Bacterial Strain Typing Research Articles

Antioxidant and Antimicrobial Activities of 4H-Chromene Based Indole-Pyrimidine Hybrids: Synthesis and Molecular Docking Studies.

A series of 4H-Chromene Based Indole-Pyrimidine Hybrids synthesized using simple and efficient multicomponent reaction. The title molecules were evaluated for their invitro antioxidant and antimicrobial activities. Compounds 8 g containing bromo substituted naphthalene displayed potent antioxidant activity with IC50 value of 1.09±0.34 μM and 1.10±0.36 μM. Compound 10 a, a 4-methylphenyl derivative presented potent activity with antioxidant activity with IC50 value of 1.29±0.35 μM and 1.43±0.38 μM. Subsequently, compounds 8 a, 8 b, 8 d and 10 g had shown prominent percentage of inhibition and derived effective IC50 values in comparison to reference drug Ascorbic Acid. The invitro antimicrobial activity carried out against two gram positive and two gram-negative bacteria, and two fungal strains using Ampicillin and Itraconazole as refence drugs. Compound 10 f exhibited exceptional efficacy against all types of bacterial and fungal strains compared to Ampicillin and Itraconazole, compounds 8 e and 8 g showed activity against bacterial strains whereas compound 10 g exhibited the most effective zone of inhibition against fungal strains. The molecular docking study against crystal structure of NADPH oxidase obtained supporting docking scores and showed notable binding interactions such as H-bond and hydrophobic.

Synthesis, antimicrobial activity, and biofilm inhibition studies of 1,2,3-triazole-containing 2,3-dihydrothiazole

The newly synthesized 1,2,3-triazole-thiazole hybrids were first evaluated for their antimicrobial activity against different microbial strains. Most of it showed a marked selectivity against Gram-positive and Gram-negative bacterial strains. The MIC assay was then assessed; for S. aureus, 4a was equipotent to the reference neomycin, while 3a, 3b, and 8b were 2-fold lower. For E. coli, compounds 3a, 4a, and 8c were equipotent to neomycin, while 5a was 8-fold higher, and 8d was 2-fold higher. Most of tested compounds showed superiority to the reference drug against C. albicans; 8a and 8e showed MIC value of 16-fold higher than neomycin, while 3a was 8-fold higher. Also, 3b and 8f were 4-fold higher; 8d was 2-fold higher, while 5a was equipotent to neomycin against the same microbe. Further biofilm formation inhibition assay was conducted to the most active compounds, 5a was the most active against the three types of bacterial strains.

Surface nanocoating of bacteria as a versatile platform to develop living therapeutics.

Bacteria have been extensively utilized as living therapeutics for disease treatment due to their unique characteristics, such as genetic manipulability, rapid proliferation and specificity to target disease sites. Various in vivo insults can, however, decrease the vitality of dosed bacteria, leading to low overall bioavailability. Additionally, the innate antigens on the bacterial surface and the released toxins and metabolites may cause undesired safety issues. These limitations inevitably result in inadequate treatment outcomes, thereby hindering the clinical transformation of living bacterial therapeutics. Recently, we have developed a versatile platform to prepare advanced living bacterial therapeutics by nanocoating bacteria individually via either chemical decoration or physical encapsulation, which can improve bioavailability and reduce side effects for enhanced microbial therapy. Here we use interfacial self-assembly to prepare lipid membrane-coated bacteria (LCB), exhibiting increased resistance against a variety of harsh environmental conditions owing to the nanocoating's protective capability. Meanwhile, we apply mechanical extrusion to generate cell membrane-coated bacteria (CMCB), displaying improved biocompatibility owing to the nanocoating's shielding effect. We describe their detailed preparation procedures and demonstrate the expected functions of the coated bacteria. We also show that following oral delivery and intravenous injection in mouse models, LCB and CMCB present appealing potential for treating colitis and tumors, respectively. Compared with bioengineering that lacks versatile molecular tools for heterogeneous expression, the surface nanocoating technique is convenient to introduce functional components without restriction on bacterial strain types. Excluding bacterial culture, the fabrication of LCB takes ~2 h, while the preparation of CMCB takes ~5 h.

