soil-microbe-crop systems on cadmium (Cd) contaminated. Based on this, a strain PMB, Enterobacter sp. PMB-5, was inoculated into Cd contaminated pots to detect soil characteristics, Cd occurrence forms, soil biological activities, plant physiological and biochemical indicators. The results showed that the inoculation of strain PMB-5 significantly increased the available phosphorus content (85.97%−138.64%), Cd-residual fraction (11.04%−29.73%), soil enzyme activities (31.94%−304.63%), plant biomass (6.10%−59.81%), while decreased the state of Cd-HOAc (11.50%−31.17%) and plant bioconcentration factor (23.76%−44.24%). These findings indicated that strain PMB-5 could perform the function of phosphorus solubilization to realize the immobilization of Cd in the complex soil environment. Moreover, SEM-EDS, FTIR, XPS, and XRD analysis revealed that strain PMB-5 does not significantly alter the soil morphology, structure, elemental distribution, and chemical composition, which suggested that remediation of Cd contamination using strain PMB-5 would not further burden the soil. This research implies that PMB-5 could be a safe and effective bioinoculant for remediating Cd-contaminated soils, contributing to the sustainable management of soil health in contaminated environments.

Urease-producing bacteria enhance the adsorption of Cd on organo-Fe hydroxide coprecipitates

Microorganisms, organic carbon, and iron oxides are important active components in soil that control the availability of heavy metals. In the extensive cultivation areas based on wheat–maize rotation, returning corn straw to the field increases the content of dissolved organic carbon (DOC) in the soil, affecting heavy metal adsorption by iron oxides and thereby threatening the safety of wheat. However, the effects and underlying mechanisms of maize straw-derived DOC on Cd adsorption by ferrihydrite (Fh) are unclear, and the effects of functional strains on Cd adsorption by organo-Fe hydroxide coprecipitates (OFCs) need further study. The effect of DOC on the adsorption of Cd by Fh was studied through batch solution adsorption experiments. Moreover, the mechanisms underlying the synergistic adsorption of Cd by the urease-producing bacterium Enterobacter sp. TJ6 and OFC were studied in adsorption experiments via scanning electron microscopy and X-ray photoelectron spectroscopy. The results showed that DOC inhibited the adsorption of Cd by OFC, while strain TJ6 enhanced the adsorption of Cd by OFC. Fe-OH and Fe-O bonds on the surface of Fh were important Cd adsorption sites. DOC affected the adsorption of Cd by Fe-OH and Fe-O, thereby inhibiting the adsorption of Cd by OFC. DOC also served as a reducing agent, reducing Fe2O3 on the surface of OFC to FeO and thus inhibiting OFC adsorption of Cd. The mechanisms by which strain TJ6 enhanced Cd adsorption by OFC included the following: 1) strain TJ6 utilized its own oxidation ability to oxidize FeO on the surface of OFC to Fe2O3, promoting the secondary precipitation of Cd during the redox process and enhancing the Cd adsorption capacity of OFC; and 2) strain TJ6 immobilized Cd2+ through ion exchange between Cd2+ and H+ in surface amino groups. In conclusion, this study has revealed the mechanism by which urease-producing bacteria regulate the adsorption of Cd by OFC and provides a theoretical basis for safe straw return to Cd-polluted farmland. This study also provides technical approaches and bacterial resources for the remediation of heavy metal-contaminated soil under straw return.

Different survival strategies of the phosphate-mineralizing bacterium Enterobacter sp. PMB-5 in response to cadmium stress: Biomineralization, biosorption, and bioaccumulation

