Bacterial Carbon Research Articles

Scalable and Robust Bacterial Cellulose Carbon Aerogels as Reusable Absorbents for High-Efficiency Oil/Water Separation.

Efficient selective separation of oils or organic pollutants from water is important for ecological, environmental conservation and sustainable development. Various absorption methods have emerged; the majority of them still suffer from defects including low removal efficiency, a complicated preparation process, and high cost. Herein, we present a highly porous and mechanical resilient bacterial cellulose (BC) carbon aerogel directly from BC hydrogel via facile directional freeze-drying and high-temperature carbonization. The resultant BC carbon aerogel showed excellent mechanical compressibility (maximal height compression ∼99.5%) and elastic recovery due to the porous structure. Taking advantages of the high thermal stability and superhydrophobicity, the BC carbon aerogel was directly used as a versatile adsorbent for oil/water separation. The result demonstrated that the BC carbon aerogel showed super oil/water separation selectivity with the oil absorption capacity as high as 132-274 g g-1. More importantly, the BC carbon aerogel adsorbent can be reused by a simple absorption/combustion method and still keep high-efficiency oil absorption capacity and excellent superhydrophobicity after 20 absorption/combustion cycles, displaying recyclability and robust stability. In sum, the BC carbon aerogel introduced here is easy to fabricate, ecofriendly, highly scalable, low cost, mechanically robust, and reusable; all of these features make it highly attractive for oil/water separation application.

Potential mechanisms responsible for occurrence of core oxygen minimum zone in the north-eastern Arabian Sea

The thickness of oxygen minimum zone (OMZ) is estimated for the first time using dissolved oxygen (DO) profiles obtained from the Biogeochemical Argo floats collected between 2013 and 2019 in the Arabian Sea. The depth of upper boundary of the OMZ varied narrowly between 70 and 220 m in the entire Arabian Sea whereas the lower boundary of OMZ significantly deepened from south (500 m) to northern Arabian Sea (1200 m). The thickness of OMZ decreased from north (>1050 m) to south (400 m) with the thickest OMZ in the northeastern Arabian Sea (950–1050 m). The thick OMZ in the northeastern Arabian Sea is associated with low concentration of depth integrated Chlorophyll-a, primary production in the upper 100 m and sinking carbon fluxes at 100 m depth than other regions. The particle back-scatter, proxy for particulate organic matter, is higher in the northeastern than other regions in the Arabian Sea. The high particle back-scatter data is found in the core of OMZ and it is increased from shelf to offshore indicating that cross-shelf transport of organic matter may be supporting bacterial carbon demand in the OMZ in the northeastern Arabian Sea. The eastward shift in the OMZ is attributed to weak mixing, high penetration time of intermediate water masses, and organic matter transport from the shelf region. Numerical models estimated negligible changes in DO in the OMZ since past several decades, whereas long-term observational data indicates decline in DO levels in the OMZ. Such contrasting results may be caused by lack of cross-shelf transport of organic matter in the models. Though this study identifies the occurrence of cross-shelf transport, the nature, quality and composition of organic matter transported from shelf is unknown. Nevertheless, inclusion of such processes in the models may improve predictability of possible changes in OMZ in future in the Arabian Sea.

Dissolved and Particulate Primary Production and Subsequent Bacterial C Consumption in the Southern East China Sea

Dissolved primary production (DPP), particulate primary production (PPP), and the subsequent bacterial production (BP) and respiration (BR) were reported for the first time in the NW Pacific. The study area of the subtropical southern East China Sea covers different water types, including oligotrophic Kuroshio and Taiwan Strait waters, as well as nutrient-rich China coastal and upwelled Kuroshio subsurface waters. On an areal basis, DPP and PPP ranged from 67-1649 and 160-1182 mgC m-2 d-1, respectively, showing high values in the upwelling area. The contribution of DPP to total primary production (percent extracellular release; PER) averaged 40.8+/-12.2%with >50% in the upwelling stations. The BP and BR ranged from 48-245 and 709-2822 mgC m-2 d-1, respectively, showing patterns similar to those of primary production. Bacterial growth efficiency (BGE) averaged 5.7+/-1.4%, representing in the lower end of the global ocean values. Phytoplankton and bacteria were well coupled in the upwelling area, whereas primary production could not sustain the bacterial carbon demand (BCD) at other stations. The slope of the log-log relationship between DPP and PPP was >1, indicating that the microbial loop may receive less organic carbon supply in the future warmer, less productive ocean.

