Autochthonous Marine Research Articles

Metagenomic analysis of pioneer biofilm-forming marine bacteria with emphasis on Vibrio gigantis adhesion dynamics

Marine biofilms occur frequently and spontaneously in seawater, on almost any submerged solid surface. At the early stages of colonization, it consists of bacteria and evolves into a more complex community. Using 16S rRNA amplicon sequencing and comparative metagenomics, the composition and predicted functional potential of one- to three-day old bacterial communities in surface biofilms were investigated and compared to that of seawater. This confirmed the autochthonous marine bacterium Vibrio gigantis as an early and very abundant biofilm colonizer, also functionally linked to the genes associated with cell motility, surface attachment, and communication via signaling molecules (quorum sensing), all crucial for biofilm formation. The dynamics of adhesion on a solid surface of V. gigantis alone was also monitored in controlled laboratory conditions, using a newly designed and easily implementable protocol. Resulting in a calculated percentage of bacteria-covered surface, a convincing tendency of spontaneous adhering was confirmed. From the multiple results, its quantified and reproducible adhesion dynamics will be used as a basis for future experiments involving surface modifications and coatings, with the goal of preventing adhesion.

Bioprospecting autochthonous marine microalgae strain from the Arabian Gulf Seawater, Kuwait for biofuel feedstocks

Bioprospecting programmes are the key to increasing the current portfolio of indigenous microalgal strains accessible for different applications in microalgal biotechnology. In this work, nine fastgrowing microalgal strains isolated from the Arabian/Persian Gulf coastal waters of Kuwait were evaluated for their potential as biofuel feedstocks. 18S rRNA gene sequencing showed that the strains belong to five different genera, namely, Chlorella, Nannochloris, Scenedesmus, Tetraselmis, and Nannochloropsis. In terms of the total lipid content, in comparison to the other strains, Tetraselmis sp. KUBS13G and Tetraselmis sp. KUBS16G displayed higher lipid contents of 29.56% dry weight (DW) and 26.13% DW, respectively, which were dominated by palmitic and oleic acids. Fuel properties calculated from the fatty acid methyl esters (FAMEs) by empirical equations were compared with EN14214 (European) and ASTM D6751-−02 (American) biodiesel standards. Multicriteria decision analysis (MCDA) methods, such as the Preference Ranking Organization Method for Enrichment Evaluation (PROMETHEE) and Graphical Analysis for Interactive Assistance (GAIA), were used to select suitable microalgae for biofuel feedstock based on their biodiesel fuel properties. Overall, the results suggested that the indigenous microalgal strain Tetraselmis, in particular Tetraselmis sp. KUBS37G, and Scenedesmus sp. KUBS17R are the most suitable strains for biofuel feedstock owing to their improved fuel properties, such as density (ρ) (0.88 g cm−3), low kinematic viscosity (3.1 mm2 s−1), high cetane number (54 and 56, respectively), high oxidation stability (14.6 hr and 14.8 hr), and cold-filter plugging point (1.0°C and -6.1°C).

Equilibrium calculations of iron speciation and apparent iron solubility in the Celtic Sea at ambient seawater pH using the NICA-Donnan model

