Soil Bacterial Community Research Articles

Characteristic Analysis of the Soil Bacterial Community Structure of Dendrocalamus brandisii from Seven Geographical Provenances in Yunnan Province

Soil is the basis of bamboo growth and quality formation of bamboo shoots and has an important contribution to the sustainable development of agriculture. To this end, We studied the soil properties and microbial communities of Dendrocalamus brandisii by collecting twenty-one soil samples from its seven typical geographic provenances in Yunnan Province, China. Bacterial 16S rRNA gene amplicons were used to detect soil bacteria and predict bacterial functions using Tax4Fun. The results indicated that the soil bacterial diversity indices (ACE, Chao1, Simpson, and Shannon) were significantly different among different geographical provenances. The dominant bacterial groups at the phylum level in all seven regions were Proteobacteria (19.78~29.06%), Actinobacteria (13.53~30.01%), Chloroflexi (8.03~31.47%), and Acidobacteria (7.12~19.17%), with markedly different constitution proportions. Total phosphorus, available potassium, and pH were the main environmental factors affecting soil bacterial communities. There were significant differences in the secondary metabolic pathways and phenotypes of soil bacterial functions, exhibiting a diversity of functions. The geographical variables of the soil bacterial community in D. brandisii varied with spatial scales. Environmental factors such as available potassium (AK), pH, and total nitrogen (TN) have an impact on soil bacterial communities.

Polyvinyl chloride microplastics disseminate antibiotic resistance genes in Chinese soil: A metagenomic analysis

The widespread prevalence of microplastics (MPs) in the environment poses concerns as they are vectors of antibiotic resistance genes (ARGs). The relationships between antibiotic resistomes and MPs remain unexplored in soil which was considered as the reservoirs of MPs and ARGs. This study investigated the effects of polyvinyl chloride (PVC) MPs on soil bacterial communities and ARG abundance which soil samples sourced from 20 provinces across China. We found that PVC significantly influences soil bacterial community structure and ARG abundance. Structural equation modeling revealed that PVC alters soil characteristics, ultimately affecting soil bacterial communities, including ARG-containing bacterial hosts, and the relative abundance of ARGs. This study enhances our understanding of how MPs influence the proliferation and hosts of ARGs within diverse soil environments, offering crucial insights for future strategies in plastic management and disposal.

Bacillus subtilis B55 degraded the ferulic acid and p-coumaric acid and changed the soil bacterial community in soils.

This study aimed to assess the effects of phenolic acid-degrading bacteria strains on phenolic acid content, plant growth, and soil bacterial community in phenolic acid-treated soils. The strain of interest coded as B55 was isolated from cucumber root litter, and its degradation rates of ferulic acid and p-coumaric acid were 81.92% and 72.41% in Luria-Bertani solution, respectively, and B55 was identified as Bacillus subtilis. B55 had plant growth-promoting attributes, including solubilization of inorganic phosphate and production of siderophore and indole acetic acid. Both ferulic acid and p-coumaric acid significantly restrained an increase in cucumber seedling dry biomass, while the B55 inoculation not only completely counteracted the damage of phenolic acids to cucumber seedlings and decreased the content of ferulic acid and p-coumaric acid in soil, but also promoted cucumber seedlings growth. Amplicon sequencing found that B55 inoculation changed the cucumber rhizosphere bacterial community structure and promoted the enrichment of certain bacteria, such as Pseudomonas, Arthrobacter, Bacillus, Flavobacterium, Streptomyces, and Comamonas. B55 not only promoted cucumber seedling growth, and decreased the content of ferulic acid and p-coumaric acid in soil, but it also increased the relative abundance of beneficial microorganisms in the cucumber rhizosphere.

The contribution of swine wastewater on environmental pathogens and antibiotic resistance genes: Antibiotic residues and beyond

Swine wastewater application can introduce antibiotics, antibiotic resistance genes (ARGs) into environments. Herein, the full-scale transmission of antibiotics, ARGs and their potential carriers from an intensive swine feedlot to its surroundings were explored. Results showed that lincomycin and doxycycline hydrochloride were dominant antibiotics in this ecosystem. Lincomycin concentration were strongly associated with soil bacterial communities. According to the risk quotient (RQ), lincomycin was identified as posing higher ecological risk in aquatic environments. ARGs and mobile genetic elements (MGEs) abundance in wastewater were reduced after anaerobic treatment. Notably, ARGs composition of environmental samples were clustered into two groups based on if they were directly affected by the wastewater. However, there were no remarkable difference of ARGs abundance among environmental samples. The total abundance of ARGs was positively related to that of MGEs. Pathogens Escherichia coli and Enterococcus revealed strong connection with qnrS, tet and sul. Overall, this study highlights the importance of responsible antibiotics use in livestock production and appropriate treatment technology before agricultural application and discharge.