Synthesis, Characterization, Antimicrobial Activity, DFT, Molecular Docking, and ADMET of 4-Chlorophenyazolquniolin-8-ol and Its Metal Complexes

In this study, we prepared 4-chlorophenylazoquinoline, a derivative of 8-hydroxyquinoline, with Mn(II), Co(II), Ni(II), Cu(II), and Zn(II) ions to create metal complexes. We used various physical and spectroscopic methods to characterize the compound and its metal complexes, including molar conductivity measurements, melting point analysis, elemental analysis, electronic absorption spectroscopy, mass spectrometry, magnetic resonance spectroscopy, infrared spectroscopy, and thermogravimetric analysis. The octahedral geometry of all prepared complexes has been confirmed. To assess the antimicrobial activity, we examined two types of bacterial strains and two types of fungal strains. The antimicrobial activity of the prepared compounds was observed, and the higher increase was observed in the copper complex. The compounds were studied computationally after optimizing the angles, lengths, and bonds using the basic set 6-31G(d,p)/LANL2DZ. The molecular docking study of the compounds with the Alzheimer's disease protein 4BDT showed significant activity in binding to the amino acids of HL, C1, C2, C3, C4, and C5 compounds, with affinity energies of -6.4, -6.9, -6.9, -6.7, and -7.2 kcal.mol-1 for the compounds, respectively. To evaluate the safety of the prepared compounds in different drug designs, we employed the ADMET study, reducing the risk of failure in advanced drug design stages. The results of the ADMET showed a relative decrease in the toxicity and carcinogenicity factor. However, there are indications of metabolic risk and cellular uptake, requiring further study.

Enterococcal Bacteremia outbreaks during SARS-COV-2 in Intensive Care Unit (ICU): The role of Strain Identification

Background: An unprecedented burden of morbidity and mortality has been reported in patients admitted to healthcare facilities with SARS-COV-2 infection globally since March 2020. A higher incidence of ICU-acquired bloodstream infection has been described with the cumulative risk increased with the length of ICU stay, use of steroids, anti-inflammatory agents, and indwelling catheters. Additionally, SARS-COV-2 infection may increase the risk of bacteremia from gastrointestinal flora such as Enterococcus species by disrupting the gastrointestinal barrier and microbiome. Methods: We aimed to investigate the outbreaks of Enterococcus bacteremia in patients with SARS-COV-2 infection and included patients aged>18 years admitted to the ICU at the Oklahoma City Veterans Affairs Medical Center who were infected with SARS-COV-2 and were identified as having positive blood cultures for Enterococcus faecalis, Enterococcus faecium including vancomycin-resistant species and other bacterial or candida species between March 1, 2020, to March 9, 2022. We collected the following data: duration of hospitalization including ICU stay, unit and room location during the hospital stay, blood culture collection date and results, duration, and site of central line placement, duration of ventilation, administration of antimicrobials and COVID-19 directed therapeutics using computerized patient record system (CPRS). We sent 10 E. faecalis and 12 E. Faecium isolates for genetic analysis. DNA was sequestered from each isolate and multi-locus sequence typing (MLST) was performed by amplifying 7 regions of the E. faecalis genome and 7 regions of the E. faecium genome by polymerase chain reaction (PCR). Resulting amplicons were sequenced and allele type for each gene region and overall sequence type was determined using MLST database (http://pubmlst.org). Results: There were 22 episodes of enterococcal bacteremia in a 3-month duration in the ICU in 20 patients of which 17 were associated with another episode with the same strain (Figure-1-2). Central line placement was noted in 18/22 episodes. Genetic analysis by multi-locus sequence typing of enterococcal bacterial strains was performed by the Public Health Reference Laboratory, Palo Alto. Similar strains were localized to patients in the same geographical region in the ICU (Figure 3). The isolates from 2 other patients who presented with the same strain of Enterococcus but were never hospitalized at the same time during the COVID-19 pandemic were localized to another hospital where both had received care at different times. Conclusion: Higher rates of enterococcal bacteremia were reported during the SARS-COV-2 pandemic. Geographical proximity with strained infection control measures accounted for ICU outbreaks seen in our tertiary care setup.

A comparative study of the corrosion of Q235 carbon steel in six different strains of marine-isolated sulfate reducing prokaryote

Biocorrosion in marine environments is often associated with biofilms of sulfate reducing prokaryotes. However, the corrosion behaviors of steel differed greatly between the bacterial species. In this study, six strains of sulfate reducing prokaryote including 3 strains of strictly anaerobic bacteria and 3 strains of facultative anaerobic bacteria were isolated from the steel rust immersed in Sanya, China. The corrosion behavior of Q235 carbon steels by isolated six strains was studied by weight loss analysis, electrochemistry measurements, and surface morphology observation. In addition, the relationship between bacterial corrosivity and strain type was investigated. The results indicated that there is no direct relationship between the corrosivity of bacteria and strain type, whether the bacteria were strictly anaerobic or not. The corrosion rates of steel coupons fluctuated with the strain properties and soaking time. Among the strains tested, the strains belonging to Proteobacteria had relatively high corrosion rates on steel coupons, whereas, strain Virgibacillus Dokdonensis of Firmicutes has the lowest corrosion rate. The results provide a guiding basis for exploring the mechanism of microbial corrosion and controlling marine microbial corrosion.

