Autotrophic Community Research Articles

Both lake regime and fish introduction shape autotrophic planktonic communities of lakes from the Patagonian Plateau (Argentina)

Strobel Plateau hosts more than 1,500 shallow lakes displaying different water regimes, which constitute the habitat for many species. Although the region is naturally fishless, many of the lakes were stocked with trout, bearing uncertainty about the possible effects on the ecosystem. The main objective of this study was to analyze the characteristics of planktonic autotrophic communities of lakes differing in regime (phytoplankton turbid, clear vegetated, and clear unvegetated) and presence/absence of fish. During late spring and summer, 14 water bodies were sampled in 2011 and 2013 considering different regimes and presence/absence of fish. Besides limnological variables, the autotrophic communities, from pico to microplankton, were also analyzed. Differences in physical and chemical characteristics observed among the lakes corresponded to their current regime and the presence/absence of trouts. Autotrophic picoplankton and phytoplankton > 20 µm abundances differed among lake types being highest in fish-stocked lakes. Although the three type of lakes presented phycoerythrin-rich picocyanobacteria and picoeukaryotes, only fish-stocked lakes hosted phycocyanin-rich picocyanobacteria. Moreover, fish-stocked lakes were dominated by cyanobacteria, while chlorophytes abounded in fishless systems. Evidences that lake regime and fish occurrence influence planktonic autotrophic communities of Strobel plateau is here provided, highlighting the intra- and interannual dynamism of the aquatic systems.

Metagenomic Signatures of Microbial Communities in Deep-Sea Hydrothermal Sediments of Azores Vent Fields.

The organisms inhabiting the deep-seafloor are known to play a crucial role in global biogeochemical cycles. Chemolithoautotrophic prokaryotes, which produce biomass from single carbon molecules, constitute the primary source of nutrition for the higher organisms, being critical for the sustainability of food webs and overall life in the deep-sea hydrothermal ecosystems. The present study investigates the metabolic profiles of chemolithoautotrophs inhabiting the sediments of Menez Gwen and Rainbow deep-sea vent fields, in the Mid-Atlantic Ridge. Differences in the microbial community structure might be reflecting the distinct depth, geology, and distance from vent of the studied sediments. A metagenomic sequencing approach was conducted to characterize the microbiome of the deep-sea hydrothermal sediments and the relevant metabolic pathways used by microbes. Both Menez Gwen and Rainbow metagenomes contained a significant number of genes involved in carbon fixation, revealing the largely autotrophic communities thriving in both sites. Carbon fixation at Menez Gwen site was predicted to occur mainly via the reductive tricarboxylic acid cycle, likely reflecting the dominance of sulfur-oxidizing Epsilonproteobacteria at this site, while different autotrophic pathways were identified at Rainbow site, in particular the Calvin-Benson-Bassham cycle. Chemolithotrophy appeared to be primarily driven by the oxidation of reduced sulfur compounds, whether through the SOX-dependent pathway at Menez Gwen site or through reverse sulfate reduction at Rainbow site. Other energy-yielding processes, such as methane, nitrite, or ammonia oxidation, were also detected but presumably contributing less to chemolithoautotrophy. This work furthers our knowledge of the microbial ecology of deep-sea hydrothermal sediments and represents an important repository of novel genes with potential biotechnological interest.

Impacto de la contaminación orgánica sobre el fitoplancton de un arroyo de la llanura pampeana

Fil: Padulles, Maria Luz. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Oficina de Coordinacion Administrativa Ciudad Universitaria. Instituto de Biodiversidad y Biologia Experimental y Aplicada. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Biodiversidad y Biologia Experimental y Aplicada; Argentina. Consejo Nacional de Investigaciones Cientificas y Tecnicas. Oficina de Coordinacion Administrativa Ciudad Universitaria. Instituto de Ecologia, Genetica y Evolucion de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecologia, Genetica y Evolucion de Buenos Aires; Argentina

Influence of mixed upwelled waters on metabolic balance in a subtropical coastal ecosystem: São Sebastião Channel, southern Brazil

