In the article, using computer modeling, an analysis of the operation of distance protection of backup transformers is carried out, providing alternative power supply for the own needs of a nuclear power plant through a backup busbar when disconnected from the power system. During the transition from the main network to the backup network, there is a short period of power off to the sections. At the same time, the powerful motor loads of the sections that have received power begin to operate in the freewheel braking mode. Then the reserve is automatically switched on, which can occur at a more or less favorable moment. At an unfavorable moment, self-starting may be electrically more severe than a short circuit on the busbar. When combining a new network from a backup auxiliary transformer and an autonomous circuit of running machines, transient processes of electromagnetic interaction between machines switching to generator mode and the new network arise. There are some optimal favorable moments for merging networks when it is advisable to carry out self-starting. Due to the complexity of the mathematical description with a high order system of equations and a large number of interaction objects, it is advisable to study these processes using computer modeling. A practical question, which is answered by the calculations and computer modeling, concerns the value of the distance protection setting for the backup transformer for auxiliary needs. Using the developed structural simulation model in MatLab, a series of experiments was carried out on the run-down and self-starting of auxiliary sections with their given composition and load. The range of self-start time corresponded to the operation of automatic switching on of the reserve sections by distance protection. Calculations and modeling show that the adopted setting can be adjusted, ensuring protection of a larger length of the busbar with possible options for connecting auxiliary sections to it. The model is supplemented with an add-on in the form of an external program for detailed processing and visualization of data obtained from oscilloscopes of the MatLab structural model.