A marine carbon monoxide (CO) model with a new parameterization of microbial oxidation

Traditionally, marine carbon monoxide (CO) models assume that the microbial oxidation of CO is only dependent on the concentration of CO in the water column. However, CO oxidation rates in the ocean have been reported to vary up to two orders of magnitude both spatially and temporally. Here, we developed a new model assuming that CO microbial oxidation is dependent on bacterial carbon biomass other than CO concentration. In addition to microbial oxidation, the model also describes CO photochemical production, vertical mixing, and air-sea gas exchange. The new CO model has been embedded in the European Regional Seas Ecosystem Model (ERSEM) and coupled with the General Ocean Turbulence Model (GOTM). The CO-GOTM-ERSEM model was implemented at the Bermuda Atlantic Time Series (BATS) station to simulate CO concentrations observed in March 1993 by Kettle (1994). The proposed second-order function describing CO microbial oxidation introduces a new parameter, the bacteria biomass specific oxidation rate, which was estimated to be 5.7 ± 0.2 (μg C m−3)−1 h−1. Statistical metrics indicates that the new CO model performs better than a previously published model with a first-order decay function to describe microbial oxidation, acknowledging the dependence of microbial oxidation on bacterial abundance is realistic. A long-term (1992 - 1994) simulation carried out with CO-GOTM-ERSEM reproduced the spatial and seasonal variability of CO reported in the literature. Our model provides a realistic description of the CO dynamics and is potentially usable in different environmental contexts worldwide.

The relationship between bacterial diversity and organic carbon mineralization in soft rock and sand compound soil.

The soil organic carbon (SOC) mineralization rate in sandy soil plays an important role in improving soil quality, and a research is needed to determine management practices that optimize the mineralization rate. When sandy soil is improved by adding soft rock, the specific promotion process of bacterium to SOC mineralization remain unclear. To investigate these mechanisms, we selected four treatments with soft rock to sand volume ratios of 0:1 (CK), 1:5 (C1), 1:2 (C2) and 1:1 (C3) to study. The mineralization rate of organic carbon was measured using the lye absorption method. High-throughput sequencing and scanning electron microscopy were used to determine the bacterial community structure and soil microstructure, respectively. The results showed that the organic carbon content of the sandy soil increased significantly (182.22-276.43%) after using the soft rock treatments. The SOC mineralization rate could be divided into two stages: a rapid decline during days 1-8 and a slow decline during days 8-60. With increased incubation time, the intensity of the cumulative release of organic carbon gradually weakened. Compared with the CK treatment, the SOC mineralization accumulation (Ct) and the potential mineralizable organic carbon content (C0) in the C1, C2, and C3 treatments increased significantly, by 106.98-225.94% and 112.22-254.08%, respectively. The cumulative mineralization rate (Cr) was 18.11% and 21.38% smaller with treatments C2 and C3, respectively. The SOC mineralization rate constant (k) decreased significantly after the addition of soft rock, while the half-turnover period (Th) changed inversely with k. Compared with the CK treatment, the number of gene copies of the soil bacteria increased by 15.38-272.53% after adding soft rock, with the most significant increase in treatment C3. The bacterial diversity index also increased significantly under treatment C3. The three dominant bacteria were Proteobacteria, Actinobacteria, and Chloroflexi. The correlation between Cr and one of the non-dominant bacteria, Firmicutes, was large, and the bacteria had a significant positive correlation with k. At the same time, the abundance of Firmicutes under treatments C2 and C3 was small. As the proportion of soft rock increased, the soil particles changed from point contact to surface contact, and the adhesion on the surface of the particles gradually increased. Results from this study show that the retention time of SOC can be increased and the carbon sequestration effect is better when the ratio of soft rock to sand is set to 1:2.

Revealing hydrogen peroxide as an external stressor in macrophyte-dominated coastal ecosystems.