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 573:61-72 (2017) - DOI: https://doi.org/10.3354/meps12162 Influence of mixed upwelled waters on metabolic balance in a subtropical coastal ecosystem: São Sebastião Channel, southern Brazil Aurore Regaudie-de-Gioux1,4,*, Alexandre Castagna1, Amabile Ferreira1, Medea Abbrecht2, Elisabete S. Braga3, Aurea M. Ciotti1 1Laboratório Aquarela, Centro de Biologia Marinha (CEBIMar), Universidade de São Paulo, Rod. Manoel Hipólito do Rego Km 131.5, São Sebastião-SP, 11600-000, Brazil 2Universität Hohenheim, Schloss Hohenheim 1, 70599 Stuttgart, Germany 3Laboratório de Biogeoquímica de Nutrientes, Micronutrientes e Traços nos Oceanos, Instituto Oceanográfico, Universidade de São Paulo, Praça do Oceanográfico, 191, São Paulo-SP, 05508-900, Brazil 4Present address: Instituto Mediterranéo de Estudios Avanzados, calle Miquel Marqués 21, 07190 Esporles, Spain *Corresponding author: aurore.regaudie@imedea.uib-csic.es ABSTRACT: Planktonic gross primary production (GPP), community respiration (CR) and net community production (NCP) were evaluated for the first time in the central part of the Southern Brazilian Bight (SBB), in the São Sebastião Channel (SSC); and their response to the South Atlantic Coastal Water (SACW) intrusion was investigated. Sampling experiments took place during late spring 2015 and summer 2016 at a fixed station in the southern portion of the SSC. Although both chlorophyll a and nutrient concentrations were characteristic of oligotrophic and low productive ecosystems, all volumetric planktonic metabolism experiments showed high net and gross primary productions rates. Depth-integrated NCP and GPP values had a global mean ±SE of 31 ± 10.5 and 106.7 ± 11.5 mmol O2 m-2 d-1, respectively. The communities tended to be net heterotrophic (i.e. GPP/CR < 1) at volumetric GPP values less than 7.10 mmol O2 m-3 d-1. The intrusion of nutrient-rich and -mixed water (partly SACW) observed during the summer experiments had a strong influence on autotrophic planktonic communities, enhancing their NCP rates about 3-fold. Nutrient supply by terrestrial inputs and by upwelled SACW intrusion in the SSC enables high primary production to be sustained with a dominance of autotrophic communities. KEY WORDS: Plankton · Metabolism · Southern Brazilian Bight · SACW Full text in pdf format PreviousNextCite this article as: Regaudie-de-Gioux A, Castagna A, Ferreira A, Abbrecht M, Braga ES, Ciotti AM (2017) Influence of mixed upwelled waters on metabolic balance in a subtropical coastal ecosystem: São Sebastião Channel, southern Brazil. Mar Ecol Prog Ser 573:61-72. https://doi.org/10.3354/meps12162 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 573. Online publication date: June 21, 2017 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2017 Inter-Research.

Application of diet theory reveals context-dependent foraging preferences in an herbivorous coral reef fish.

Dietary preferences of grazers can drive spatial variability in top-down control of autotroph communities, because diet composition may depend on the relative availability of autotroph species. On Caribbean coral reefs, parrotfish grazing is important in limiting macroalgae, but parrotfish dietary preferences are poorly understood. We applied diet-switching analysis to quantify the foraging preferences of the redband parrotfish (Sparisoma aurofrenatum). At 12 Caribbean reefs, we observed 293 redband parrotfish in 5-min feeding bouts and quantified relative benthic algal cover using quadrats. The primary diet items were macroalgal turfs, Halimeda spp., and foliose macroalgae (primarily Dictyota spp. and Lobophora spp.). When each resource was evaluated independently, there were only weak relationships between resource cover and foraging effort (number of bites taken). Electivity for each resource also showed no pattern, varying from positive (preference for the resource) to negative (avoidance) across sites. However, a diet-switching analysis consisting of pairwise comparisons of relative cover and relative foraging effort revealed clearer patterns: parrotfish (a) preferred Halimeda and macroalgal turfs equally, and those two resources were highly substitutable; (b) preferred Halimeda to foliose macroalgae, but those two resources were complementary; and (c) also preferred turf to foliose macroalgae, and those resources were also complementary. Thus parrotfish grazing rates depend on relative, not absolute, abundance of macroalgal types, due to differences in substitutability among resources. Application of similar analyses may help predict potential changes in foraging effort of benthic grazers over spatial gradients that could inform expectations for reef recovery following the protection of herbivore populations.