Responses of Methane Emission and Bacterial Community to Fertilizer Reduction Plus Organic Materials over the Course of an 85-Day Leaching Experiment

Methane produced from paddy fields has a negative impact on global climate change. However, the role of soil bacterial community composition in mediating methane (CH4) emission from waterlogged paddy soil using the column experiment is poorly known. In the present study, various fertilization treatments were adopted to investigate the effects of fertilizer reduction combined with organic materials (CK: control; CF: conventional fertilization; RF: 20% fertilizer reduction; RFWS: RF plus wheat straw amendment; RFRS: RF plus rapeseed shell amendment; RFAS: RF plus astragalus smicus amendment) on CH4 emission and soil bacterial community during an 85-day leaching experiment. We hypothesized that the fertilizer reduction plus the organic materials could enrich the bacterial communities and increase CH4 emission. The average CH4 flux varied from 0.03 μg m−2 h−1 to 76.19 μg m−2 h−1 among all treatments in the nine sampling times, which may account for the experimental conditions such as air temperature, moisture, and anthropogenic factors. In addition, high-throughput sequencing was utilized to investigate the alteration of the soil bacterial community structure. It was revealed that the diversity and composition of the bacterial community in the topsoil amended with organic materials underwent significant shifts after the 85-day leaching experiment. Proteobacteria was identified as the dominant phylum of the soil bacteria, with an average proportion of 35.2%. For Firmicutes, the proportion of RFRS (11%) was higher than that in the CK (8%), RF (8%), RFWS (7%), RFAS (6%), and CF (5%) treatments. Additionally, Gammaproteobacteria and Alphaproteobateria were supposed to be the major class bacterial communities, with average proportions of 12.8% and 12.2%, respectively. For the RFWS treatment, the contribution of Alphaproteobateria was the highest among all the bacterial relative abundance. According to the correlation heatmap analysis, the top ten bacterial communities were positively related to soil microbial biomass carbon (MBC) and ammonia nitrogen (NH4+-N) (p < 0.01). The findings also indicated that the RFRS treatment was the favorable management to alleviate CH4 emission during an 85-day leaching experiment or possibly in paddy production. Collectively, these results predict that the impacts of different treatments on CH4 production are strongly driven by soil microbial communities and soil properties, with soil bacteria being more prone to the crop residue degradation stage and more sensitive to soil properties. The discoveries presented in this study will be useful for assessing the efficacy and mechanisms of organic material amendments on CH4 emissions in paddy soil.

Wheat cover crop accelerates the decomposition of cucumber root litter by altering the soil microbial community

Cover cropping is a diversifying agricultural practice that can improve soil structure and function by altering the underground litter diversity and soil microbial communities. Here, we tested how a wheat cover crop alters the decomposition of cucumber root litter. A three-year greenhouse litterbag decomposition experiment showed that a wheat cover crop accelerates the decomposition of cucumber root litter. A microcosm litterbag experiment further showed that wheat litter and the soil microbial community could improve cucumber root litter decomposition. Moreover, the wheat cover crop altered the abundances and diversities of soil bacterial and fungal communities, and enriched several putative keystone OTUs, such as Bacillus spp. OTU1837 and Mortierella spp. OTU1236, that were positively related to the mass loss of cucumber root litter. The representative bacterial and fungal strains B186 and M3 were isolated and cultured. In vitro decomposition tests demonstrated that both B186 and M3 had cucumber root litter decomposition activity and a stronger effect was found when they were co-incubated. Overall, a wheat cover crop accelerated cucumber root litter decomposition by altering the soil microbial communities, particularly by stimulating certain putative keystone taxa, which provides a theoretical basis for using cover crops to promote sustainable agricultural development.

Impact of floods and landslides on rhizosphere bacterial communities: a high-throughput 16S rRNA gene sequencing study.