The phosphate-mineralizing bacteria (PMBs) has shown great potential as a sustainable solution to support pollution remediation through its induced mineralization capacity. However, few studies have been conducted on the mechanism of cadmium (Cd) tolerance in PMBs. In this study, a PMB strain, Enterobacter sp. PMB-5, screened from Cd-contaminated rhizosphere soil, has high resistance to Cd (540 - 1220 mg/L) and solubilized phosphate (232.08 mg/L). The removal experiments showed that the strain PMB-5 removed 71.69–98.24% and 34.83–76.36% of Cd with and without biomineralization, respectively. The characterization result of SEM, EDS, TEM, XPS and XRD revealed that PMB-5 induced Cd to form amorphous phosphate precipitation through biomineralization and adopted different survival strategies, including biomineralization, bioaccumulation, and biosorption to resistance Cd in the microbial induced phosphate precipitation (MIPP) system and the non-MIPP system, respectively. Moreover, the results of whole genome sequencing and qRT-PCR indicated that phosphorus metabolism genes such as pst, pit, phn, ugp, ppk, etc. and heavy metal tolerance genes (including ion transport, ion efflux, redox, antioxidant stress), such as czcD, zntA, mgtA, mgtC, katE, SOD2, dsbA, cysM, etc. were molecular for the PMB-5 mineralization and Cd tolerance of PMB-5. Together, our findings suggested Enterobacter sp. PMB-5 is a potential target for developing more effective bioinoculants for Cd contamination remediation.

Metabolic insights into how multifunctional microbial consortium enhances atrazine removal and phosphorus uptake at low temperature

Agricultural soils in the black soil region of northeast China often face negative stress due to low temperatures, pesticide contamination, and inadequate nutrient supply. In this study, a new cold-tolerant strain of Peribacillus simplex C1 (C1) was selectively isolated from atrazine contaminated soil. The artificially constructed microbial consortium (CPD) [C1, phosphorus-solubilizing bacterium Enterobacter sp. P1, and atrazine-degrading bacterium Acinetobacter lwoffii DNS32] demonstrated the most effective performance in enhancing atrazine degradation and phosphorus-solubilizing capacity when the initial inoculation ratio of 5:1:2 at 15 °C. CPD enhanced energy-related metabolic pathways and increased choline production to regulate bacterial adaptation to temperature decrease. Additionally, the strains could selectively utilize carbon sources (low molecular weight organic acids) or nitrogen sources (some metabolites of atrazine) provided by each other to enhance growth. Furthermore, strain C1 enhanced membrane fluidity through increased expression of the unsaturated fatty acids. Pot experiments demonstrated that CPD assisted soybean seedlings in resisting dual stresses of low temperature and atrazine contamination by inducing the expression of genes related to photosynthesis, membrane permeability, phosphorus response, and cold tolerance.

Unveiling the performance of a novel alkalizing bacterium Enterobacter sp. LYX-2 in immobilization of available Cd

A novel alkalizing strain Enterobacter sp. LYX-2 that could resist 400 mg/L Cd was isolated from Cd-contaminated soil, which immobilized 96.05% Cd2+ from medium. Cd distribution analysis demonstrated that more than half of the Cd2+ was converted into extracellular precipitated Cd through mobilization of the alkali-producing mechanism by the strain LYX-2, achieving the high immobilization efficiency of Cd2+. Biosorption experiments revealed that strain LYX-2 had superior biosorption capacity of 48.28 mg/g for Cd. Pot experiments with Brassica rapa L. were performed with and without strain LYX-2. Compared to control, 15.92% bioavailable Cd was converted to non-bioavailable Cd and Cd content in aboveground vegetables was decreased by 37.10% with addition of strain LYX-2. Available Cd was mainly immobilized through extracellular precipitation, cell-surface biosorption and intracellular accumulation of strain LYX-2, which was investigated through Cd distribution, Scanning Electron Microscope and Energy-Dispersive X-ray Spectroscopy (SEM-EDS), Fourier Transform Infrared Spectroscopy (FT-IR), X-ray Photoelectron Spectroscopy (XPS) and Transmission Electron Microscopy (TEM) analysis. In addition, the application of strain LYX-2 significantly promoted the growth of vegetables about 2.4-fold. Above results indicated that highly Cd-resistant alkalizing strain LYX-2, as a novel microbial passivator, had excellent ability and reuse value to achieve the remediation of Cd-contaminated soil coupled with safe production of vegetables simultaneously.

Mitigation of atrazine-induced oxidative stress on soybean seedlings after co-inoculation with atrazine-degrading bacterium Arthrobacter sp. DNS10 and inorganic phosphorus-solubilizing bacterium Enterobacter sp. P1.