Effects of land use changes on eutrophication indicators in five coastal lagoons of the Southwestern Atlantic Ocean

Five catchment areas in Uruguay were selected to conduct a nutrient exportation analysis and to evaluate the effects of current land use on the eutrophication of coastal lagoons. Satellite images and national agriculture censuses were used for a quantitative analysis of land use changes from 1974 to 2005, and a nutrient export coefficient approximation was used to determine long-term changes in annual loads. Several eutrophication indicators (water, sediment and autotrophic communities) were assessed seasonally in the lagoon basins during 2005 and 2006. The areal annual load of nutrients exported to the lagoons increased over time. Population and extensive livestock ranching were the most important nutrient sources, while agriculture is increasing in importance. Buffer effects of riparian forests on eutrophication indicators were observed in contrast to the wetlands surrounding the lagoons, which seem to be acting as a source of nutrients. Catchment size was inversely related to most eutrophication indicators. Afforestation and agriculture were found not to directly impact eutrophication indicators, however, catchments with larger agricultural areas showed higher concentrations of suspended solids, which may indicate the export of particulate nutrients. Salinity was inversely related to most eutrophication indicators, suggesting that the manipulation of the sand bar of the lagoons is a critical management issue. Sediment-related eutrophication indicators were more sensitive to changes in land uses and covers, in contrast with the more variable water column indicators, suggesting their potential use as enduring indicators. This research provides a rapid and integral assessment for qualitatively linking catchment changes with eutrophication indicators in coastal environments, which can easily be replicated to track pollutants in locations that lack standardized monitoring programs needed for more complex catchment modeling approaches.

Uptake-release dynamics of the inorganic and organic carbon pool mediated by planktonic prokaryotes in the deep Mediterranean Sea.

Understanding the ecosystem functioning in the dark portion of the ocean is a challenge that microbial ecologists are still facing. Due to the large volume, the global deep Ocean plays a central role in the regulation of climate, possibly buffering the rise of atmospheric carbon dioxide if processes of CO2 fixation compensate for respiration. We investigated the rates of several prokaryotic activities (dissolved and particulate primary production, heterotrophic carbon production and respiration) in meso- and bathypelagic waters of the Mediterranean Sea, covering all sub-basins. Chemosynthesis was the main process for C uptake. The rates of organic C (OC) excretion (or viral-induced cell lysis) inferred from the dissolved primary production measurements were noteworthy, being comparable to particulate primary production, and possibly contributing to the formation of non-sinking particulate organic matter. Inorganic C fixation rates were significantly higher than those reported for other deep-sea systems, probably as a consequence of the persistently higher temperature of dark Mediterranean waters or to phylogenetically diverse communities involved in the process. Primary production was negatively correlated with dissolved organic carbon concentration and showed an inverse pattern to heterotrophic carbon production, indicating a niche partitioning between heterotrophs and autotrophs. In sum, the deep Mediterranean Sea harbors active autotrophic communities able to fix inorganic carbon faster than the heterotrophic carbon production rates.

Subsidies mediate interactions between communities across space

Most spatial ecology focuses on how species dispersal affects community dynamics and coexistence. Ecosystems, however, are also commonly connected by flows of resources. We experimentally tested how neighbouring communities indirectly influence each other in absence of dispersal, via resource exchanges. Using two‐patch microcosm meta‐ecosystems, we manipulated community composition and dynamics, by varying separately species key functional traits (autotroph versus heterotroph species and size of consumer species) and trophic structure of aquatic communities (species growing alone or in presence of competitors or predators). We then analysed the effects of species functional traits and trophic structure on communities connected through spatial subsidies in the absence of actual dispersal. Both functional traits and trophic structure strongly affected dynamics across neighbouring communities. Heterotroph communities connected to autotroph neighbours developed better than with heterotroph neighbours, such that coexistence of competitors was determined by the functional traits of the neighbouring community. Densities in autotroph communities were also strikingly higher when receiving subsidies from heterotroph communities compared to their own subsidies when grown in isolated ecosystems. In contrast, communities connected to predator‐dominated ecosystems collapsed, without any direct contact with the predators. Our results demonstrate that because community composition and structure modify the distribution of biomass within a community, they may also affect communities connected through subsidies through quantitative and qualitative changes of detritus flows. This stresses that ecosystem management should account for such interdependencies mediated by spatial subsidies, given that local community alterations cascade across space onto other ecosystems even if species dispersal is completely absent.