This study investigates the diversity and composition of soil bacterial communities in the rhizosphere of Attapadi and Nelliyampathy, prominent hill stations in Palakkad district, Kerala, India. The persistent flooding and landslides in 2018 and 2019 significantly impacted agricultural productivity in these regions. Utilizing high-throughput 16S rRNA gene sequencing (Illumina MiSeq), we conducted a comprehensive analysis of soil samples. Correlative assessments between soil parameters and microbial relative abundance at the phylum level revealed noteworthy positive associations. Notably, nitrogen (N) exhibited a positive relation with Crenarchaeota, Chloroflexi, Actinobacteriota, and Acidobacteriota; pH correlated with Firmicutes; organic carbon (OC) with WPS-2; and phosphorous with Proteobacteria. A total of 31,402 operational taxonomic units (OTUs) were identified, with the highest feature counts observed in undisturbed soils from Attapadi (AUD) and Nelliyampathy (NUD) (13,007 and 12,915, respectively). Disturbed soils in Nelliyampathy (ND) and Attapadi (AD) displayed a substantial decline in microbial diversity and composition, harbouring 1409 and 4071 OTUs, respectively. Alpha and beta diversity indices further underscored the more severe impairment of ND soils compared to AD soils. Interestingly, a majority of ND samples were landslide-affected (four out of five), while flood-affected soils accounted for four out of six AD samples. This indicates that landslides exert a more pronounced impact on microbial diversity and composition than floods. The observed decline in microbial count, composition, and diversity, even after 2years of the disaster, raises concerns about potential threats to agricultural output. The findings emphasize the need for corrective measures, including the incorporation of microbial inoculum, to restore soil fertility in post-disaster landscapes.

Effect of long-term liquid dairy manure application on activity and structure of bacteria and archaea in no-till soils depends on plant in development.

This study aimed to evaluate the impact of long-term liquid dairy manure (LDM) application on the activity and structure of soil bacterial and archaea communities in two cropping seasons over 1year of a no-till crop rotation system. The experiment was run in a sandy clay loam texture Oxisol, in Brazil, including LDM doses of 60, 120, and 180 m3ha-1year-1, installed in 2005. Soil sampling was conducted during spring 2018 and autumn 2019 at 0-10-cm depth. Microbial biomass carbon and nitrogen, 16S rRNA gene sequencing, microbial respiration and quotient were performed. Over the 14-year period, LDM application increased soil microbial community activity. Analysis of 16S rRNA gene sequencing revealed dominance by Proteobacteria, Acidobacteria, and Actinobacteria phyla (67% in spring and 70% in autumn). Genera Pirulla and Nitrososphaera showed enrichment at LDM doses of 120 and 180 m3ha-1year-1 doses, respectively. During spring, following black oat cropping, shifts in the relative abundance of Bacteroidetes, Proteobacteria, Firmicutes, Gemmatimonadetes, Verrucomicrobia, Chloroflexi, Actinobacteria, and AD3 phyla were observed due to LDM application, correlating with soil chemical indicators such as pH, K, Ca, Mn, and Zn. Our findings indicate that plant development strongly influences microbial community composition, potentially outweighing the impact of LDM. Our findings indicate that the application of liquid dairy manure alters the soil bacterial activity and community; however, this effect depends on the developing plant.

Spatial heterogeneity of resource availability drives soil bacterial community assembly along the sandy coast of Southern China

Resources scarcity is prevalent in natural microbial communities, affecting both biodiversity and coexistence. However, its intricate impacts on community assembly remain incompletely understood. In this study, we examined the bacterial community assembly processes in low-resource soil patches along the sandy coast of Southern China, focused on the relative importance of abiotic and biotic factors. Our study revealed a slightly decreasing trend in bacterial community similarity with increasing geographic distance, whereas the spatial heterogeneity of soil resource availabilities, including total nitrogen (TN), ammonium (NH4+-N), and total phosphorus (TP), explained 75 % of the total variation in the soil bacterial community. Nitrogen was identified as the primary limiting resource, playing a key role in shaping the composition of bacterial communities. Notably, elevated N availability did not alleviate N limitations or promote biodiversity. Instead, it led to deterministic community assembly processes by increasing the overall demand for N and intensifying negative biological interactions among taxa. These processes favored the selection of specific communities dominated by highly competitive species with overlapping niches. Our findings offer novel insights into the biogeographic patterns of soil bacterial communities, highlighting how resource availability shapes their compositions and has potential ecological implications, including effects on seedling establishment and the resilience of belowground communities to disturbances.

