Bacterial Swimming Speed Research Articles

PlzD modifies Vibrio vulnificus foraging behavior and virulence in response to elevated c-di-GMP.

Many free-swimming bacteria propel themselves through liquid using rotary flagella, and mounting evidence suggests that the inhibition of flagellar rotation initiates biofilm formation, a sessile lifestyle that is a nearly universal surface colonization paradigm in bacteria. In general, motility and biofilm formation are inversely regulated by the intracellular second messenger bis-(3´-5´)-cyclic dimeric guanosine monophosphate (c-di-GMP). Here, we identify a protein, PlzD, bearing a conserved c-di-GMP binding PilZ domain that localizes to the flagellar pole in a c-di-GMP-dependent manner and alters the foraging behavior, biofilm, and virulence characteristics of the opportunistic human pathogen, Vibrio vulnificus. Our data suggest that PlzD interacts with components of the flagellar stator to decrease bacterial swimming speed and changes in swimming direction, and these activities are enhanced when cellular c-di-GMP levels are elevated. These results reveal a physical link between a second messenger (c-di-GMP) and an effector (PlzD) that promotes transition from a motile to a sessile state in V. vulnificus.

The Effect of the Second Messenger c-di-GMP on Bacterial Chemotaxis in Escherichia coli

c-di-GMP is a ubiquitous bacterial second messenger that plays a central regulatory role in diverse biological processes. c-di-GMP was known to regulate chemotaxis in multiple bacterial species, but its effect on Escherichia coli chemotaxis remained unclear. As an effector of c-di-GMP in E. coli, YcgR when bound with c-di-GMP interacts with the flagellar motor to reduce its speed and its probability of rotating clockwise (CW bias). Here, we found that a significant fraction of the c-di-GMP::YcgR dynamically exchange between the motor and the cytosol. Through fluorescent measurements, we found that there was no competitive binding between the chemotaxis response regulator CheY-P and c-di-GMP::YcgR to the motor. To test the influence of elevated c-di-GMP levels on the chemotaxis pathway, we measured the chemotactic responses of E. coli cells using a FRET assay, finding that elevated c-di-GMP levels had no effect on the upstream part of chemotaxis pathway down to the level of CheY-P concentration. This suggested that the possible effect of elevated c-di-GMP levels on chemotactic motion was through regulation of motor speed and CW bias. Using stochastic simulations of chemotactic swimming, we showed that the effects of reducing motor speed and decreasing CW bias on chemotactic drift velocity are compensating for each other, resulting in minimal effect of elevated c-di-GMP levels on E. coli chemotaxis. Therefore, elevated c-di-GMP levels promote the transition from motile to sedentary forms of bacterial life by reducing the bacterial swimming speed and CW bias, while still maintaining a nearly intact chemotaxis capability in E. coli. IMPORTANCE The ubiquitous bacterial second messenger c-di-GMP was known to regulate chemotaxis in many bacterial species, but its effect on E. coli chemotaxis was unclear. Here we studied the effect of elevated c-di-GMP levels on chemotaxis in E. coli. We found that the binding of c-di-GMP::YcgR (its effector) and the chemotaxis response regulator CheY-P to the flagellar motor are noncompetitive, and elevated c-di-GMP levels do not affect the upstream part of the chemotaxis pathway down to the level of CheY-P concentration. Elevated c-di-GMP levels exert direct effects on the flagellar motor by reducing its speed and CW bias, but the resulting effects on chemotaxis performance are compensating for each other. Our findings here showed that elevated c-di-GMP levels maintain a nearly intact chemotaxis capability when promoting the transition from motile to sedentary forms of bacterial life in E. coli.

Helical locomotion in a porous medium

Microorganisms and artificial microswimmers often need to swim through environments that are more complex than purely viscous liquids in their natural habitats or operational environments, such as gel-like mucus, wet soil, and aquifers. The question of how the properties of these complex environments affect locomotion has attracted considerable recent attention. In this paper, we present a theoretical model to examine how the additional resistance due to the network of stationary obstacles in a porous medium affects helical locomotion. Here, we focus on helical locomotion for its ubiquity as a propulsion mechanism adopted by many swimming bacteria and artificial microswimmers. We show that the additional resistance can have qualitatively different effects on various scenarios of helical locomotion: (1) a helical propeller driven by an external torque, (2) a free swimming bacterium consisting of a helical flagellum and a head, and (3) a cargo-carrying helical propeller driven by an external torque. Our results elucidate the subtle and significant differences between torqued helical propulsion versus force-free and torque-free swimming in a porous medium. We also remark on the limitations as well as potential connections of our results with experimental measurements of bacterial swimming speeds in polymeric solutions.