Elevated trace metal content of prokaryotic communities associated with marine oxygen deficient zones

AbstractLittle is known about the trace metal content of marine prokaryotes, in part due to their co‐occurrence with more abundant particulate phases in the upper ocean, such as phytoplankton and biogenic detritus, lithogenic minerals, and authigenic Mn and Fe oxyhydroxides. We attempt to isolate these biomass signals in particulate data from the US GEOTRACES Eastern Pacific Zonal Transect (cruise GP16) in the Eastern Tropical South Pacific (ETSP), which exhibited consistent maxima in P and other bioactive trace metals, and minima in particulate Mn, in the oxygen deficient zones (ODZs) of 13 stations. Nitrite maxima and nitrate deficits indicated the presence of denitrifying prokaryotic biomass within ETSP ODZs, and deep secondary fluorescence maxima at the upper ODZ boundaries of 10 stations also suggested the presence of low‐light, autotrophic communities. ODZs were observed as far west as 99°W, more than 2300 km from the South American coast, where eolian lithogenic and lateral/resuspended sedimentary inputs were negligible, presenting a unique opportunity to examine prokaryotic metal stoichiometries. ODZ particulate P maxima can rival gyre mixed layer biomass concentrations, are highly sensitive to oxygen, and are in excess of amounts scavengable by local Fe oxyhydroxides and acid–volatile sulfides. Even after correction for lithogenic and ferruginous–scavenged metals, ODZ P‐maxima are often enriched in Cd, Co, Cu, Ni, V, and Zn, exhibiting particulate trace metal ratios to P that exceed mixed layer biomass ratios by factors of 2–9. ODZ prokaryotic communities may be largely hidden, TM–rich pools involved in the marine cycles of these bioactive trace metals.

Understanding planktonic vs. benthic algal response to manipulation of nutrients and light in a eutrophic lake

ABSTRACTSteinman A, Abdimalik M, Ogdahl ME, Oudsema M. 2016. Understanding planktonic vs. benthic algal response to manipulation of nutrients and light in a eutrophic lake. Lake Reserve Manage. 32:402–409.We examined the environmental factors influencing the growth of benthic and planktonic algae in Lake Macatawa, a hypereutrophic lake located in west Michigan. Turbidity may limit planktonic growth in the main body of the lake, despite high P concentrations, whereas shallow water depths in the littoral regions of the lake may allow benthic algal growth. We experimentally amended nutrients to benthic algae using nutrient diffusing substrates near the sediment surface and to phytoplankton using nitrogen (N) and phosphorus (P) spikes into 10 L carboys suspended from a PVC-constructed frame near the water surface to test how nutrient and light regimes influence these potentially competing autotrophic communities. Benthic algae were co-limited by N and P, whereas phytoplankton were P-limited. The N-only treatments resulted in negative algal growth. In addition, microcystin concentration (phytoplankton only) also responded positively to P additions and negatively to N-only treatments. We speculate that much of the P in this lake is bound to sediment and not bioavailable, so despite the high total P concentrations, the algae are P-limited at certain times of the year. Irradiance levels did not seem to be photosynthetically limiting during this study. Our results have management implications: (1) use of TP as an indicator of P limitation may be flawed without concomitant measurement of bioavailable P; and (2) control of external P loading is critical to directly limit phytoplankton abundance but also can result in indirect control of benthic algae if internal P loading from the sediment is a key source of P to this community.