Benthic primary producers in coastal ecosystems provide important habitat for marine organisms through the provision of complex 3D habitat. Primary producers produce organic matter, while simultaneously producing reactive oxygen species, including hydrogen peroxide (H2O2), a driver of oxidative stress. Through their high biomass, productivity and effect on local hydrodynamics, benthic primary producers can potentially increase H2O2 concentrations surrounding the biogenic structures they form. The aim of this study was to identify the potential role of H2O2 produced by benthic primary producers as an external stressor in coastal ecosystems. This was achieved by measuring H2O2 concentrations within sea lettuce blooms (Ulva sp.), giant kelp forests (Macrocystis pyrifera), and seagrass meadows (Zostera muelleri); quantifying H2O2 production rates of these species; and testing heterotrophic bacterial response to relevant H2O2 concentrations. Ulva sp. produced five times more H2O2 than other species. At in situ concentrations, H2O2 inhibited bacterial production and carbon flow through the microbial loop by 75%. This study reveals H2O2 as an additional stressor in bloom-forming Ulva sp. with higher H2O2 production compared to the ecosystem engineers M. pyrifera and Z. muelleri. H2O2 production by benthic primary producers can affect carbon flow through the microbial loop, with the potential to propagate a stress signal up the food web.

Cryoconite Hole Location in East-Antarctic Untersee Oasis Shapes Physical and Biological Diversity.

Antarctic cryoconite holes (CHs) are mostly perennially ice-lidded and sediment-filled depressions that constitute important features on glaciers and ice sheets. Once being hydrologically connected, these microbially dominated mini-ecosystems provide nutrients and biota for downstream environments. For example, the East Antarctic Anuchin Glacier gradually melts into the adjacent perennially ice-covered Lake Untersee, and CH biota from this glacier contribute up to one third of the community composition in benthic microbial mats within the lake. However, biogeochemical features of these CHs and associated spatial patterns across the glacier are still unknown. Here we hypothesized about the CH minerogenic composition between the different sources such as the medial moraine and other zones. Further, we intended to investigate if the depth of the CH mirrors the CH community composition, organic matter (OM) content and would support productivity. In this study we show that both microbial communities and biogeochemical parameters in CHs were significantly different between the zones medial moraine and the glacier terminus. Variations in microbial community composition are the result of factors such as depth, diameter, organic matter, total carbon, particle size, and mineral diversity. More than 90% of all ribosomal sequence variants (RSV) reads were classified as Proteobacteria, Cyanobacteria, Bacteroidetes, Actinobacteria, and Acidobacteria. Archaea were detected in 85% of all samples and exclusively belonged to the classes Halobacteria, Methanomicrobia, and Thermoplasmata. The most abundant genus was Halorubrum (Halobacteria) and was identified in nine RSVs. The core microbiome for bacteria comprised 30 RSVs that were affiliated with Cyanobacteria, Bacteroidetes, Actinobacteria, and Proteobacteria. The archaeal fraction of the core microbiome consisted of three RSVs belonging to unknown genera of Methanomicrobiales and Thermoplasmatales and the genus Rice_Cluster_I (Methanocellales). Further, mean bacterial carbon production in cryoconite was exceptionally low and similar rates have not been reported elsewhere. However, bacterial carbon production insignificantly trended toward higher rates in shallow CHs and did not seem to be supported by accumulation of OM and nutrients, respectively, in deeper holes. OM fractions were significantly different between shallower CHs along the medial moraine and deeper CHs at the glacier terminus. Overall, our findings suggest that wind-blown material originating south and southeast of the Anuchin Glacier and deposits from a nunatak are assumed to be local inoculation sources. High sequence similarities between samples from the Untersee Oasis and other Antarctic sites further indicate long-range atmospheric transport mechanisms that complement local inoculation sources.