Tuning the torque-speed characteristics of the bacterial flagellar motor to enhance swimming speed

In a classic paper, Purcell [Proc. Natl. Acad. Sci. U. S. A. 94, 11307 (1997)10.1073/pnas.94.21.11307] analyzed the dynamics of flagellated bacterial swimmers and derived a geometrical relationship which maximizes the propulsion efficiency. Experimental measurements for wild-type bacterial species E. coli have revealed that they closely satisfy this geometric optimality. However, dependence of the flagellar motor speed on the load and more generally the role of the torque-speed characteristics of the flagellar motor are not considered in Purcell's original analysis. Here we derive a tuned condition representing a match between the flagella geometry and the torque-speed characteristics of the flagellar motor to maximize the bacterial swimming speed for a given load. This condition is independent of the geometric optimality condition derived by Purcell. Interestingly, this condition is not satisfied by wild-type E. coli which swims 2-3 times slower than the maximum possible speed given the amount of available motor torque. Finally, we present experimental data on swimming dynamics of a cargo laden bacterial system which follows our analytical model. Our analysis also reveals the existence of an anomalous propulsion regime where the swim speed increases with increasing load (drag).

Enhanced bacterial swimming speeds in macromolecular polymer solutions

The locomotion of swimming bacteria in simple Newtonian fluids can successfully be described within the framework of low Reynolds number hydrodynamics. The presence of polymers in biofluids generally increases the viscosity, which is expected to lead to slower swimming for a constant bacterial motor torque. Surprisingly, however, several experiments have shown that bacterial speeds increase in polymeric fluids, and there is no clear understanding why. Therefore we perform extensive coarse-grained simulations of a bacterium swimming in explicitly modeled solutions of macromolecular polymers of different lengths and densities. We observe an increase of up to 60% in swimming speed with polymer density and demonstrate that this is due to a depletion of polymers in the vicinity of the bacterium leading to an effective slip. However this in itself cannot predict the large increase in swimming velocity: coupling to the chirality of the bacterial flagellum is also necessary.

Effect of gamma-ray irradiation on Escherichia coli motility

AbstractThe effects of ionizing radiation on bacteria are generally evaluated from the dose-dependent survival ratio, which is determined by colony-forming ability and mutation rate. The mutagenic damage to cellular DNA induced by radiation has been extensively investigated; however, the effects of irradiation on the cellular machinery in situ remain unclear. In the present work, we irradiated Escherichia coli cells in liquid media with gamma rays from 60Co (in doses up to 8 kGy). The swimming speeds of the cells were measured using a microscope. We found that the swimming speed was unaltered in cells irradiated with a lethal dose of gamma rays. However, the fraction of motile cells decreased in a dose-dependent manner. Similar results were observed when protein synthesis was inhibited by treatment with kanamycin. Evaluation of bacterial swimming speed and the motile fraction after irradiation revealed that some E. coli cells without the potential of cell growth and division remained motile for several hours after irradiation.

High Motility Reduces Grazing Mortality of Planktonic Bacteria

We tested the impact of bacterial swimming speed on the survival of planktonic bacteria in the presence of protozoan grazers. Grazing experiments with three common bacterivorous nanoflagellates revealed low clearance rates for highly motile bacteria. High-resolution video microscopy demonstrated that the number of predator-prey contacts increased with bacterial swimming speed, but ingestion rates dropped at speeds of >25 microm s(-1) as a result of handling problems with highly motile cells. Comparative studies of a moderately motile strain (<25 microm s(-1)) and a highly motile strain (>45 microm s(-1)) further revealed changes in the bacterial swimming speed distribution due to speed-selective flagellate grazing. Better long-term survival of the highly motile strain was indicated by fourfold-higher bacterial numbers in the presence of grazing compared to the moderately motile strain. Putative constraints of maintaining high swimming speeds were tested at high growth rates and under starvation with the following results: (i) for two out of three strains increased growth rate resulted in larger and slower bacterial cells, and (ii) starved cells became smaller but maintained their swimming speeds. Combined data sets for bacterial swimming speed and cell size revealed highest grazing losses for moderately motile bacteria with a cell size between 0.2 and 0.4 microm(3). Grazing mortality was lowest for cells of >0.5 microm(3) and small, highly motile bacteria. Survival efficiencies of >95% for the ultramicrobacterial isolate CP-1 (< or =0.1 microm(3), >50 microm s(-1)) illustrated the combined protective action of small cell size and high motility. Our findings suggest that motility has an important adaptive function in the survival of planktonic bacteria during protozoan grazing.