Tackling salmonellosis: A comprehensive exploration of risks factors, impacts, and solutions.

Salmonellosis, caused by Salmonella species, is one of the most common foodborne illnesses worldwide with an estimated 93.8 million cases and about 155,00 fatalities. In both industrialized and developing nations, Salmonellosis has been reported to be one of the most prevalent foodborne zoonoses and is linked with arrays of illness syndromes such as acute and chronic enteritis, and septicaemia. The two major and most common Salmonella species implicated in both warm-blooded and cold-blooded animals are Salmonella bongori and Salmonella enterica. To date, more than 2400 S. enterica serovars which affect both humans and animals have been identified. Salmonella is further classified into serotypes based on three primary antigenic determinants: somatic (O), flagella (H), and capsular (K). The capacity of nearly all Salmonella species to infect, multiply, and survive in human host cells with the aid of their pathogenic and virulence arsenals makes them deadly and important public health pathogens. Primarily, food-producing animals such as poultry, swine, cattle, and their products have been identified as important sources of salmonellosis. Additionally, raw fruits and vegetables are among other food types that have been linked to the spread of Salmonella spp. Based on the clinical manifestation of human salmonellosis, Salmonella strains can be categorized as either non-typhoidal Salmonella (NTS) and typhoidal Salmonella. The detection of aseptically collected Salmonella in necropsies, environmental samples, feedstuffs, rectal swabs, and food products serves as the basis for diagnosis. In developing nations, typhoid fever due to Salmonella Typhi typically results in the death of 5%-30% of those affected. The World Health Organization (WHO) calculated that there are between 16 and 17 million typhoid cases worldwide each year, with scaring 600,000 deaths as a result. The contagiousness of a Salmonella outbreak depends on the bacterial strain, serovar, growth environment, and host susceptibility. Risk factors for Salmonella infection include a variety of foods; for example, contaminated chicken, beef, and pork. Globally, there is a growing incidence and emergence of life-threatening clinical cases, especially due to multidrug-resistant (MDR) Salmonella spp, including strains exhibiting resistance to important antimicrobials such as beta-lactams, fluoroquinolones, and third-generation cephalosporins. In extreme cases, especially in situations involving very difficult-to-treat strains, death usually results. The severity of the infections resulting from Salmonella pathogens is dependent on the serovar type, host susceptibility, the type of bacterial strains, and growth environment. This review therefore aims to detail the nomenclature, etiology, history, pathogenesis, reservoir, clinical manifestations, diagnosis, epidemiology, transmission, risk factors, antimicrobial resistance, public health importance, economic impact, treatment, and control of salmonellosis.

Discovery of novel 1,2,4-triazole tethered β-hydroxy sulfides as bacterial tyrosinase inhibitors: synthesis and biophysical evaluation through in vitro and in silico approaches.

In this study, a series of 1,2,4-triazole-tethered β-hydroxy sulfide scaffolds 11a-h was synthesized in good to remarkable yields (69-90%) through the thiolysis of oxiranes by the thiols in aqueous basic catalytic conditions. The synthesized 1,2,4-triazole-tethered β-hydroxy sulfides were screened against bacterial tyrosinase enzyme, and Gram-positive and Gram-negative bacterial cultures i.e., (S. aureus) Staphylococcus aureus & (E. coli) Escherichia coli. Among the synthesized derivatives, the molecules 11a (IC50 = 7.67 ± 1.00 μM), 11c (IC50 = 4.52 ± 0.09 μM), 11d (IC50 = 6.60 ± 1.25 μM), and 11f (IC50 = 5.93 ± 0.50 μM) displayed the better tyrosinase inhibitory activity in comparison to reference drugs ascorbic acid (IC50 = 11.5 ± 1.00 μM) and kojic acid (IC50 = 30.34 ± 0.75 μM). The molecule benzofuran-triazol-propan-2-ol 11c proved to be the most potent bacterial tyrosinase inhibitory agent with a minimum IC50 of 4.52 ± 0.09 μM, as compared to other synthesized counterparts and both standards (kojic acid and ascorbic acid). The compound diphenyl-triazol-propan-2-ol 11a and benzofuran-triazole-propan-2-ol 11c showed comparable anti-bacterial chemotherapeutic efficacy with minimum inhibitory concentrations (MIC = 2.0 ± 2.25 mg mL-1 and 2.5 ± 0.00 mg mL-1, respectively) against S. aureus bacterial strain in comparison with standard antibiotic penicillin (MIC = 2.2 ± 1.15 mg mL-1). Furthermore, among the synthesized derivatives, only compound 11c demonstrated better anti-bacterial activity (MIC = 10 ± 0.40 mg mL-1) against E. coli, which was slightly less than the standard antibiotic i.e., penicillin (MIC = 2.4 ± 1.00 mg mL-1). The compound 11c demonstrated a better binding score (-7.08 kcal mol-1) than ascorbic acid (-5.59 kcal mol-1) and kojic acid (-5.78 kcal mol-1). Molecular docking studies also validate the in vitro anti-tyrosinase assay results; therefore, the molecule 11c can be the lead bacterial tyrosinase inhibitor as well as the antibacterial agent against both types of bacterial strains after suitable structural modifications.