Marine Primary Productivity Is Driven by a Selection Effect

The number of species of autotrophic communities can increase ecosystem productivity through species complementarity or through a selection effect which occurs when the biomass of the community approaches the monoculture biomass of the most productive species. Here we explore the effect of resource supply on marine primary productivity under the premise that the high local species richness of phytoplankton communities increases resource use through transient selection of productive species. Using concurrent measurements of phytoplankton community structure, nitrate fluxes into the euphotic zone and productivity from a temperate coastal ecosystem, we find that observed productivities are best described by a population growth model in which the dominant species of the community approach their maximum growth rates. We interpret these results as evidence of species selection in communities containing a vast taxonomic repertory. The prevalence of selection effect was supported by open ocean data that show an increase in community dominance across a gradient of nutrient availability. These results highlight the way marine phytoplankton optimize resources and sustain world food stocks. We suggest that the maintenance of phytoplankton species richness is essential to sustain marine primary productivity since it guarantees the occurrence of highly productive species.

Effects of UVB radiation on net community production in the upper global ocean

AbstractAimErosion of the stratospheric ozone layer together with oligotrophication of the subtropical ocean is leading to enhanced exposure to ultraviolet B (UVB) radiation in ocean surface waters. The impact of increased exposure to UVB on planktonic primary producers and heterotrophs is uncertain. Here we test the null hypothesis that net community production (NCP) of plankton communities in surface waters of the tropical and subtropical ocean is not affected by ambient UVB radiation and extend this test to the global ocean, including the polar oceans and the Mediterranean Sea using previous results.LocationWe conducted experiments with 131 surface communities sampled during a circumnavigation cruise along the tropical and subtropical ocean and combined these results with 89 previous reports encompassing the Atlantic, Pacific, Arctic and Southern Oceans and the Mediterranean Sea.MethodsThe use of quartz (transparent to UVB radiation) and borosilicate glass materials (opaque to most UVB) for incubations allowed us to compare NCP between communities where UVB is excluded and those receiving natural UVB radiation.ResultsWe found that NCP varies when exposed to natural UVB radiation compared to those where UVB was removed. NCP of autotrophic communities tended to decrease under natural UVB radiation, whereas the NCP of heterotrophic communities tended to increase. However, these variations showed the opposite trend under higher levels of UVB radiation.Main conclusionsOur results suggest that earlier estimates of NCP for surface communities, which were hitherto derived using materials blocking UVB radiation were biased, with the direction and magnitude of this bias depending on the metabolic status of the communities and the underwater penetration of UVB radiation.

Diversity and succession of autotrophic microbial community in high-elevation soils along deglaciation chronosequence

Global warming has resulted in substantial glacier retreats in high-elevation areas, exposing deglaciated soils to harsh environmental conditions. Autotrophic microbes are pioneering colonizers in the deglaciated soils and provide nutrients to the extreme ecosystem devoid of vegetation. However, autotrophic communities remain less studied in deglaciated soils. We explored the diversity and succession of the cbbL gene encoding the large subunit of form I RubisCO, a key CO2-fixing enzyme, using molecular methods in deglaciated soils along a 10-year deglaciation chronosequence on the Tibetan Plateau. Our results demonstrated that the abundance of all types of form I cbbL (IA/B, IC and ID) rapidly increased in young soils (0-2.5 years old) and kept stable in old soils. Soil total organic carbon (TOC) and total nitrogen (TN) gradually increased along the chronosequence and both demonstrated positive correlations with the abundance of bacteria and autotrophs, indicating that soil TOC and TN originated from autotrophs. Form IA/B autotrophs, affiliated with cyanobacteria, exhibited a substantially higher abundance than IC and ID. Cyanobacterial diversity and evenness increased in young soils (<6 years old) and then remained stable. Our findings suggest that cyabobacteria play an important role in accumulating TOC and TN in the deglaciated soils.

Effects of pulsed atrazine exposures on autotrophic community structure, biomass, and production in field-based stream mesocosms.