We used a combined ion pairing - organic matter speciation model (NICA-Donnan) to predict the organic complexation of iron (Fe) at ambient pH and temperature in the Celtic Sea. We optimized our model by direct comparison with Fe speciation determined by Adsorptive Cathodic Stripping Voltammetry using the added Fe-binding ligand 1-nitroso-2-naphthol (HNN) in the presence and absence of natural organic matter. We compared determined Fe speciation with simulated titrations obtained via application of the NICA-Donnan model with four different NICA parameter sets representing a range of binding site strengths and heterogeneities. We tested the assumption that binding sites scale to dissolved organic carbon (DOC) concentrations in marine waters. We found that a constant low DOC concentration resulted in an improved fit of our titration data to the simulated titrations, suggesting that inputs of autochthonous marine DOM may not increase the heterogeneity or concentrations of Fe binding sites. Using the optimal parameter set, we calculated pFe(III)´ (−log(∑Fe(OH)i3−i)) and apparent Fe(III) solubility (SFe(III)app) at ambient pH and temperature in the water column of the Celtic Sea. SFe(III)app was defined as the sum of aqueous inorganic Fe(III) species and Fe(III) bound to DOM formed at a free Fe (Fe3+) concentration equal to the limiting solubility of Fe hydroxide (Fe(OH)3(s)). SFe(III)app was within range of the determined dissolved Fe concentrations observed after winter mixing on the shelf and in waters >1500 m depth at our most offshore stations. Our study supports the hypothesis that the ocean dissolved Fe inventory is controlled by the interplay between Fe solubility and Fe binding by organic matter, although the overall number of metal binding sites in the marine environment may not be directly scalable to DOC concentrations.

Palaeo-ecological development and interpretation of the macrofauna inventory (Bivalvia and Gastropoda) in marine Eemian deposits at Warnow Bay (NE Germany)

For the palaeo-ecological development and interpretation of the macrofauna (Bivalvia and Gastropoda) of the Eemian Sea in the southwestern Baltic Sea region (NE Germany), up to date studies and summarising assessments are largely missing. With the main goal of revising the Eemian marine fauna, the authors have undertaken numerous new samplings in recent years. This study begins by focusing on the Warnow Bay in today's Warnow valley near Rostock. In addition to examining older data from the literature, the sandpit at Schwaan and drillings of the State Geological Survey from Boitin, Reez and Rostock were studied. Parallel to this, was also undertaken pollen analyses.Despite hundreds of drillings from the region of the former Warnow Bay, evidence of the marine Eemian was relatively rare. Apparently the sandy sediments were reworked and redistributed by glaciotectonic, glaciofluvial and fluvial processes during the Weichselian glaciation. There is as yet no definite proof of autochthonous marine sediments.They are predominantly shallow-marine sands several meters thick which are found mostly at a depth of about 30–20 m b.s.l. but more rarely also relatively close to the surface in opencast mining or cliff sections.The sands are rich in marine mollusc fauna of which 29 species have been identified so far and which also include Lusitanian specimens such as Acanthocardia paucicostata, Lucinella divaricata or Polititapes senescens. Account was also taken of accompanying marine fauna such as barnacles and echinoderms. In addition, the sediments contain fresh water molluscs also including the interglacial indicator species Belgrandia germanica.

Spatial and temporal distributions of terrestrial and marine organic matter in the surface sediments of the Yangtze River estuary

Riverine supply of largely terrestrial carbon is important to the carbon cycle chemistry of the oceans. Along a river-ocean continuum, sedimentary organic matter composition and distribution can provide insights to the balance of terrestrial input and in situ production of an estuary. In the Yangtze River estuary (YRE), this balance is especially important to understand as human impacts and climate change continue to modify processes along the continuum. Here we discuss the sources and spatio-temporal distributions of organic matter in the coastal ocean surface sediments and how environmental factors have affected changes there. The isotopic compositions (δ13C and δ15N), total organic carbon (TOC), and total nitrogen (TN) of surface sediments were investigated along with sediment grain size and bottom water temperature, salinity, and total suspended matter. Evidence suggests that fine sedimentary grain size, bottom water temperature, and the circulation dynamics of water masses such as Changjiang Diluted Water (CDW) and Taiwan Warm Current (TWC) were the main factors affecting spatial and temporal distributions, with organic matter concentrations in autumn showing higher than that in spring and nearshore areas higher than offshore. An isotopic-based two end-member mixing model suggests that terrigenous inputs were the main source (about 53%) of organic matter in the YRE, followed by autochthonous marine organic matter, in both seasons. Terrestrial organic matter distribution, controlled by the CDW, decreased seaward from the mouth, as expected, and the proportion of terrestrial organic carbon increased in autumn compared to spring. Intrusions of the TWC water likely contributed to the increase of marine components in a tongue-shaped area during both seasons.