Study on Drug Resistance to Treatment for Ureaplasma Urealyticum Infections in the Female Genital Tract.

Ureaplasma urealyticum (U. urealyticum) commonly occurs in female genitourinary infections, and its different biovars and serotypes have varying degrees of resistance to different antibiotics. This study aimed to ex-plore the characteristics of U. urealyticum infection and drug-resistant profiles in Chinese females. We included 1,045 females with genital tract infections who visited Tangshan Workers' Hospital and Tangshan Maternal and Child Health Center from September 2017 to December 2018. The bacteria were selectively cultured, and drug sensitivity experiments were conducted. Eight pairs of oligonucleotide primers were designed, and polymerase chain reaction (PCR) was performed to amplify specific DNA fragments to perform bacterial strain typing. Among the 1,045 participants included, 566 (54.11%) participants were positive for mycoplasma infection. There were 432 (41.34%) participants with U. urealyticum infection, accounting for 76.33% of the positive participants. The infection rate of U. urealyticum was the highest in females who were 21 - 30 years old, followed by those who were 31 - 40 years old. Ureaplasma urealyticum showed the highest sensitivity to tetracyclines and the greatest resistance to quinolones. The biovar 1 of U. urealyticum with the highest detection rate of serotype 4, accounted for 66.88%. The biovar 2 of U. urealyticum mainly showed mixed subtypes 2 and 3. Biovar 2 showed higher resistance to sparfloxacin, clarithromycin, josamycin, and doxycycline than biovar 1. Women might be more susceptible to U. urealyticum, especially if they are of childbearing age. Urea-plasma urealyticum is mainly caused by a single serotype 6 infection. The resistance of U. urealyticum to quinolone (e.g., norfloxacin) is a great concern. Sparfloxacin, clarithromycin, ciprofloxacin, and doxycycline might be more suitable for people with biovar 1 infection. Biotyping may facilitate clinical drug use and help avoid the emergence of drug-resistant strains.

Spectroscopic inspection, DFT analysis, biological evaluation and molecular docking studies of new 2-(phenylamino)acetohydrazide hydrazone based- transition metal complexes

The binuclear Pd(II) and mononuclear Zn(II), Ru(III) and Pt(IV) chelates were synthesized based on new hydrazone ligand derived from 2-(phenylamino)acetohydrazide and 3-Acetyl-2-hydroxy-6-methyl-4H-pyran-4-one (dehydroacetic acid DHA) (H2L). Variable characterization tools were used to confirm the exact structures. Spectral data show that (H2L) ligand acts as monobasic tridentate with ONO donor form. UV–Vis absorption spectroscopy and magnetic moment measurements demonstrated that the Ru(III) and Pt(IV) chelates possess an octahedral environment while Zn(II) and Pd(II) chelates possess square planar environment. The geometry of each complex was optimized using DFT calculation. The stability of the compounds was elucidated by the TGA technique. Antimicrobial activity of the compounds was evaluated and the results showed that the complexes demonstrated superior inhibitory action to ligand and display excellent antimicrobial activities against the tested microorganisms. Zn(II) mononuclear chelate showed the greatest effect against both types of bacterial strains. Antiviral activity was evaluated against Coxsackie virus (Cox B4), Herpes simplex (HSV1) and Hepatitis AVirus(HAV). The binuclear Pd(II) chelate revealed high activity against the three studied viruses while the mononuclear Ru(III) chelate revealed similar activity against the two types only. The cytotoxicity results supported the greatest effect of Zn(II) and Pd(II) against MCF-7 type. Zn(II) chelate revealed the best result against Hep-G2 type. Finally, we can conclude that binuclear Pd(II) chelate was active against all studied disease types, while not all mononuclear chelates are active. The microbial and tumor inhibition activity was compared with the theoretical molecular docking results with the specification of the active species in the selected proteins.