The authors performed a multiple-pulsed atrazine experiment to measure responses of autotrophic endpoints in outdoor stream mesocosms. The experiment was designed to synthetically simulate worst-case atrazine chemographs from streams in agricultural catchments to achieve 60-d mean concentrations of 0 μg/L (control), 10 μg/L, 20 μg/L, and 30 μg/L. The authors dosed triplicate streams with pulses of 0 μg/L, 50 μg/L, 100 μg/L, and 150 μg/L atrazine for 4 d, followed by 7 d without dosing. This 11-d cycle occurred 3 times, followed by a recovery (untreated) period from day 34 to day 60. Mean ± standard error 60-d atrazine concentrations were 0.07 ± 0.03 μg/L, 10.7 ± 0.05 μg/L, 20.9 ± 0.24 μg/L, and 31.0 ± 0.17 μg/L for the control, 10-μg/L, 20-μg/L, and 30-μg/L treatments, respectively. Multivariate analyses revealed that periphyton and phytoplankton community structure did not differ among treatments on any day of the experiment, including during the atrazine pulses. Control periphyton biomass in riffles was higher immediately following the peak of the first atrazine pulse and remained slightly higher than some of the atrazine treatments on most days through the peak of the last pulse. However, periphyton biomass was not different among treatments at the end of the present study. Phytoplankton biomass was not affected by atrazine. Metaphyton biomass in pools was higher in the controls near the midpoint of the present study and remained higher on most days for the remainder of the study. Ceratophyllum demersum, a submersed macrophyte, biomass was higher in controls than in 20-μg/L and 30-μg/L treatments before pulse 3 but was not different subsequent to pulse 3 through the end of the present study. Maximum daily dissolved oxygen (DO, percentage of saturation) declined during each pulse in approximate proportion to magnitude of dose but rapidly converged among treatments after the third pulse. However, DO increased in controls relative to all atrazine treatments during the last 17 d of the experiment, likely a result of metaphyton cover in the pools. Finally, atrazine significantly limited uptake of PO4(3-) and uptake and/or denitrification of NO3(-) but only during pulses; percentage of dose removed from the water column was >85% for P and >95% for N after pulse 3 through the end of the present study. Collectively, only DO and metaphyton biomass differed at the end of the present study and only slightly. Some other endpoints were affected but only during pulses, if at all. The high levels of primary production and accumulation of algal biomass in all streams suggest that effects of pulses of atrazine at the concentrations used in the present study appear transient and likely do not represent ecologically significant adverse outcomes to periphyton, phytoplankton, and aquatic macrophytes, particularly in agricultural streams subjected to high nutrient loads.

Saldanha Bay, South Africa II: estimating bay productivity

Saldanha Bay is a narrow-mouth bay on the west coast of South Africa linked to the southern Benguela upwelling system. Bay productivity was investigated by use of the conventional light-and-dark bottle oxygen method, and, for comparison, through assimilation of the stable isotope tracer 13C. Gross community production GCP and net community production NCP, as determined from the oxygen method, were respectively 2.6 and 2.4 times higher than estimates determined from the stable isotope method. Chlorophyll a (Chl a) concentrations increased with the onset of spring and well-defined subsurface maxima developed in association with increasingly stratified conditions (mean water column Chl a concentrations ranged from 5.4 to 31.5 mg m−3 [mean 15.5 mg m−3; SD 7.6]). A sharp decline in photosynthetic rates P* (GCP normalised to Chl a concentration) with depth was attributed to light limitation, as demonstrated by the high vertical attenuation coefficients for downward irradiance Kd, which varied from 0.29 to 0.70 m−1 (mean 0.48 m−1; SD 0.12). Productivity maxima were consequently near-surface despite the presence of deeper subsurface biomass maxima. The community compensation depth Zcc, where gross community production balances respiratory carbon loss for the entire community, ranged from 2.9 to 9.2 m (mean 5.8 m; SD 2.2), and was typically shallower than the 1% light depth for PAR (photosynthetically available radiation), Z1%PAR, which is traditionally assumed to be the depth of the euphotic zone and which ranged from 6.6 to 15.9 m (mean 9 m; SD 2.6). Autotrophic communities, where organic matter is produced in excess of respiratory demand, were confined on average to the upper 5.8 m of the water column, and often excluded the bulk of the phytoplankton community, where light limitation is considered to lead to heterotrophic community metabolism. Estimates of integrated water column productivity ranged from 0.84 to 8.46 g C m–2 d−1 (mean 3.35 g C m−2 d−1; SD 1.9).