Atrazine toxicity is one of the limiting factors inhibiting sensitive plant growth. Previous studies showed that atrazine-degrading bacteria could alleviate atrazine toxicity. However, there is limited information on how atrazine-degrading bacteria and plant growth-promote bacteria alleviate atrazine toxicity in soybeans. Therefore, the current study aimed to explore the atrazine removal, phosphorus utilization, and the oxidative stress alleviation of atrazine-degrading bacterium Arthrobacter sp. DNS10 and/or inorganic phosphorus-solubilizing bacterium Enterobacter sp. P1 in the reduction of atrazine toxicity in soybean. The results showed that atrazine exposure to soybean seedlings led to significant inhibition in growth, atrazine removal, and phosphorus utilization. However, the co-inoculatied strains significantly increased seedlings biomass, chlorophyll a/b contents, and total phosphorus in leaves accompanied by great reduction of the atrazine-induced antioxidant enzymes activities and malonaldehyde (MDA) contents, as well as atrazine contents in soil and soybeans under atrazine stress. Furthermore, transcriptome analysis highlighted that co-inoculated strains increased the expression levels of genes related to photosynthetic-antenna proteins, carbohydrate metabolism, and fatty acid degradation in leaves. All the results suggest that the co-inoculation mitigates atrazine-induced oxidative stress on soybean by accelerating atrazine removal from soil and phosphorus accumulation in leaves, enhancing the chlorophyll contents, and regulating plant transcriptome. It may be suggested that co-inoculation of atrazine-degrading bacteria and inorganic phosphorus-solubilizing bacteria can be used as a potential method to alleviate atrazine toxicity to the sensitive crops.

Genomic Landscape Highlights Molecular Mechanisms Involved in Silicate Solubilization, Stress Tolerance, and Potential Growth-Promoting Activity of Bacterium Enterobacter sp. LR6.

Silicon (Si) is gaining widespread attention due to its prophylactic activity to protect plants under stress conditions. Despite Si's abundance in the earth's crust, most soils do not have enough soluble Si for plants to absorb. In the present study, a silicate-solubilizing bacterium, Enterobacter sp. LR6, was isolated from the rhizospheric soil of rice and subsequently characterized through whole-genome sequencing. The size of the LR6 genome is 5.2 Mb with a GC content of 54.9% and 5182 protein-coding genes. In taxogenomic terms, it is similar to E. hormaechei subsp. xiangfangensis based on average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH). LR6 genomic data provided insight into potential genes involved in stress response, secondary metabolite production, and growth promotion. The LR6 genome contains two aquaporins, of which the aquaglyceroporin (GlpF) is responsible for the uptake of metalloids including arsenic (As) and antimony (Sb). The yeast survivability assay confirmed the metalloid transport activity of GlpF. As a biofertilizer, LR6 isolate has a great deal of tolerance to high temperatures (45 °C), salinity (7%), and acidic environments (pH 9). Most importantly, the present study provides an understanding of plant-growth-promoting activity of the silicate-solubilizing bacterium, its adaptation to various stresses, and its uptake of different metalloids including As, Ge, and Si.

Secretome analysis of an environmental isolate Enterobacter sp. S-33 identifies proteins related to pathogenicity.

Enterobacter species are responsible for causing infections of the lower respiratory tract, urinary tract, meninges, etc. Proteins secreted by these species may act as determinants of host-pathogen interaction and play a role in virulence. Among the secreted proteins, the Type VI secretion system (T6SS) acts as a molecular nanomachine to deliver many effector proteins directly into prey cells in a contact-dependent manner. The secreted proteins may provide an idea for the interaction of bacteria to their environment and an understanding of the role of these proteins for their role in bacterial physiology and behaviour. Therefore, aim of this study was to characterize the secreted proteins in the culture supernatant by a T6SS bacterium Enterobacter sp. S-33 using nano-LC-MS/MS tool. Using a combined mass spectrometry and bioinformatics approach, we identified a total of 736 proteins in the secretome. Bioinformatics analysis predicting subcellular localization identified 110 of the secreted proteins possessed signal sequences. By gene ontology analysis, more than 80 proteins of the secretome were classified into biological or molecular functions. More than 20 percent of secretome proteins were virulence proteins including T6SS proteins, proteins involved in adherence and fimbriae formation, molecular chaperones, outer membrane proteins, serine proteases, antimicrobial, biofilm, exotoxins, etc. In summary, the results of the present study of the S-33 secretome provide a basis for understanding the possible pathogenic mechanisms and future investigation by detailed experimental approach will provide a confirmation of secreted virulence proteins in the exact role of virulence using the in vivo model.