Individual-based modelling of growth and migration of Salmonella enteritidis in hens' eggs

An individual-based model (IbM) was developed to describe the growth and migration of Salmonella enteritidis in hens' eggs. The Bacteria Simulator (BacSim) environment was used to implement the model; the bacteria are represented by spheres that grow by nutrient uptake and divide in two daughter cells upon exceeding a certain threshold volume. Motility of the Salmonella bacteria was described by a run and tumble mechanism. For the sake of simplicity, the bacteria were assumed to grow exponentially, an appropriate assumption for the initial phase of growth relevant for shelf-life predictions. Both albumen and yolk were assumed to be homogeneous. The impact of several model parameters (chemotaxis, growth rate, initial contamination numbers and bacterial swimming speed) was assessed by a sensitivity analysis. The results show that chemotaxis towards the yolk would have a strong effect on the time needed to reach the vitelline membrane, an aspect that future research should focus on. The contamination position had less impact on the time to reach the vitelline membrane. The simulation results illustrate the need for more detailed knowledge on the subject of bacterial migration in hens' eggs. Our model can easily incorporate this knowledge when it becomes available.

A Mathematical Explanation of an Increase in Bacterial Swimming Speed with Viscosity in Linear-Polymer Solutions

Bacterial swimming speed is sometimes known to increase with viscosity. This phenomenon is peculiar to bacterial motion. Berg and Turner ( Nature. 278:349–351, 1979) indicated that the phenomenon was caused by a loose, quasi-rigid network formed by polymer molecules that were added to increase viscosity. We mathematically developed their concept by introducing two apparent viscosities and obtained results similar to the experimental data reported before. Addition of polymer improved the propulsion efficiency, which surpasses the decline in flagellar rotation rate, and the swimming speed increased with viscosity.

Role of bacterial phenotypic traits in selective feeding of the heterotrophic nanoflagellate Spumella sp.

The influence of different bacterial phenotypic traits on the feeding selectivity of a bac- terivorous nanoflagellate was investigated in laboratory experiments. Twelve bacterial isolates from freshwater habitats were characterized in terms of cell size, morphology, capsule formation, surface hydrophobicity and charge, and swimming behavior. Mechanisms of differential flagellate feeding on these isolates were studied in short-term grazing experiments by high-resolution video microscopy using the nanoflagellate Spumella sp. as a model interception-feeding predator. The dif- ferentiation into distinct stages of the feeding process (contact, capture, ingestion) revealed a com- plex selection behavior illustrated by the relatively small proportion of ingested bacteria over cell contacts. We found that bacterial swimming speed increased contact rates but also decreased flagel- late capture efficiency, which had a compensating effect on overall ingestion rates. Bacterial cell size revealed no correlation with flagellate contact rates but an effective inhibition of ingestion rates when exceeding a critical size limit. Correlation analysis presented no bacterial property to account for the residual variability of flagellate ingestion efficiencies. Experiments with specifically coated artificial particles provided evidence for the relative importance of the biochemical surface composi- tion in flagellate food selection compared to physicochemical interaction forces. Only extreme charges beyond -45 mV reduced flagellate ingestion rates. Our results reinforce the idea that bacte- rial cell size strongly affects the feeding success of bacterivorous flagellates, and further implicates size-independent bacterial traits such as swimming speed and biochemical surface composition in this feeding success.

Bacterial swimming speed and rotation rate of bundled flagella

Swimming speed (v) and flagellar-bundle rotation rate (f) of Salmonella typhimurium, which has peritrichous flagella, were simultaneously measured by laser dark-field microscopy (LDM). Clear periodic changes in the LDM signals from a rotating bundle indicated in-phase rotation of the flagella in the bundle. A roughly linear relation between v and f was observed, though the data points were widely distributed. The ratio of v to f (v –f ratio), which indicates the propulsive distance during one flagellar rotation, was 0.27 μm (11% of the flagellar pitch) on average. The experimental v –f ratio was twice as large as the calculated one on the assumption that a cell had a single flagellum. A flagellar bundle was considered to propel a cell more efficiently than a single flagellum.

Bacterial swimming speed and rotation rate of bundled flagella.

Swimming speed (v) and flagellar-bundle rotation rate (f) of Salmonella typhimurium, which has peritrichous flagella, were simultaneously measured by laser dark-field microscopy (LDM). Clear periodic changes in the LDM signals from a rotating bundle indicated in-phase rotation of the flagella in the bundle. A roughly linear relation between v and f was observed, though the data points were widely distributed. The ratio of v to f (v-f ratio), which indicates the propulsive distance during one flagellar rotation, was 0.27 microm (11% of the flagellar pitch) on average. The experimental v-f ratio was twice as large as the calculated one on the assumption that a cell had a single flagellum. A flagellar bundle was considered to propel a cell more efficiently than a single flagellum.