Effects of long-term straw retention on soil microorganisms under a rice–wheat cropping system

The objective of this study was to investigate how straw-incorporating practices affect bacterial communities and carbon source utilization capacity under a rice-wheat rotational farming practice in central China. To clarify the effect of long-term straw incorporation in microbial abundance and carbon metabolism, a long-term field experiment was initiated in May 2005 (rice-planting season). Soil bacterial communities were revealed by high-throughput sequencing technology. After ten cycles of annual rice-wheat rotation (2005-2015), 2M (straw incorporation) and 2M + NPK (high straw incorporation + chemical fertilizer) treatments had significantly more bacterial phyla compared with CK (non-fertilization) and NPK (chemical fertilizer) treatments. Taxonomic analysis revealed that 2M and NPK + 2M treatments had a significantly greater abundance of microbial communities, especially the Gemmatimonadetes, Acidobacteria, Firmicutes, and Actinobacteria. In the NPK versus 2M, 2M treatment had a significantly greater abundance of Rozellomycota (P < 0.05). In the NPK + 2M versus NPK, NPK + 2M treatment also had significantly greater abundance of Ascomycota (P < 0.05). Principal component analysis (PCA) analysis showed that 2M treatment was separate from other treatments. Using biolog-ECO method, the metabolic diversity and functional characteristics of microbial communities were used to indicate the ability of microorganisms to utilize carbon source. The carbon utilization ability of soil microorganisms in 2M + NPK treatment was significantly higher than that of CK treatment (P < 0.05). The utilization ability of carboxylic acids, polymers, and other mixtures of carbon sources in 2M treatment was higher than those of other treatments. These findings suggest that long-term straw incorporation affects the abundance and carbon utilization ability of soil microorganisms within 0-20cm soil depths, among which, Gemmatimonadetes, Firmicutes, and Actinobacteria may play crucial roles in bacterial communities and carbon source utilization capacity.

Impacts of chemical contamination on bacterio-phytoplankton coupling

Phytoplankton and bacterioplankton are the key components of the organic matter cycle in aquatic ecosystems, and their interactions can impact the transfer of carbon and ecosystem functioning. The aim of this work was to assess the consequences of chemical contamination on the coupling between phytoplankton and bacterioplankton in two contrasting marine coastal ecosystems: lagoon waters and offshore waters. Bacterial carbon demand was sustained by primary carbon production in the offshore situation, suggesting a tight coupling between both compartments. In contrast, in lagoon waters, due to a higher nutrient and organic matter availability, bacteria could rely on allochthonous carbon sources to sustain their carbon requirements, decreasing so the coupling between both compartments. Exposure to chemical contaminants, pesticides and metal trace elements, resulted in a significant inhibition of the metabolic activities (primary production and bacterial carbon demand) involved in the carbon cycle, especially in offshore waters during spring and fall, inducing a significant decrease of the coupling between primary producers and heterotrophs. This coupling loss was even more evident upon sediment resuspension for both ecosystems due to the important release of nutrients and organic matter. Resulting enrichment alleviated the toxic effects of contaminants as indicated by the stimulation of phytoplankton biomass and carbon production, and modified the composition of the phytoplankton community, impacting so the interactions between phytoplankton and bacterioplankton.

Drought changed soil organic carbon composition and bacterial carbon metabolizing patterns in a subtropical evergreen forest

Subtropical forests are considerable carbon sinks in the northern hemisphere, yet are increasingly suffering from the impact of extreme drought. To better understand the dynamics and kinetics of forest soil carbon storage under long-term drought, a rainfall-reduction experiment was established in a subtropical evergreen forest of eastern China. Soil organic carbon (SOC) composition, microbial carbon metabolism and the interactions with soil microbial community structure were investigated across different soil aggregate size fractions. After five years' treatment of rainfall reduction, a significant loss of large macroaggregates, as well as an increase of microaggregates by over 100% was observed. Meanwhile, drought changed the composition of SOC, reducing the non-hydrolyzed carbon and humin contents in large- to medium-size macroaggregates. Microbial metabolizing capacity of polymeric compounds was also reduced especially in the above aggregate fractions, whereas the utilization of small-molecular compounds was more impacted in small macroaggregates and microaggregates. The changes in carbon metabolizing patterns were further associated with the abundance changes of specific microbial taxa, revealing the microbially mediated mechanism of soil carbon metabolism under long-term drought. In addition, carbon metabolism in microaggregates was particularly sensitive to the changes of soil moisture, suggesting long-term drought may continually influence the functional resistance of the microbial communities. Taken together, our results provide insights into how biotic and abiotic processes together influence the SOC metabolizing processes, continued monitoring and investigation of which shall contribute to better understanding of the dynamics and kinetics of SOC storage under the impact of long-term drought.