Screening and isolation of acid-tolerant bacteria using a novel pH shift culture method

Acid-tolerant bacteria, which multiply under neutral pH and can survive under acidic pH conditions, have a potential role in various applications under acidic conditions. Despite higher biomass productivity, their isolation and utilisation are not sufficiently developed compared to those of acidophiles. It takes considerable effort to distinguish the acid-tolerant bacteria from the rest of the bacterial community using conventional screening methods. Thus, we developed a novel screening method for acid-tolerant bacteria, which involves shifting the pH between acidic and neutral conditions. With this method, the bacterium Enterobacter sp. AC06 was isolated. Based on comparisons with the results reported in previous studies, the strain can be classified as acid-tolerant bacteria. The decreases in the live cell concentrations were 3.87 and 6.16 log cycles after 3h acid treatment under pH 3.0 and 2.5, respectively. These results suggest that it is possible to isolate acid-tolerant bacteria using the pH shift culture method. In summary, this is the first study on bacterial screening based on acid tolerance. Our novel method potentially contributes to the understanding and utilisation of acid-tolerant bacteria by enhancing screening efficiency. Furthermore, our novel concept shift culture is potentially valuable for screening previously uncultured bacteria tolerant to various selective stress conditions.

Insights into the genome sequence of the glyphosate-degrading bacterium Enterobacter sp. Bisph1

Abstract. Benserradj O, Benslama O, Ghorri S. 2021. Insights into the genome sequence of the glyphosate-degrading bacterium Enterobacter sp. Bisph1. Biodiversitas 23: 817-882. Glyphosate is by far the most extensively utilized herbicide in the world, and because of its negative effects on the environment and animal health, finding microorganisms with the ability to degrade this herbicide is one of the scientists’ top priorities. Enterobacter sp. Bisph1 was isolated during prospecting glyphosate-degrading bacteria from a sandy soil of the region of Biskra in Algeria. To better understand the involvement of this strain in the degradation of glyphosate, a sequencing of the 4.5 MB genome of Enterobacter sp. Bisph1, as well as an annotation, and analysis of its genome sequence were performed in this study. Genomic DNA was sequenced on a MiSeq sequencer llumina using paired-end sequencing with the Nextera XT protocol. The genome of strain Enterobacter sp. Bisph1 comprises one chromosome of 4,578,487 bp with a GC content of 53.6%. Its 4,330 genes (78.13%) were assigned a putative function. The genome contains two intact phages and no CRISPR was found. The genome inspection also revealed the presence of the carbon-to-phosphorus (C-P) bond lyase coding genes clusters that consists of eight genes phnFHIJKLMP. The draft genome of the Enterobacter sp. Bisph1 provides insight into the role of this strain as an important agent of bioremediation of glyphosate by examining the genes known to encode the biodegradation enzymes of this herbicide. The sequencing of the genome of Bisph1 allows a better understanding of the taxonomy of this strain within the Enterobacteriaceae family.

Structural snapshot of a glycoside hydrolase family 8 endo-β-1,4-glucanase capturing the state after cleavage of the scissile bond.