Effects of Inoculation with Plant Growth-Promoting Rhizobacteria on Chemical Composition of the Substrate and Nutrient Content in Strawberry Plants Growing in Different Water Conditions

Drought presents a critical challenge to global crop production, exacerbated by the effects of global warming. This study explores the role of rhizospheric bacteria (Bacillus, Pantoea, and Pseudomonas) in enhancing the drought resistance and nutrient absorption of strawberry plants. The experimental approach involved inoculating plant roots with various strains of rhizobacteria and assessing their impact under different water potential conditions in two substrates: optimal moisture and water deficit. The results showed significant changes in the nutrient content of strawberry plants, influenced by the type of bacterial strain and moisture conditions. Phosphorus and potassium content in the leaves varied considerably, with the highest levels observed in plants inoculated with specific bacterial strains under both optimal and water-deficit conditions. Similarly, calcium and magnesium content in the leaves also changed notably, depending on the bacterial strain and moisture level. The water deficit cluster, featuring the PJ1.1, DKB63, and DKB65 strains, showed PGPR’s role in maintaining nutrient availability and plant resilience. The study demonstrates that inoculation with PGPR can markedly influence the nutrient profile of strawberry plants. These findings underscore the potential of using rhizobacteria to enhance crop resilience and nutritional status, especially in the context of increasing drought conditions due to climate change.

Elaborating the microbial mechanism of humic substance formation during lignocellulosic biomass composting by inoculation with different functional microbes

This study explored the microbial mechanism of humic substance (HS) formation in the lignocellulosic biomass composting by inoculation with different functional microbes. Typical types of functional bacterial and fungal strains with higher lignocellulose degradation characteristics were inoculated into compost. Three treatment groups were set up: uninoculated microbes (CK treatment), inoculation of Bacillus subtilis (B4 treatment) and Aspergillus fumigatus (Z1 treatment). Results showed that the HS concentration for inoculation B. subtilis and A. fumigatus increased by 15.42% and 56.31%, respectively. B. subtilis could produce phenolic metabolites, cellobiose and maltose, and then enter the tricarboxylic acid cycle, thereby releasing CO2, while A. fumigatus could promote HS formation by producing phenolic metabolites, 2,4-Di-tert-butylphenol, cellobiose, maltose, glucose, galactose, xylose, arabinose, mannose, ribose and deoxyribose. In addition, inoculating A. fumigatus enhanced the correlation among lignocellulose-degrading metabolites and HS, and increased the relative abundance and numbers of microbial hosts of lignocellulose-degrading genes, promoting the HS formation. In addition, cellulose-degrading genes and lignin-degrading genes differences were the main drivers of HS formation in the inoculated treatment groups. Soluble sugar, organic matter, lignin and pH were key drivers in influencing the lignocellulose-degrading genes. This study was important for analyzing microbial biological mechanisms of HS formation during composting.

A Review on Ecoli 0157: H7 (EHEC)

Escherichia coli O157:H7 is an important food borne and water borne pathogen is first isolated in 1982, shiga toxin. producing Ecoli O157:H7 which causes diarrhea, hemorrhagic colitis and haemolytic uremic Syndrome in humans. Haemolytic uremic. Syndrome (Hus) is a Serious condition and upto 50% of Hus patients can develop renal acute dysfunction or blood pressure. Ecoli 0157:H7 infects the alimentary tract and induces abdominal cramps with hemorrhagic diarrhea and it can be transmitted by person to person through fecal shedding and 11%. of infection are estimated. Enterotoxigenic Escherichia coli(ETEC) strain are the main cause of the diarrheal disease problems. ETEC strains are the bacteria which cause the acute watery diarrhea in chinldren. Diarrheagenic Ecoli infection are more common in Africa countries. The occurance of antimicrobial resistance depends upon the type of antimicrobialagent,bacterial strain,dose,time and mode of ministration. some of Ecoli 0517:H7 occurs after taking the undercooked meat or deficiency pasteurized dairy products. And some of Ecoli 0157:H7 occurs due ro exposal to contaminated water from potable drinking sources,pools and lakes and foods such as inappropriate washed leafy green vegetables and fruits,apple juice and direct contact with contaminated animals. Ecoli 0157:H7 shiga toxin causes leukocyte aggregation,platelet aggregation,microthrombin formation, apoptosis of affected cells ,renal dysfunction. shiga toxin not only effect kidney but it can also effect in diffuse vasculitic injuries which cause the effect on multiple organ system and organ failure.