Acclimation of Potamogeton perfoliatus L. to periphyton accumulation-induced spectral changes in irradiance

The biomass and composition of autotrophic communities in the littoral zone are mainly affected by light availability. In a field study, the spectral attenuation of periphyton was assessed. Periphyton absorbed more light in the red than in the infrared spectral range, resulting in a lower red to infrared ratio (~0.3 during the most active period of periphyton accumulation, compared with 0.9–1 otherwise). The lowest red to infrared ratio was detected in the upper 20–40 cm of the water column. Epiphytic algae are therefore found to affect not only the quantity but also the quality of light passing through periphyton. Acclimation of Potamogeton perfoliatus L. plantlets to such infrared-enriched light was also studied in the laboratory. During leaf morphogenesis, lower red to infrared ratio light was associated with increased leaf area via the growth of existing (+85%) and the production of new leaves. Intensified internode length growth (+130%) was also observed. Post morphogenesis, no leaf or internode growth was observed and new shoot production was also intensive. Leaf photochemical activity did not significantly differ between groups or treatments. Results suggest that periphyton could trigger shade-tolerance (leaf growth), shade-avoidance (internode growth), and morphogenetic (branch production from axillary buds) adaptations in macrophytes.

Diversity and distribution of autotrophic microbial community along environmental gradients in grassland soils on the Tibetan Plateau.

Soil microbial autotrophs play a significant role in CO2 fixation in terrestrial ecosystem, particularly in vegetation-constrained ecosystems with environmental stresses, such as the Tibetan Plateau characterized by low temperature and high UV. However, soil microbial autotrophic communities and their driving factors remain less appreciated. We investigated the structure and shift of microbial autotrophic communities and their driving factors along an elevation gradient (4400-5100 m above sea level) in alpine grassland soils on the Tibetan Plateau. The autotrophic microbial communities were characterized by quantitative PCR, terminal restriction fragment length polymorphism (T-RFLP), and cloning/sequencing of cbbL genes, encoding the large subunit for the CO2 fixation protein ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO). High cbbL gene abundance and high RubisCO enzyme activity were observed and both significantly increased with increasing elevations. Path analysis identified that soil RubisCO enzyme causally originated from microbial autotrophs, and its activity was indirectly driven by soil water content, temperature, and NH4 (+) content. Soil autotrophic microbial community structure dramatically shifted along the elevation and was jointly driven by soil temperature, water content, nutrients, and plant types. The autotrophic microbial communities were dominated by bacterial autotrophs, which were affiliated with Rhizobiales, Burkholderiales, and Actinomycetales. These autotrophs have been well documented to degrade organic matters; thus, metabolic versatility could be a key strategy for microbial autotrophs to survive in the harsh environments. Our results demonstrated high abundance of microbial autotrophs and high CO2 fixation potential in alpine grassland soils and provided a novel model to identify dominant drivers of soil microbial communities and their ecological functions.

Estimates of micro-, nano-, and picoplankton contributions to particle export in the northeast Pacific

Abstract. The contributions of micro-, nano-, and picoplankton to particle export were estimated from measurements of size-fractionated particulate 234Th, organic carbon, and phytoplankton indicator pigments obtained during five cruises between 2010 and 2012 along Line P in the subarctic northeast Pacific Ocean. Sinking fluxes of particulate organic carbon (POC) and indicator pigments were calculated from 234Th–238U disequilibria and, during two cruises, measured by a sediment trap at Ocean Station Papa. POC fluxes at 100 m ranged from 0.65 to 7.95 mmol m−2 d−1, similar in magnitude to previous results at Line P. Microplankton pigments dominate indicator pigment fluxes (averaging 69 ± 19% of total pigment flux), while nanoplankton pigments comprised the majority of pigment standing stocks (averaging 64 ± 23% of total pigment standing stocks). Indicator pigment loss rates (the ratio of pigment export flux to pigment standing stocks) point to preferential export of larger microplankton relative to smaller nano- and picoplankton. However, indicator pigments do not quantitatively trace particle export resulting from zooplankton grazing, which may be an important pathway for the export of small phytoplankton. These results have important implications for understanding the magnitude and mechanisms controlling the biological pump at Line P in particular, and more generally in oligotrophic gyres and high-nutrient, low-chlorophyll (HNLC) regions where small phytoplankton represent a major component of the autotrophic community.