Lithological and biogeochemical investigations of the North Atlantic sediment system (data from the 49th cruise of the R/V Akademik Ioffe)

Marine sediments and samples of suspended particulate matter from the North Atlantic were studied. It is shown that modern sedimentation in this area is controlled mainly by the efficiency of autochthonous marine phytoplankton and sediment supply by the system of near-bottom currents, as well as by means of the ice-rafting. The studied sediment sections were formed in the North Atlantic during the Middle Pleistocene to Holocene. The highest sedimentation rate, up to 58.3 cm/kyr, is established for AI-3359 core, collected in the area of the Gardar and Björn Drifts. This makes the core very interesting for detailed paleoreconstructions. AI-3378 and AI-3415 cores are characterized by low sedimentation rates. Nevertheless, they are of interest for spatial paleoreconstructions on a continuous timeline. The general pattern is established for the first time for the sediments from the central North Atlantic: biogeochemically significant processes are detected only in the thin surface layer (0–2 cm) and almost completely cease at depths of 90–180 cm. The processes are probably controlled by the position of the sampling stations and the composition of organic matter (OM) but not related to the age of the sedimentary layer. The low microbial activity in the sediments is most likely the result of a lack of OM.

Lithological and Biogeochemical Investigations of the North Atlantic Sediment System (Data from the 49th Cruise of the R/V Akademik Ioffe)

Marine sediments and samples of suspended particulate matter from the North Atlantic were studied. It is shown that modern sedimentation in this area is controlled mainly by the efficiency of autochthonous marine phytoplankton and sediment supply by the system of near-bottom currents, as well as by means of the ice-rafting. The studied sediment sections were formed in the North Atlantic during the Middle Pleistocene to Holocene. The highest sedimentation rate, up to 58.3 cm/kyr, is established for AI-3359 core, collected in the area of the Gardar and Bjorn Drifts. This makes the core very interesting for detailed paleoreconstructions. AI-3378 and AI-3415 cores are characterized by low sedimentation rates. Nevertheless, they are of interest for spatial paleoreconstructions on a continuous timeline. The general pattern is established for the first time for the sediments from the central North Atlantic: biogeochemically significant processes are detected only in the thin surface layer (0–2 cm) and almost completely cease at depths of 90–180 cm. The processes are probably controlled by the position of the sampling stations and the composition of organic matter (OM) but not related to the age of the sedimentary layer. The low microbial activity in the sediments is most likely the result of a lack of OM.

Comparison between kinetics of autochthonous marine bacteria in activated sludge and granular sludge systems at different salinity and SRTs

Biological nutrient removal performances and kinetics of autochthonous marine biomass in forms of activated sludge and aerobic granular sludge were investigated under different salinity and sludge retention time (SRT). Both the biomasses, cultivated from a fish-canning wastewater, were subjected to stepwise increases in salinity (+2 gNaCl L−1), from 30 gNaCl L−1 up to 50 gNaCl L−1 with the aim to evaluate the maximum potential in withstanding salinity by the autochthonous marine biomass. Microbial marine species belonging to the genus of Cryomorphaceae and of Rhodobacteraceae were found dominant in both the systems at the maximum salinity tested (50 gNaCl L−1). The organic carbon was removed with a yield of approximately 98%, irrespective of the salinity. Similarly, nitrogen removal occurred via nitritation-denitritation and was not affected by salinity. The ammonium utilization rate and the nitrite utilization rate were approximately of 3.60 mgNH4-N gVSS−1h−1 and 10.0 mgNO2-N gVSS−1h−1, respectively, indicating a high activity of nitrifying and denitrifying bacteria. The granulation process did not provide significant improvements in the nutrients removal process likely due to the stepwise salinity increase strategy. Biomass activity and performances resulted affected by long SRT (27 days) due to salt accumulation within the activated sludge flocs and granules. In contrast, a lower SRT (14 days) favoured the discharge of the granules and flocs with higher inert content, thereby enhancing the biomass renewing.The obtained results demonstrated that the use of autochthonous-halophilic bacteria represents a valuable solution for the treatment of high-strength carbon and nitrogen saline wastewater in a wide range of salinity. Besides, the stepwise increase in salinity and the operation at low SRT enabled high metabolic activity and to avoid excessive accumulation of salt within the biomass aggregates, limiting their physical destructuration due to the increase in loosely-bound exopolymers.