The Modification of Regulatory Circuits Involved in the Control of Polyhydroxyalkanoates Metabolism to Improve Their Production.

Poly-(3-hydroxyalkanoates) (PHAs) are bacterial carbon and energy storage compounds. These polymers are synthesized under conditions of nutritional imbalance, where a nutrient is growth-limiting while there is still enough carbon source in the medium. On the other side, the accumulated polymer is mobilized under conditions of nutrient accessibility or by limitation of the carbon source. Thus, it is well known that the accumulation of PHAs is affected by the availability of nutritional resources and this knowledge has been used to establish culture conditions favoring high productivities. In addition to this effect of the metabolic status on PHAs accumulation, several genetic regulatory networks have been shown to drive PHAs metabolism, so the expression of the PHAs genes is under the influence of global or specific regulators. These regulators are thought to coordinate PHAs synthesis and mobilization with the rest of bacterial physiology. While the metabolic and biochemical knowledge related to the biosynthesis of these polymers has led to the development of processes in bioreactors for high-level production and also to the establishment of strategies for metabolic engineering for the synthesis of modified biopolymers, the use of knowledge related to the regulatory circuits controlling PHAs metabolism for strain improvement is scarce. A better understanding of the genetic control systems involved could serve as the foundation for new strategies for strain modification in order to increase PHAs production or to adjust the chemical structure of these biopolymers. In this review, the regulatory systems involved in the control of PHAs metabolism are examined, with emphasis on those acting at the level of expression of the enzymes involved and their potential modification for strain improvement, both for higher titers, or manipulation of polymer properties. The case of the PHAs producer Azotobacter vinelandii is taken as an example of the complexity and variety of systems controlling the accumulation of these interesting polymers in response to diverse situations, many of which could be engineered to improve PHAs production.

Global control of bacterial nitrogen and carbon metabolism by a PTSNtr-regulated switch

The nitrogen-related phosphotransferase system (PTSNtr) of Rhizobium leguminosarum bv. viciae 3841 transfers phosphate from PEP via PtsP and NPr to two output regulators, ManX and PtsN. ManX controls central carbon metabolism via the tricarboxylic acid (TCA) cycle, while PtsN controls nitrogen uptake, exopolysaccharide production, and potassium homeostasis, each of which is critical for cellular adaptation and survival. Cellular nitrogen status modulates phosphorylation when glutamine, an abundant amino acid when nitrogen is available, binds to the GAF sensory domain of PtsP, preventing PtsP phosphorylation and subsequent modification of ManX and PtsN. Under nitrogen-rich, carbon-limiting conditions, unphosphorylated ManX stimulates the TCA cycle and carbon oxidation, while unphosphorylated PtsN stimulates potassium uptake. The effects are reversed with the phosphorylation of ManX and PtsN, occurring under nitrogen-limiting, carbon-rich conditions; phosphorylated PtsN triggers uptake and nitrogen metabolism, the TCA cycle and carbon oxidation are decreased, while carbon-storage polymers such as surface polysaccharide are increased. Deleting the GAF domain from PtsP makes cells "blind" to the cellular nitrogen status. PTSNtr constitutes a switch through which carbon and nitrogen metabolism are rapidly, and reversibly, regulated by protein:protein interactions. PTSNtr is widely conserved in proteobacteria, highlighting its global importance.

Changes in soil carbon mineralization, soil microbes, roots density and soil structure following the application of the arbuscular mycorrhizal fungi and green algae in the arid saline soil

Evaluation of the potential mechanisms that link arbuscular mycorrhizal fungi (AMF) and green algae to carbon mineralization is highly fundamental under saline arid land since a deep vision into these interrelationships might lead to improvements in soil quality, carbon protection and the implication for a better ecosystem functioning. This study aimed to determine the interactions between arbuscular mycorrhizal fungi (Glomus mosseae), algal biomass (chlamydomonas sp) and subsequent effects on carbon mineralization, bacterial biomass carbon, soil pH, roots density, large macroaggregates (>2000 μm), small macroaggregates (250–2000 μm) and microaggregates (53–250 μm) in maize crop. The general nature of the results that were significant and what they mean is sufficient. Overall, results showed that the combination of AM fungi with algae was effective and provoked carbon decomposition and soil aggregates formation by lowering pH and boosting bacterial biomass C as well as roots density which can be beneficial to soil ecology through the enhancement of the soil bio-characteristics and the potential for the corn growth promotion in the arid saline soil.