Bacterial cellulose (BC), which is produced by bacteria, is a biodegradable and biocompatible natural resource. Because of its remarkable physicochemical properties, BC has attracted attention for the development and manufacture of biomedical and industrial materials. In the BC production system, the enzyme endo-β-1,4-glucanase, which belongs to glycoside hydrolase family 8 (GH8), acts as a cleaner by trimming disordered cellulose fibers to produce high-quality BC. Understanding the molecular mechanism of the endo-β-1,4-glucanase would help in developing a reasonable biosynthesis of BC. Nevertheless, all of the steps in the reaction of this endo-β-1,4-glucanase are not clear. This study confirms the BC hydrolytic activity of the endo-β-1,4-glucanase from the BC-producing bacterium Enterobacter sp. CJF-002 (EbBcsZ) and reports crystal structures of EbBcsZ. Unlike in previously reported GH8 endo-β-1,4-glucanase structures, here the base catalyst was mutated (D242A) and the structure of this mutant bound to cellooligosaccharide [EbBcsZ(D242A)CPT] was analyzed. The EbBcsZ(D242A)CPT structure showed two cellooligosaccharides individually bound to the plus and minus subsites of EbBcsZ. The glucosyl unit in subsite -1 presented a distorted 5S1 conformation, a novel snapshot of a state immediately after scissile-bond cleavage. In combination with previous studies, the reaction process of endo-β-1,4-glucanase is described and the β-1,4-glucan-trimming mechanism of EbBcsZ is proposed. The EbBcsZ(D242A)CPT structure also showed an additional β-1,4-glucan binding site on the EbBcsZ surface, which may help to accept the substrate.

Production of enzymatically hydrolyzed soybean protein isolate by a novel neutral protease from Enterobacter sp. NRCM1 to be used as a base precursor of thermal process flavours

A novel neutral protease from a newly isolated and identified bacteria Enterobacter sp. NRCM1 was used to produce the enzymatic hydrolyzed soybean protein isolate (E-SPM1). The protease was purified and biochemically characterized. The effect of hydrolysis time on degree of protein hydrolysis and released free amino acids was investigated. The enzymatic hydrolysates (E-SPM124, E-SPM148 and E-SPM172) produced after 24, 48 and 72 h, respectively were used as main precursors of beef-like flavours. The generated volatiles were determined by solid phase microextraction combined with gas chromatography- mass spectrophotometer (SPME- GC-MS). The results revealed that the optimum pH and temperature of protease activity were 7.0 and 50oC, respectively. Sample E-SPM172 showed the highest degree of hydrolysis (43.71%) and content of free amino acids (5.78 g/mL). The headspace volatiles of the model mixture based on E-SPMI72 comprised the highest content of the most important compounds for meat aroma. The results of odour sensory analysis confirmed those of GC-MS for all investigated samples. The highest score of beefy note of sample E-SPMI72was mainly correlated to the significant increase of 2-methyl-3-furanthiol, the most potent aroma compound in beef flavour. The gradual increase of savoury note was consistent with that of the disulfide compounds, which possess savoury aromatic note.

МОРФОЛОГИЧЕСКИЙ И ФИЗИОЛОГО‑БИОХИМИЧЕСКИЙ ОТВЕТ РАСТЕНИЙ НА ОБРАБОТКУ УГЛЕВОДОРОДОКИСЛЯЮЩИМИ БАКТЕРИЯМИ НА ФОНЕ НЕФТЯНОГО ЗАГРЯЗНЕНИЯ

In the field experiment, the effect of hydrocarbon-oxidizing auxin-producing bacteria Enterobacter sp. UOM 3 and Pseudomonas hunanensis IB C7 on some morphological and biochemical indicators of stress in barley plants was studied. Stress is caused by oil entering the soil. Throughout the experiment, the pollutant had an inhibitory effect on the length and weight of roots and shoots of barley plants, as well as on the size of leaves. Under such conditions, bacterialization by each of the strains caused an elongation of shoots, an increase in the wet weight of roots and shoots, and an increase in the leaf surface index compared to untreated plants in contaminated soil. In addition, the P. hunanensis IB C7 strain had a positive effect on root length. In the presence of oil, an increase in the ABA content in plants was found, to a greater extent in the roots than in the shoots. The use of bacteria reduced the amount of the hormone to values comparable to that in plants in clean soil. The level of chlorophyll in plants growing in the presence of oil was lower than in the control variant, but inoculation with microorganisms contributed to its increase. The minimum amount of flavonoids was found in control plants. In the presence of oil, the amount of flavonoids increased and was higher in the treated plants. Thus, it was found that bacterization reduces the negative consequences for barley plants caused by the ingress of oil into the soil. This was manifested in the improvement of some morphological characteristics of inoculated plants and was accompanied by a change in a number of their physiological and biochemical characteristics. Key words: oil pollution, barley plants, bacterization, Enterobacter sp., Pseudomonas hunanensis, abscisic acid, chlorophyll, flavonoids, nitrogen balance index.