Interactions between Sugarcane Leaf Return and Fertilizer Reduction in Soil Bacterial Network in Southern China Red Soil.

Microbes may play an important role in the sugarcane leaf degradation and nutrient conversion process. Soil bacterial communities are more or less involved in material transformation and nutrient turnover. In order to make better use of the vast sugarcane leaf straw resources and reduce the overuse of chemical fertilizers in the subtropical red soil region of Guangxi, a pot experiment, with three sugarcane leaf return (SLR) amounts [full SLR (FS), 120 g/pot; half SLR (HS), 60 g/pot; and no SLR (NS)] and three fertilizer reduction (FR) levels [full fertilizer (FF), 4.50 g N/pot, 3.00 g P2O5/pot, and 4.50 g K2O/pot; half fertilizer (HF), 2.25 g N/pot, 1.50 g P2O5/pot, and 2.25 g K2O/pot; and no fertilizer (NF)], was conducted to assess the interactions of different SLR amounts and chemical FR levels in the soil bacterial network and the relationship between the soil properties and bacterial network by using Illumina Miseq high-throughput sequencing technology. According to the results of the soil bacterial community compositions and diversity, the soil bacterial network was changed during maize growth. SLR exerted a stronger effect on soil bacterial function than FR. Returning the sugarcane leaf to the field increased the diversity of the soil bacteria network. The bacterial communities were consistently dominated by Acidobacteria, Actinobacteria, and Bacteroidetes across all treatments, among which Actinobacteria was the most abundant bacteria type by almost 50% at the phylum level. The analysis results of the experimental factor on maize growth showed that the effect of SLR was lower than that of FR; however, this was opposite in the soil bacterial community structure and diversity. The soil bacterial network was significantly correlated with the soil total K, available N and organic matter contents, and EC. The soil bacteria community showed different responses to SLR and FR, and the FF in combination with FS partly increased the complexity of the soil bacteria network, which can further benefit crop production and soil health in the red soil region.

Regulating Leaf Photosynthesis and Soil Microorganisms through Controlled-Release Nitrogen Fertilizer Can Effectively Alleviate the Stress of Elevated Ambient Ozone on Winter Wheat.

The mitigation mechanisms of a kind of controlled-release nitrogen fertilizer (sulfur-coated controlled-release nitrogen fertilizer, SCNF) in response to O3 stress on a winter wheat (Triticum aestivum L.) variety (Nongmai-88) were studied in crop physiology and soil biology through the ozone-free-air controlled enrichment (O3-FACE) simulation platform and soil microbial metagenomics. The results showed that SCNF could not delay the O3-induced leaf senescence of winter wheat but could enhance the leaf size and photosynthetic function of flag leaves, increase the accumulation of nutrient elements, and lay the foundation for yield by regulating the release rate of nitrogen (N). By regulating the soil environment, SCNF could maintain the diversity and stability of soil bacterial and archaeal communities, but there was no obvious interaction with the soil fungal community. By alleviating the inhibition effects of O3 on N-cycling-related genes (ko00910) of soil microorganisms, SCNF improved the activities of related enzymes and might have great potential in improving soil N retention. The results demonstrated the ability of SCNF to improve leaf photosynthetic function and increase crop yield under O3-polluted conditions in the farmland ecosystem, which may become an effective nitrogen fertilizer management measure to cope with the elevated ambient O3 and achieve sustainable production.

Dose Effect of Polyethylene Microplastics Derived from Commercial Resins on Soil Properties, Bacterial Communities, and Enzymatic Activity.

Soils are the largest reservoir of microplastics (MPs) on earth. Since MPs can remain in soils for a very long time, their effects are magnified. In this study, different concentrations of polyethylene (PE) MPs derived from commercial resins (0%, 1%, 7%, and 14%, represented as MP_0, MP_1, MP_7, and MP_14) were added to soils to assess the changes in the soils' chemical properties, enzyme activities, and bacterial communities during a 70-day incubation period. The results show that PE MP treatments with low concentrations differed from other treatments in terms of exchangeable Ca and Mg, whereas at high concentrations, the pH and availability of phosphate ions differed. Fluorescein diacetate (FDA), acid phosphatase (ACP), and N-acetyl-β-d-glucosaminidase (NAG) enzyme activities exhibited a dose-related trend with the addition of the PE MPs; however, the average FDA and ACP activities were significantly affected only by MP_14. Changes in the microbial communities were observed at both the phylum and family levels with all PE MP treatments. It was revealed that even a low dosage of PE MPs in soils can affect the functional microbes, and a greater impact is observed on those that can survive in polluted environments with limited resources.