Cropping systems modulate the rate and magnitude of soil microbial autotrophic CO2 fixation in soil.

The effect of different cropping systems on CO2 fixation by soil microorganisms was studied by comparing soils from three exemplary cropping systems after 10 years of agricultural practice. Studied cropping systems included: continuous cropping of paddy rice (rice-rice), rotation of paddy rice and rapeseed (rice-rapeseed), and rotated cropping of rapeseed and corn (rapeseed-corn). Soils from different cropping systems were incubated with continuous 14C-CO2 labeling for 110 days. The CO2-fixing bacterial communities were investigated by analyzing the cbbL gene encoding ribulose-1,5-bisphosphate carboxylase oxygenase (RubisCO). Abundance, diversity and activity of cbbL-carrying bacteria were analyzed by quantitative PCR, cbbL clone libraries and enzyme assays. After 110 days incubation, substantial amounts of 14C-CO2 were incorporated into soil organic carbon (14C-SOC) and microbial biomass carbon (14C-MBC). Rice-rice rotated soil showed stronger incorporation rates when looking at 14C-SOC and 14C-MBC contents. These differences in incorporation rates were also reflected by determined RubisCO activities. 14C-MBC, cbbL gene abundances and RubisCO activity were found to correlate significantly with 14C-SOC, indicating cbbL-carrying bacteria to be key players for CO2 fixation in these soils. The analysis of clone libraries revealed distinct cbbL-carrying bacterial communities for the individual soils analyzed. Most of the identified operational taxonomic units (OTU) were related to Nitrobacter hamburgensis, Methylibium petroleiphilum, Rhodoblastus acidophilus, Bradyrhizobium, Cupriavidus metallidurans, Rubrivivax, Burkholderia, Stappia, and Thiobacillus thiophilus. OTUs related to Rubrivivax gelatinosus were specific for rice-rice soil. OTUs linked to Methylibium petroleiphilum were exclusively found in rice-rapeseed soil. Observed differences could be linked to differences in soil parameters such as SOC. We conclude that the long-term application of cropping systems alters underlying soil parameters, which in turn selects for distinct autotrophic communities.

Diversity and spatial distribution of autotrophic communities within and between ice‐covered Antarctic lakes (McMurdo Dry Valleys)

AbstractWe compared the spatial distribution and diversity of autotrophic microbial communities among four permanently ice‐covered, chemically stratified lakes located in the Taylor (Lakes Bonney‐east and west lobes, Fryxell), and Wright (Lake Vanda) Valleys of the McMurdo Dry Valleys (Victoria Land, Antarctica). Clone libraries were constructed for major carbon fixation genes (rbcL isoforms IA/B and ID; cbbM; nifJ). Real time quantitative polymerase chain reaction assays were also developed for each of these markers of autotrophy to assess the influence of lake physicochemical factors on spatial trends in major photosynthetic and chemolithoautotrophic groups. Both lobes of Lake Bonney were dominated by Ribulose‐1, 5‐bisphosphate carboxylase oxygenase (RubisCO) form ID rbcL (haptophytes and stramenopiles), while Lake Fryxell was dominated by rbcL form ID‐harboring cryptophytes. Lake Vanda was the least productive lake and was dominated by form IA/B rbcL (cyanobacteria and chlorophytes) and form ID rbcL (stramenopiles). Autotrophic carbon fixation genes from photosynthetic organisms were generally positively correlated with light availability. Chemolithoautotrophic organisms harboring form II RubisCO were detected in only two of the four lakes (west lobe Lake Bonney and Fryxell) and were associated with the presence of either sulfide (Fryxell) or dimethylated sulfur compounds (west lobe Lake Bonney).