A novel peroxiredoxin from the antagonistic endophytic bacterium Enterobacter sp. V1 contributes to cotton resistance against Verticillium dahliae

[Aims] To reveal the molecular mechanism of endophytic bacteria in Verticillium wilt-resistant cottons and deeply understand the interaction between soil and plants. [Methods] Active tracking screening was used for the isolation of antagonistic strain. Morphological and molecular analyses were conducted to determine its phenotypic and genotypic characteristics. MALDI-TOF/TOF MS was employed to identify the antifungal substance. Functional verification was performed by gene cloning, expression, knockout and complementation. [Results] Enterobacter sp. V1 was isolated from Verticillium-wilt-resistant cotton Xinhai 15, which showed significantly antagonistic abilities against cotton verticillium wilt. A peroxiredoxin named ProV1 with virulent against V. dahliae was obtained. The gene for the peroxiredoxin ProV1 was cloned, and the nucleotide sequence showed 85.5% similarity with peroxiredoxin C (WP 096152328) reported from E. hormaeche. The purified heterologously expressed ProV1 indicated strong inhibitory activities. Moreover, the suppression of V. dahliae also decreased in proV1 mutant strain compared with wild type strain. The inhibitory activities could be partially restored by a complementation of proV1 gene in the mutant strain. [Conclusion] The results of this study reveal that a novel peroxiredoxin from an endophytic bacterial strain Enterobacter sp. V1 can serve as a virulent factor against fungi V. dahliae, which helps understanding the interaction between endyphytic bacteria and plant pathogenic fungi, and improving the biological control of cotton Verticillium wilt.

A Genomic Perspective on the Potential of Wild-Type Rumen Bacterium Enterobacter sp. LU1 as an Industrial Platform for Bio-Based Succinate Production.

Enterobacter sp. LU1, a wild-type bacterium originating from goat rumen, proved to be a potential succinic acid producer in previous studies. Here, the first complete genome of this strain was obtained and analyzed from a biotechnological perspective. A hybrid sequencing approach combining short (Illumina MiSeq) and long (ONT MinION) reads allowed us to obtain a single continuous chromosome 4,636,526 bp in size, with an average 55.6% GC content that lacked plasmids. A total of 4425 genes, including 4283 protein-coding genes, 25 ribosomal RNA (rRNA)-, 84 transfer RNA (tRNA)-, and 5 non-coding RNA (ncRNA)-encoding genes and 49 pseudogenes, were predicted. It has been shown that genes involved in transport and metabolism of carbohydrates and amino acids and the transcription process constitute the major group of genes, according to the Clusters of Orthologous Groups of proteins (COGs) database. The genetic ability of the LU1 strain to metabolize a wide range of industrially relevant carbon sources has been confirmed. The genome exploration indicated that Enterobacter sp. LU1 possesses all genes that encode the enzymes involved in the glycerol metabolism pathway. It has also been shown that succinate can be produced as an end product of fermentation via the reductive branch of the tricarboxylic acid cycle (TCA) and the glyoxylate pathway. The transport system involved in succinate excretion into the growth medium and the genes involved in the response to osmotic and oxidative stress have also been recognized. Furthermore, three intact prophage regions ~70.3 kb, ~20.9 kb, and ~49.8 kb in length, 45 genomic islands (GIs), and two clustered regularly interspaced short palindromic repeats (CRISPR) were recognized in the genome. Sequencing and genome analysis of Enterobacter sp. LU1 confirms many earlier results based on physiological experiments and provides insight into their genetic background. All of these findings illustrate that the LU1 strain has great potential to be an efficient platform for bio-based succinate production.

Alleviation of Cd phytotoxicity and enhancement of rape seedling growth by plant growth-promoting bacterium Enterobacter sp. Zm-123.