Mechanisms of N-doped microporous biochar decreased Cd transition in rhizosphere soils and its impact on soil bacterial community composition

Soil cadmium (Cd) contamination has garnered considerable attention. This study employed batch sorption experiments and rhizobox experiments to examine the impact of nitrogen-doped microporous biochar (NBB) on the temporal and spatial distribution of Cd in the rhizosphere of rice plants, with the aim of elucidating the underlying mechanisms. The results indicated that the adsorption of Cd(II) onto NBB was predominantly governed by chemical reactions. When applied to soil, the NBB significantly hindered the migration of Cd from the bulk soil to the rhizosphere. Additionally, the application of NBB decreased the redox potential (Eh) in the rhizosphere soil and increased the relative abundance of Anaeromyxobacteraceae, Geobacteraceae, Desulfurisporaceae, and Syntrophomonadaceae, which could facilitate the reduction of soil Cd availability. Furthermore, the NBB2 treatment encouraged the formation of iron plaque on the root surface, thereby limiting the uptake of Cd from the soil into the root system. Moreover, the N-doped microporous biochar treatment resulted in lower Cd levels in the stele of root, an effect that was associated with increased sulfur (S) content in the stele and epidermis, suggesting a potential role for S in Cd sequestration. Ultimately, the application of N-doped microporous biochar resulted in diminished Cd accumulation in the rice tissues.

Diversity and Structure of Soil Bacterial Communities in the Area of Non-ferrous Metal Plant Revealed by 16S rRNA Gene Retrieval

The goals of the study were to assess the diversity and structure of the bacterial communities within the soil depth along a gradient of heavy metal (HM) contamination and to identify indigenous bacterial species in the agricultural area of a non-ferrous metal plant KCM 2000 Group (Plovdiv) by using 16S rRNA gene retrieval. 16S rRNA gene clone libraries were constructed for nine samples, which were collected from two soil depths in June 2020. From each library, up to 100 clones were analysed and grouped into operational taxonomic units (OTUs) by restriction fragment length polymorphism (RFLP). The representatives of the OTUs were sequenced, followed by phylogenetic analysis. The results revealed that phyla Proteobacteria (11.11–71.43%) and Actinomycetota (3.57–33%) were the most abundant. Surface soils (12 phyla and 15 classes) were more diverse than subsurface ones (7 phyla and 12 classes). The lowest diversity at both phylum and class levels was calculated for the moderately contaminated soils from the two studied depths. Thirteen 16S rDNA sequences were identified to a species level, and they belonged to Proteobacteria, Actinomycetota and Firmicutes. This study highlighted that both HM contamination and soil depth caused shifts in diversity and structure of soil bacterial communities.

Impact of biochar on the degradation rates of three pesticides by vegetables and its effects on soil bacterial communities under greenhouse conditions

A 28 days pesticide degradation experiment was conducted for broccoli (Brassica oleracea L. var. italica Planch) and pakchoi (Brassica chinensis L.) with three pesticides (chlorantraniliprole (CAP), haloxyfop-etotyl (HPM), and indoxacarb (IXB)) to explore the effects of biochar on pesticide environmental fate and rhizosphere soil diversity. Rice straw biochar (RB) was applied to soil at a 25.00 t ha−1 dosage under greenhouse conditions, and its effects on the degradation of three pesticides in vegetables and in soil were investigated individually. Overall, RB application effectively facilitated CAP and HPM degradation in broccoli by 13.51–39.42% and in broccoli soil by 23.80–74.10%, respectively. RB application slowed the degradation of CAP, HPM and IXB in pakchoi by 0.00–57.17% and slowed the degradation of CAP in pakchoi by 37.32–43.40%. The results showed that the effect of RB application on pesticide degradation in crops and soil was related to biochar properties, pesticide solubility, plant growth status, and soil characteristics. Rhizosphere soil microorganisms were also investigated, and the results showed that biochar application may be valuable for altering bacterial richness and diversity. The effect of biochar application on pesticide residues in crops and soil was influenced by the vegetable variety first, and the second was pesticide characteristics. RB applied to soil at a 25.00 t ha−1 dosage under greenhouse conditions is recommended for broccoli production to ensure food safety. Our results suggested that biochar application in soil could reduce pesticide non-point source pollution, especially for highly soluble pesticides, and could affect soil microorganisms.