Nanocrystalline Co/Ga substituted CuFe2O4 magnetic nanoferrites for green hydrogen generation

The research study on the design of cobalt and gallium substituted copper nanoferrites through sol-gel auto-combustion were testify to check the photocatalytic/electrocatalytic water splitting efficiency of prepared nanoferrites for hydrogen generation. XRD study confirms the formation tetragonal phase for all fabricated nanoferrites with no additional phases of impurities. The tetragonal shaped grains with definite grain boundaries were observed from the FESEM study. The magnetic measurements show large hysteresis loop area with high magnetization of 58.45 emu/g for undoped copper nanoferrite. The catalytic behaviors of the fabricated nanocatalysts for the photo-catalytic H2 production was determined by using 0.079 M Na2SO3 and 0.128 M Na2S as the sacrificial agents, that give electron donor site during photo-catalysis under UV–visible irradiation. As compared to other compositions, Cu0.99Co0.01Ga0.01Fe1.99O4 (x = y = 0.01) nano photocatalyst attained the highest photocatalytic activity of 18.11 mmol gcat−1. Also, the as-synthesized photocatalysts repeatability and stability were evaluated throughout repeated runs of 4 h reaction period conducted under identical circumstances. However, all electrocatalytic analysis for hydrogen evolution reaction (HER) activity were performed using three electrode arrangements (reference, counter, and working electrodes) in 0.5 M H2SO4 electrolyte mixture. There was a rise in overpotential at 10 mA/cm−2 cathode current density as concentrations of Co/Ga for the synthesized nanoferrites were increased. It has been showed that CuFe2O4 had a high electrocatalytic HER activity. In addition, the produced nanoferrites were also examined against different type of bacterial strains, where Cu0.99Co0.01Ga0.01Fe1.99O4 indicated maximum zone of inhibition (ZOI) against Bacillus subtilis (20 ± 0.55 mm), Salmonella typhi (12 ± 0.52 mm), Escherichia coli (16 ± 0.49 mm), and Staphylococcus aureus (12 ± 0.54 mm), respectively. Hence, with these efficient overall photocatalytic and electrocatalytic water splitting traits, the prepared nanoferrites are highly useful for the green hydrogen production applications.

VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution

BackgroundPhylogenomic analysis has become an inseparable part of studies of bacterial diversity and evolution, and many different bacterial core genes have been collated and used for phylogenomic tree reconstruction. However, these genes have been selected based on their presence and single-copy ratio in all bacterial genomes, leaving out the gene's 'phylogenetic fidelity' unexamined.ResultsFrom 30,522 complete genomes covering 11,262 species, we examined 148 bacterial core genes that have been previously used for phylogenomic analysis. In addition to the gene presence and single-copy rations, we evaluated the gene's phylogenetic fidelity by comparing each gene's phylogeny with its corresponding 16S rRNA gene tree. Out of the 148 bacterial genes, 20 validated bacterial core genes (VBCG) were selected as the core gene set with the highest bacterial phylogenetic fidelity. Compared to the larger gene set, the 20-gene core set resulted in more species having all genes present and fewer species with missing data, thereby enhancing the accuracy of phylogenomic analysis. Using Escherichia coli strains as examples of prominent bacterial foodborne pathogens, we demonstrated that the 20 VBCG produced phylogenies with higher fidelity and resolution at species and strain levels while 16S rRNA gene tree alone could not.ConclusionThe 20 validated core gene set improves the fidelity and speed of phylogenomic analysis. Among other uses, this tool improves our ability to explore the evolution, typing and tracking of bacterial strains, such as human pathogens. We have developed a Python pipeline and a desktop graphic app (available on GitHub) for users to perform phylogenomic analysis with high fidelity and resolution.EM9SnsSGDMq_dsePyH_5KQVideo

Peelable Alginate Films Reinforced by Carbon Nanofibers Decorated with Antimicrobial Nanoparticles for Immediate Biological Decontamination of Surfaces.