The present study aims to investigate the impact of a metal-tolerant bacterium on metal detoxification and rape seedling growth promotion under Cd stress. The results showed that the isolated bacterium Enterobacter sp. Zm-123 has capability to resist Cd (200mg/L), produce IAA (26.67mg/L) and siderophores (82.34%), and solubilize phosphate (137.5mg/L), etc. Zm-123 inoculation significantly enhanced the fresh weight of rape seedlings from 9.47 to 19.98% and the root length from 10.42 to 57.05% compared with non-inoculation group under different concentrations of Cd (0, 0.5, 1, 3, 5mg/L) (p < 0.05). It also significantly increased the content of chlorophyll, soluble sugar, soluble protein, and proline (p < 0.05) in rape seedlings. Moreover, a significant elevation in catalase (CAT) and peroxidase (POD) activities and a significant reduction in malondialdehyde (MDA), electrolyte leakage (EL), and Cd content in rape seedlings were detected owing to Zm-123 inoculation (p < 0.05). The combined results imply that strain Zm-123 can alleviate the Cd phytotoxicity and promote the rape seedling growth by improving the physiological activity and antioxidant level, which can be potentially applied to protect plants from Cd toxicity.

The influence on biosorption potentials of metal-resistant bacteria Enterobacter sp. EG16 and Bacillus subtilis DBM by typical red soil minerals

Due to the inevitable interaction between bacteria and soil minerals, whether bacteria could exert the excepted functions in the soil is yet to be confirmed and how minerals affect biosorption potential is needed to be investigated. The purposes of this study were to explore the adsorption behavior and mechanism of metal-resistant bacteria attaching to typical red soil minerals under different conditions and to discuss whether biosorption potential would be altered after the addition of functional bacteria to soil. Here, we tested equilibrium adsorption along with zeta potential analysis, scanning electron microscopy (SEM), Fourier transform infrared spectra (FTIR), and desorption to investigate the adsorption of two metal-resistant bacteria (Gram-negative Enterobacter sp. EG16 and Gram-positive Bacillus subtilis DBM) onto typical red soil minerals including goethite, kaolinite, and gibbsite under different environmental factors. We found that the minerals adsorbed more EG16 cells than DBM, and the adsorption capacities followed the sequence of goethite > kaolinite > gibbsite. Both the surfaces of bacteria and mineral were pH-dependent in our tested pH range (4.0–7.0), and the maximum adsorption was at pH 4.0. Increasing ionic strength resulted in less adsorption of bacteria onto goethite, whereas bacterial adsorption onto kaolinite was the opposite. These observations elucidated that electrostatic interaction was the dominant contributor. The adsorption conformed to the Langmuir and pseudo-second-order kinetic model implying chemical adsorption, and the result of FTIR also supported that. Desorption experiment has suggested the significant contribution of electrostatic force and the minor dominator of functional groups for bacteria–mineral combination. The results of this study indicated that electrostatic interaction was the dominant contributor to bacteria–mineral combination and functional groups coordination contributed less than 10%. This finding suggested most adhered bacteria could still provide active sites for heavy metal biosorption. Thus, although 50–90% of added functional bacteria has adhered to minerals, the bacteria–mineral combination had a limited impact on biosorption.

Anthraquinone-2,6-disulfonate enhanced biodegradation of dibutyl phthalate: Reducing membrane damage and oxidative stress in bacterial degradation

Plasticizer dibutyl phthalate (DBP) pollution has received more and more attention. In this study, a DBP degrading bacteria Enterobacter sp. DNB-S2 was found to suffer membrane damage and oxidative stress during DBP degradation. Physiological and transcriptome analysis showed that 100 μmol L−1 anthraquinone-2,6-disulfonate (AQDS) could enhance the ability of strain DNB-S2 for biodegradation of DBP. AQDS adjusted the cell surface structure, including increase levels of hydrophobic and unsaturated fatty acids. These changes increased the chemotactic ability of the strain DNB-S2 to the hydrophobic pollutant DBP and the fluidity of the cell membrane. The expression of methyl chemotactic protein and genes associated with cell membrane-fixed components were up-regulated. AQDS also improved the scavenging ability of ·OH and H2O2 of DNB-S2 by promoting expression genes related to glutathione metabolism, thereby reducing oxidative stress. These results will provide new insights into the biodegradation of DBP.