Manure-derived black soldier fly frass enhanced the growth of chilli plants (Capsicum annuum L.) and altered rhizosphere bacterial community

Sustainable manure management is crucial for minimising environmental impacts as the livestock industry expands to meet the increasing demand for protein. Black soldier fly (Hermetia illucens L.) larvae (BSFL) farming is an emerging waste management method that efficiently processes large volumes of organic waste, including manure, to produce valuable protein, oil and chitin products. Frass, a nutrient-rich by-product of black soldier fly farming, has potential as an organic fertiliser. However, research has primarily focused on frass derived from food waste, with little exploration of manure-derived BSFL frass. This study aimed to determine whether frass derived from manure could enhance the growth of chilli (Capsicum annuum L.) over 14 weeks under controlled glasshouse conditions. The impacts of manure-derived BSFL frass on soil properties and soil bacterial communities were characterised. The results indicated that a 0.6 % w/w application rate yielded the highest chilli plant biomass, with reduced growth observed at higher rates. The enhanced growth at optimal manure-derived BSFL frass application rates was due to increased nitrogen content, whereas reduced growth at higher rates was likely caused by phytotoxicity from not completely decomposed frass. Soil microbial biomass carbon and nitrogen also increased with manure-derived BSFL frass, implying microbial carbon and nitrogen immobilisation. Additionally, the changes in pH and nutrients due to manure-derived BSFL frass caused shifts in the bacterial community in the chilli plant rhizosphere, enriching the relative abundance of bacteria with potential growth-promoting properties. This study highlights the potential of integrating manure into black soldier fly waste management processes, demonstrating that manure-derived BSFL frass can be used as an organic fertiliser with circular economy benefits.

The Effects of Mixed Robinia pseudoacacia and Quercus variabilis Plantation on Soil Bacterial Community Structure and Nitrogen-Cycling Gene Abundance in the Southern Taihang Mountain Foothills.

Mixed forests often increase their stability and species richness in comparison to pure stands. However, a comprehensive understanding of the effects of mixed forests on soil properties, bacterial community diversity, and soil nitrogen cycling remains elusive. This study investigated soil samples from pure Robinia pseudoacacia stands, pure Quercus variabilis stands, and mixed stands of both species in the southern foothills of the Taihang Mountains. Utilizing high-throughput sequencing and real-time fluorescence quantitative PCR, this study analyzed the bacterial community structure and the abundance of nitrogen-cycling functional genes within soils from different stands. The results demonstrated that Proteobacteria, Acidobacteria, and Actinobacteria were the dominant bacterial groups across all three forest soil types. The mixed-forest soil exhibited a higher relative abundance of Firmicutes and Bacteroidetes, while Nitrospirae and Crenarchaeota were most abundant in the pure R. pseudoacacia stand soils. Employing FAPROTAX for predictive bacterial function analysis in various soil layers, this study found that nitrogen-cycling processes such as nitrification and denitrification were most prominent in pure R. pseudoacacia soils. Whether in surface or deeper soil layers, the abundance of AOB amoA, nirS, and nirK genes was typically highest in pure R. pseudoacacia stand soils. In conclusion, the mixed forest of R. pseudoacacia and Q. variabilis can moderate the intensity of nitrification and denitrification processes, consequently reducing soil nitrogen loss.

Changes in soil properties and microbial activity unveil the distinct impact of polyethylene and biodegradable microplastics on chromium uptake by peanuts.