Physicochemical and carbon quantity–quality gradients equally influence bacterial carbon metabolism across an arid riverscape

Although freshwater systems comprise a small portion of land surface, they play a pivotal role in landscape carbon (C) cycling. Carbon processing by heterotrophic bacteria is critical, contributing to ecosystem production and dissolved organic carbon (DOC) processing. Riverine bacterial C metabolism is related to a diversity of factors, including (1) physiochemical conditions and inorganic nutrient concentrations and (2) DOC quality and quantity; however, the relative importance of these factors in influencing C metabolism across arid fluvial networks remains equivocal. This study examined C metabolism by heterotrophic bacterioplankton in the Rio Grande drainage, an arid river network in Texas, USA. We examined spatial variation in physicochemical and inorganic nutrient conditions, bacterial C metabolism, and DOC lability across the drainage and assessed whether variation in bacterial C metabolism was more related to physicochemical–inorganic nutrient conditions or DOC quantity and lability. Across the drainage, hydrology and landscape position influenced physicochemical conditions, bacterial abundance, phytoplankton biomass, and bacterial C metabolism and the proportion of variation in bacterial C metabolism explained by physicochemical/inorganic nutrient and DOC quality–quantity gradients was approximately equal. Bacterial abundance and production were associated with greater NH4+ and DOC concentrations and phytoplankton biomass, whereas bacterial respiration and growth efficiency were driven by DOC color and suspended particulate concentrations. Results indicate that aspects of bacterial C metabolism are influenced by different environmental factors related to autochthonous and allochthonous inputs to riverine systems, which has implications for C transformation, sequestration, and transport to the ocean.

Phenotypic diversity of Methylobacterium associated with rice landraces in North-East India.

The ecology and distribution of many bacteria is strongly associated with specific eukaryotic hosts. However, the impact of such host association on bacterial ecology and evolution is not well understood. Bacteria from the genus Methylobacterium consume plant-derived methanol, and are some of the most abundant and widespread plant-associated bacteria. In addition, many of these species impact plant fitness. To determine the ecology and distribution of Methylobacterium in nature, we sampled bacteria from 36 distinct rice landraces, traditionally grown in geographically isolated locations in North-East (NE) India. These landraces have been selected for diverse phenotypic traits by local communities, and we expected that the divergent selection on hosts may have also generated divergence in associated Methylobacterium strains. We determined the ability of 91 distinct rice-associated Methylobacterium isolates to use a panel of carbon sources, finding substantial variability in carbon use profiles. Consistent with our expectation, across spatial scales this phenotypic variation was largely explained by host landrace identity rather than geographical factors or bacterial taxonomy. However, variation in carbon utilisation was not correlated with sugar exudates on leaf surfaces, suggesting that bacterial carbon use profiles do not directly determine bacterial colonization across landraces. Finally, experiments showed that at least some rice landraces gain an early growth advantage from their specific phyllosphere-colonizing Methylobacterium strains. Together, our results suggest that landrace-specific host-microbial relationships may contribute to spatial structure in rice-associated Methylobacterium in a natural ecosystem. In turn, association with specific bacteria may provide new ways to preserve and understand diversity in one of the most important food crops of the world.