2P126高分子溶液中の細菌遊泳速度が粘度とともに上昇する現象を説明する仮説

2P126高分子溶液中の細菌遊泳速度が粘度とともに上昇する現象を説明する仮説

A novel in vitro effect of the mucosal protective agent sofalcone – inhibition of chemotactic motility in Helicobacter pylori

Motility of Helicobacter pylori is essential for colonization. H. pylori has been shown to exhibit chemotactic activity toward urea and sodium and bicarbonate ions, which are secreted from the gastric epithelia. The importance of urease activity for chemotactic motility of H. pylori in a viscous environment has also been shown. Consequently, application of drugs inhibiting chemotactic motility has been proposed as a strategy for H. pylori eradication. This inhibitory effect can be evaluated through assay of chemotaxis and swarming. H. pylori CPY3401 and ATCC43504 were grown on brucella agar plates/broth supplemented with 3% horse serum under microaerobic conditions (N2, 85%; O2, 5%; CO2, 10%). For motility assay, H. pylori cells grown on brucella-serum agar were stabbed into motility agar containing 0.35% refined agar in brucella-serum broth and the swarming zone was measured. For the chemotaxis assay, cells were suspended in 10 mM potassium phosphate buffer, pH 7.0, with 3% polyvinyl-pyrrolidone and assayed as described previously. Bacterial swimming in the fluid environment was observed under dark-field microscopy. Numbers of bacteria attracted toward 1 microM flurofamide were reduced with increasing concentrations of sofalcone (0.2-222 microM). In addition, the size of the swarming zone was reduced in motility agar containing 22 and 222 microM sofalcone. On the other hand, 22 microM sofalcone did not inhibit bacterial growth on day 3. Bacterial swimming speed in brucella broth was slower in the presence of 22 and 222 microM sofalcone than in its absence. Sofalcone was found to inhibit chemotactic motility of H. pylori. This drug may be useful for inhibiting the bacterium's ability to colonize the human stomach.

細菌の遊泳速度と付着との関係について

細菌の遊泳速度と付着との関係について

Analysis of bacterial swimming speed approaching a solid–liquid interface

AbstractPrevious experimental studies have found that surface interactions significantly affect the transport of motile bacteria through small tubes, along solid surfaces, and through porous media. However, the role that hydrodynamic forces play in the interactions between solid surfaces and motile bacteria remains unclear. In this study, the swimming speeds of populations of Escherichia coli bacteria were measured near (&lt; 10 μm) and far (&gt;10 μm) from a flat glass surface at four ranges of orientations to the surface (0°–45°, 45°–90°, 90°–135°, and 135°–180°). Populations of bacteria close to the surface and moving in the orientation range most perpendicular (0–45°) to the surface experienced the greatest change in the swimming speed when compared to the population in the same orientation range located far from the surface. The decrease in swimming speed experienced by this population was on the same order as that predicted by hydrodynamic models of bacterial swimming near surfaces.

Simultaneous measurement of bacterial flagellar rotation rate and swimming speed

Swimming speeds and flagellar rotation rates of individual free-swimming Vibrio alginolyticus cells were measured simultaneously by laser dark-field microscopy at 25, 30, and 35 degrees C. A roughly linear relation between swimming speed and flagellar rotation rate was observed. The ratio of swimming speed to flagellar rotation rate was 0.113 microns, which indicated that a cell progressed by 7% of pitch of flagellar helix during one flagellar rotation. At each temperature, however, swimming speed had a tendency to saturate at high flagellar rotation rate. That is, the cell with a faster-rotating flagellum did not always swim faster. To analyze the bacterial motion, we proposed a model in which the torque characteristics of the flagellar motor were considered. The model could be analytically solved, and it qualitatively explained the experimental results. The discrepancy between the experimental and the calculated ratios of swimming speed to flagellar rotation rate was about 20%. The apparent saturation in swimming speed was considered to be caused by shorter flagella that rotated faster but produced less propelling force.

Application of splines to the calculation of bacterial swimming speed distributions

A new method of extracting information about bacterial speeds from photon correlation spectroscopy is presented. This method has the advantage that an estimation of the translational speed distribution is directly varied so as to achieve a best least-squares fit to the experimental autocorrelation function. The theory of spline approximations to continuous functions is briefly outlined. The importance of the previously disregarded diffusional component of bacterial motion is discussed. Experimental data from Salmonella at a low scattering angle is analyzed by this method of spline approximation and the distribution of translational speeds is obtained.