This study presents the synthesis and characterization of alginate-based nanocomposite peelable films, reinforced by carbon nanofibers (CNFs) decorated with nanoparticles that possess remarkable antimicrobial properties. These materials are suitable for immediate decontamination applications, being designed as fluid formulations that can be applied on contaminated surfaces, and subsequently, they can rapidly form a peelable film via divalent ion crosslinking and can be easily peeled and disposed of. Silver, copper, and zinc oxide nanoparticles (NPs) were synthesized using superficial oxidized carbon nanofibers (CNF-ox) as support. To obtain the decontaminating formulations, sodium alginate (ALG) was further incorporated into the colloidal solutions containing the antimicrobial nanoparticles. The properties of the initial CNF-ox-NP-ALG solutions and the resulting peelable nanocomposite hydrogels (obtained by crosslinking with zinc acetate) were assessed by rheological measurements, and mechanical investigations, respectively. The evaluation of Minimal Inhibitory Concentration (MIC) and Minimal Bactericidal Concentration (MBC) for the synthesized nanoparticles (silver, copper, and zinc oxide) was performed. The best values for MIC and MBC were obtained for CNF-ox decorated with AgNPs for both types of bacterial strains: Gram-negative (MIC and MBC values (mg/L): E. coli-3 and 108; P. aeruginosa-3 and 54) and Gram-positive (MIC and MBC values (mg/L): S. aureus-13 and 27). The film-forming decontaminating formulations were also subjected to a microbiology assay consisting of the time-kill test, MIC and MBC estimations, and evaluation of the efficacity of peelable coatings in removing the biological agents from the contaminated surfaces. The best decontamination efficiencies against Staphylococcus aureus, Escherichia coli, and Pseudomonas aeruginosa varied between 97.40% and 99.95% when employing silver-decorated CNF-ox in the decontaminating formulations. These results reveal an enhanced antimicrobial activity brought about by the synergistic effect of silver and CNF-ox, coupled with an efficient incorporation of the contaminants inside the peelable films.

In vitro Assessment of Antibacterial Activity and Potential Genotoxic Effect of Fruit Extracts of Capparis spinosa L. Plant

This research was carried out to assess the minimum inhibitory concentration (MIC) and the genotoxic potential of ethanolic and aqueous (cold and hot) fruit extracts of Capparis spinosa L. (C. spinosa) plant against different types of bacterial strains. The antimicrobial effect of these extracts against the tested bacteria was investigated using broth microdilution method. The potential genotoxic effect was evaluated by ERIC-PCR technique. Results of the current study revealed that the MIC values of ethanolic fruit extract against the tested bacterial had a range of 12.5 mg/ml to 25 mg/ml. However, aqueous fruit extracts had an MIC with a range of 50 mg/ml to 100 mg/mL. The potential genotoxic activity of cold aqueous extract was determined according to the changes in ERIC-PCR profile of E. coli strain treated with extract in comparison to that untreated (negative control). Results of this study suggest the genotoxic effect of aqueous fruit extract on E. coli. Further research is required to assess and identify the biological molecules and their mechanisms in the context of the genotoxicity. In vivo genotoxicity assessment or with the presence of liver extract is recommended to evaluate the safety of using fruits for therapeutic purposes and a valuable nutrient source.

Comparison between the Nature and Activity of Silver Nanoparticles Produced by Active and Inactive Fungal Biomass Forms on Cervical Cancer Cells

Silver nanoparticles (SNPs) can be produced by active and inactive forms of biomass, but their properties have not been compared. Recent research is attempting to reveal their differences in shape, size, amount, antibacterial activity, cytotoxicity, and apoptosis induction. The biomass of Fusarium oxysporum was divided into four groups and pretreated in the following devices: room temperature (RT) and refrigerator (for preparation of active biomass forms), autoclave, and hot air oven (for preparation of inactive biomass forms). Samples were floated in ddH2O, and SNPs were produced after the addition of 0.1699 g/L AgNO3 in the ddH2O solution. SNP production was confirmed by visible spectrophotometry, transmission electron microscopy (TEM) and X-ray diffraction (XRD). SNPs were washed, and their concentration was determined by measuring atomic emission spectroscopy with inductively coupled plasma (ICP-OES). For antibacterial activity, the plate-well diffusion method was used. MTT and Annexin V-FITC/propidium iodide assays were used for cytotoxicity and apoptosis induction, respectively. The maximum absorbance peaks for SNPs pretreated in RT, refrigerator, autoclave, and hot air oven were 404, 402, 412, and 412 nm, respectively. The SNPs produced were almost the same shape and size, and the XRD results confirmed the presence of SNPs in all samples. Due to the differences in the type of bacterial strains used, the SNPs produced showed some differences in their antibacterial activity. The MTT assay showed that the amounts of SNPs in their IC50 dose based on the results of ICP-OES were 0.40, 0.45, 0.66, and 0.44 ppm for the samples pretreated in the hot air oven, autoclave, and refrigerator, and RT, respectively. The apoptosis induction results showed that the biologically engineered SNPs induced more apoptosis (about 34.25%) and less necrosis (about 13.25%). In conclusion, the type and activity of SNPs produced by the active and inactive forms of fungal biomass did not change. Therefore, use of the inactive form of biomass in the future to avoid environmental contamination is reccommended.