Bacterial community composition and function along spatiotemporal connectivity gradients in the Danube floodplain (Vienna, Austria)

It is well recognized that river-floodplain systems contribute significantly to riverine ecosystem metabolism, and that bacteria are key players in the aquatic organic carbon cycle, but surprisingly few studies have linked bacterial community composition (BCC), function and carbon quality in these hydrologically highly dynamic habitats. We investigated aquatic BCC and extracellular enzymatic activity (EEA) related to dissolved organic carbon quality and algae composition, including the impact of a major flood event in one of the last remaining European semi-natural floodplain-systems. We found that surface connectivity of floodplain pools homogenizes BCC and EEA, whereas low connectivity led to increased BCC and EEA heterogeneity, supported by their relationship to electrical conductivity, an excellent indicator for surface connection strength. Hydrogeochemical parameters best explained variation of both BCC and EEA, while the algal community and chromophoric DOM properties explained only minor fractions of BCC variation. We conclude that intermittent surface connectivity and especially permanent isolation of floodplain pools from the main river channel may severely alter BCC and EEA, with potential consequences for nutrient cycling, ecological services and greenhouse gas emissions. Disentangling microbial structure–function coupling is therefore crucial, if we are to understand and predict the consequences of human alterations on these dynamic systems.

Impact of water column stability dynamics on the succession of plankton food web types in the offshore area of the Adriatic Sea

Vertical mixing and stratification are among the most important physical processes controlling nutrient dynamics, the dominant category of primary producers and consequently the dominant types of food web, and are therefore important for the assessment of the marine ecosystem's response to global climate change. This study showed consistent short-term cyclic successions of the plankton food web types, governed by the dynamics of water column stability changes, occurring in generally oligotrophic, phosphate deficient surface waters of the open middle Adriatic Sea. The biogeochemical nitrogen cycle appeared as a key driving force responsible for the food web structure changes. The ‘herbivorous food web’ dominated during the nitrate-rich mixed water column period (winter) and gradually changed to ‘multivorous food web’ where large phytoplankton still constitute a significant fraction of phytoplankton. This intermediate type of food web lasted for a short time and quickly changed to the typical ‘microbial food web’, which then dominated during the stratified water column period (summer) and was characterised by a large proportion of picoplankton size-fraction organisms in total plankton biomass and production. Furthermore, at the very end of summer, the high bacterial carbon flux through the ‘microbial loop’ was established. The succession of food web types affects the mechanisms of bacterial control in a way that ‘bottom up’ control dominated during the mixed water column period and ‘top-down’ control prevailed during the stratified period. Since the ongoing global warming is expected to change water column stability dynamics and thereby significantly affect the supply of nutrients in surface waters, this study helps to understand the possible direction of changes in the plankton food webs of the Adriatic Sea, and consequent changes in marine nitrogen and carbon biogeochemical cycles.

Differential visible spectral influence on carbon metabolism in heterotrophic marine flavobacteria.

The visible spectrum of solar radiation is known to stimulate photoheterotrophic bacterial carbon metabolism. However, its impact on 'strictly' heterotrophic bacteria remains less explored. Here, we show that heterotrophic flavobacteria exhibit enhanced uptake and mineralization of dissolved organic carbon with increasing wavelengths of visible light, without employing any 'known' light-harvesting mechanisms. RNA sequencing identified blue light as a major constraint in the extracellular enzymatic hydrolysis of polymeric carbohydrates and acquisition of sugars, despite acting as a stimulus for inorganic carbon sequestration. In contrast, green-red and continuous full-spectrum lights activated diverse hydrolytic enzymes and sugar transporters, but obstructed inorganic carbon fixation. This 'metabolic switching' was apparent through limited nutrient uptake, suppressed light-sensitivity, oxidative stress response and promotion of inorganic carbon sequestration pathways under blue light. The visible light impact on metabolism may be of significant ecological relevance as it appears to promote cell-mediated mineralization of organic carbon in 'green-colored' chlorophyll-rich copiotrophic coastal seawater and inorganic carbon sequestration in 'blue-colored' oligotrophic open ocean. Thus, a novel regulatory role played by light on heterotrophic metabolism and a hidden potential of flavobacteria to sense and respond differentially to monochromatic lights influencing marine carbon cycling were unraveled.

Effect of V Doping on Electrocatalytic Performance of Ni-Co-S on Bacterial Cellulose-derived Carbon Aerogel

Effect of V Doping on Electrocatalytic Performance of Ni-Co-S on Bacterial Cellulose-derived Carbon Aerogel

Bacterial Cellulose-derived Three-dimensional Carbon Current Collectors for Dendrite-Free Lithium Metal Anodes

Bacterial Cellulose-derived Three-dimensional Carbon Current Collectors for Dendrite-Free Lithium Metal Anodes