Microplastics (MPs) are emerging persistent pollutants, and heavy metals are typical environmental pollutants, with their coexistence potentially compounding pollution and ecological risks. However, the interactive impacts and the relevant mechanisms of heavy metal and different types of MPs in plant-soil systems are still unclear. This study investigated the differential impacts of polyethylene MPs (PE MPs) and biodegradable polybutylene adipate MPs (PBAT MPs) on chromium (Cr) uptake in peanuts, focusing on plant performance and rhizosphere soil microenvironment. Compared with nondegradable PE-MPs, biodegradable PBAT MPs produced less significant influences on plant phytotoxicity, soil Cr bioavailability, and soil properties such as pH, CEC, DOC, and MBC, with the exception of MBN in Cr-contaminated soils. Compared to the control, soil pH and cation exchange capacity (CEC) decreased by MPs, while soil-soluble carbon (DOC), microbial biomass carbon, and nitrogen (MBC and MBN) increased by MPs. Compared to the control, soil-bioavailable Cr increased by 11.8-177.8% under PE MPs treatments, while increased by 5.1-156.9% under PBAT MPs treatments. The highest Cr content in shoots and roots was observed at 500.0mg·kg-1 Cr level, which increased by 53.1% and 79.2% under 5% PE MPs treatments, respectively, as well as increased by 38.3% and 60.4% under 5% PBAT MPs treatments, respectively, compared with the control. The regression path analysis indicated that pH, MBC, MBN, and soil-bioavailable Cr played a vital role in the changes of soil properties and Cr uptake by peanuts induced by MPs. Soil bacterial community analysis revealed that Nocardioides, Proteobacteria, and Sphingomonas were reduced by the inhibition of MPs, which affected Cr uptake by peanuts. These results indicated that the peanut soil microenvironment was affected by PBAT and PE MPs, altering the Cr bioavailability and plant Cr uptake in Cr-contaminated soil.

Impact of Transgenic Maize Ruifeng125 on Diversity and Dynamics of Bacterial Community in Rhizosphere Soil.

With the development of commercialized planting of genetically modified crops, their ecological security risks remain a key topic of public concern. Insect-resistant genetically modified maize, Ruifeng125, which expresses a fusion Bt protein (Cry1Ab-Cry2Aj), has obtained the application safety certificate issued by the Chinese government. To determine the effects of Ruifeng125 on the diversity and dynamics of bacterial communities, the accumulation and degradation pattern of the fusion Bt protein in the rhizosphere soil of transgenic maize were detected. Results showed that the contents of Bt protein varied significantly at different developmental stages, but after straw was returned to the field, over 97% of Bt proteins were degraded quickly at the early stages (≤10 d) and then they were degraded at a relatively slow rate. In addition, the variations in bacterial community diversity in the rhizosphere soil were detected by 16S ribosomal RNA (Rrna) high-throughput sequencing technology. A total of 44 phyla, 435 families, and 842 genera were obtained by 16S rRNA sequencing, among which Proteobacteria, Actinobacia, Acidobacter Acidobacterium, and Chloroflexi were the dominant taxa. At the same developmental stage, no significant differences in soil bacterial diversity were detected between Ruifeng125 and its non-transgenic control variety. Further analysis revealed that developmental stage, rather than the transgenic event, made the greatest contribution to the changes in soil microbial diversity. This research provides important information for evaluating the impacts of Bt crops on the soil microbiome and establishes a theoretical foundation for their environmental safety assessment.

Plateau zokor disturbance enhances soil bacterial diversity and reduces network complexity

Rodent disturbances are considered as the key factors that affect grassland ecological restoration worldwide. Although the impact of rodent disturbances on plant diversity and ecosystem functions has been extensively studied, our understanding of how such activities shape soil bacterial community networks and their functional roles remains limited. In this study, we employed 16S rRNA sequencing to investigate soil bacterial communities between undisturbed alpine meadow and zokor mounds at different successional stages. Additionally, we analyzed the co-occurrence networks and potential functions within the alpine meadow ecosystem. The results revealed that (1) the disturbance by plateau zokors altered the soil bacterial community structure, increased bacterial diversity and reduced network complexity. Also, there were synergistic interactions among key species in the soil bacterial co-occurrence network; (2) soil organic carbon (SOC) and total nitrogen (TN) were identified as the key environmental variables that shape soil bacterial communities; (3) functional predictions based on FAPROTAX indicated that the disturbance by plateau zokors significantly affected the functional groups involved in carbon (C) and nitrogen (N) cycling. Overall, these findings significantly enhance our understanding of how small mammal activities influence the soil nutrient cycling and bacterial community in the Qinghai-Tibet Plateau (QTP) alpine meadow.