Synthesis, Antioxidant and Antimicrobial Activity of Calix[4]Arene Acetanilide Derivative

The current work explores the antioxidant and antimicrobial activity of a newly synthesized calix[4] arene acetanilide derivative (3), which was synthesized through Mannich reaction by the treatment of calix[4] arene with acetanilide, formaldehyde and acetic acid in tetrahydrofuran, The antioxidant activity was determined by using DPPH method. Results show that the new synthesized compound 3 has good antioxidant activity. The antimicrobial activity of 3 was staunched against different types of microorganisms, i.e. gram-negative and gram-positive bacterial strains (Escherichia Coli ATCC 8739 and Staphylococcus Aureus ATCC 10231) along with a fungus (Aspergillus Niger ATCC 16405). A suitable agar medium (Mueller Hinton agar) was applied for the growth of microorganisms. Kirby-Bauer well agar diffusion method was used to check the antimicrobial activity. The bacterial strains zone has been observed in between 250–4000 µg/ml. It is noticed that compound 3 has very good effect against fungus A niger as compared to bacterial strains. Its minimum inhibitory concentration (MIC) against A. niger, S. aureus and E. coli is found to be 250, 500 and 1000 µg/mL, respectively. Consequently, the study has been compared with the reported calix[4] arene derivatives and it has been revealed that the compound 3 is a good antimicrobial agent. Hence, it could be inferred that compound 3 is considerably effective against selected microorganisms and may be used as a medicine in near future and beneficial for the human.

Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Molecular Typing of Acinetobacter baumannii in Comparison with Orthogonal Methods.

Colonization and subsequent health care-associated infection (HCAI) with Acinetobacter baumannii are a concern for vulnerable patient groups within the hospital setting. Outbreaks involving multidrug-resistant strains are associated with increased patient morbidity and mortality and poorer overall outcomes. Reliable molecular typing methods can help to trace transmission routes and manage outbreaks. In addition to methods deployed by reference laboratories, matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) may assist by making initial in-house judgments on strain relatedness. However, limited studies on method reproducibility exist for this application. We applied MALDI-TOF MS typing to A. baumannii isolates associated with a nosocomial outbreak and evaluated different methods for data analysis. In addition, we compared MALDI-TOF MS with whole-genome sequencing (WGS) and Fourier transform infrared spectroscopy (FTIR) as orthogonal methods to further explore their resolution for bacterial strain typing. A related subgroup of isolates consistently clustered separately from the main outbreak group by all investigated methods. This finding, combined with epidemiological data from the outbreak, indicates that these methods identified a separate transmission event unrelated to the main outbreak. However, the MALDI-TOF MS upstream approach introduced measurement variability impacting method reproducibility and limiting its reliability as a standalone typing method. Availability of in-house typing methods with well-characterized sources of measurement uncertainty could assist with rapid and dependable confirmation (or denial) of suspected transmission events. This work highlights some of the steps to be improved before such tools can be fully integrated into routine diagnostic service workflows for strain typing. IMPORTANCE Managing the transmission of antimicrobial resistance necessitates reliable methods for tracking outbreaks. We compared the performance of MALDI-TOF MS with orthogonal approaches for strain typing, including WGS and FTIR, for Acinetobacter baumannii isolates correlated with a health care-associated infection (HCAI) event. Combined with epidemiological data, all methods investigated identified a group of isolates that were temporally and spatially linked to the outbreak, yet potentially attributed to a separate transmission event. This may have implications for guiding infection control strategies during an outbreak. However, the technical reproducibility of MALDI-TOF MS needs to be improved for it to be employed as a standalone typing method, as different stages of the experimental workflow introduced bias influencing interpretation of biomarker peak data. Availability of in-house methods for strain typing of bacteria could improve infection control practices following increased reports of outbreaks of antimicrobial-resistant organisms during the COVID-19 pandemic, related to sessional usage of personal protective equipment (PPE).