Multi-year particle fluxes in Kongsfjorden, Svalbard

Abstract. High-latitude regions are warming faster than other areas due to reduction of snow cover and sea ice loss and changes in atmospheric and ocean circulation. The combination of these processes, collectively known as polar amplification, provides an extraordinary opportunity to document the ongoing thermal destabilisation of the terrestrial cryosphere and the release of land-derived material into the aquatic environment. This study presents a 6-year time series (2010–2016) of physical parameters and particle fluxes collected by an oceanographic mooring in Kongsfjorden (Spitsbergen, Svalbard). In recent decades, Kongsfjorden has been experiencing rapid loss of sea ice coverage and retreat of local glaciers as a result of the progressive increase in ocean and air temperatures. The overarching goal of this study was to continuously monitor the inner fjord particle sinking and to understand to what extent the temporal evolution of particulate fluxes was linked to the progressive changes in both Atlantic and freshwater input. Our data show high peaks of settling particles during warm seasons, in terms of both organic and inorganic matter. The different sources of suspended particles were described as a mixing of glacier carbonate, glacier siliciclastic and autochthonous marine input. The glacier releasing sediments into the fjord was the predominant source, while the sediment input by rivers was reduced at the mooring site. Our time series showed that the seasonal sunlight exerted first-order control on the particulate fluxes in the inner fjord. The marine fraction peaked when the solar radiation was at a maximum in May–June while the land-derived fluxes exhibited a 1–2-month lag consistent with the maximum air temperature and glacier melting. The inter-annual time-weighted total mass fluxes varied by 2 orders of magnitude over time, with relatively higher values in 2011, 2013, and 2015. Our results suggest that the land-derived input will remarkably increase over time in a warming scenario. Further studies are therefore needed to understand the future response of the Kongsfjorden ecosystem alterations with respect to the enhanced release of glacier-derived material.

Benthic nutrient cycling at the sediment-water interface in a lagoon fish farming system (northern Adriatic Sea, Italy)

Metabolism and carbon, oxygen, and nutrient fluxes (DIC, DOC, DO2, NO2−, NO3−, NH4+, PO43− and SiO44−) were studied during three surveys at two sites (VN1 and VN3) located at a fish farm at the Marano and Grado Lagoon (northern Adriatic Sea), using an in situ benthic chamber. Field experiments were conducted in July and October 2015 and March 2016 at a depth of approximately 2 m along the main channels of the fish farm. Water samples were collected by a scuba diver every 2 h in order to investigate daily fluxes of solutes across the sediment-water interface (SWI). Regarding the solid phase, Corg/Ntot and Corg/Porg molar ratios suggested an autochthonous marine origin of the organic matter and a minor preservation of P in the sediments, respectively; high values of sulphur (Stot) were also encountered (0.8–2%). The conditions at VN3 were mostly anoxic with high NH4+ levels (30–1027 μM) and the absence of NO3−. Substantial daily patterns of all solutes occurred especially in autumn and winter. On the contrary, fluxes at VN1 were less pronounced. Usually, inverse correlations appeared between dissolved O2 and DIC trends, but in our system this was observed only at VN3 in autumn and accomplished by a parallel increase in NH4+, PO43− and SiO44− during intense nutrient regeneration. These results are significantly different than those reported for open lagoon environments, where nutrient regeneration at the SWI and in surface sediments is the primary source of nutrients available for assimilation processes, especially during the warmer period of the year when the natural nutrient input by fresh water inflows is limited. Due to the importance of this site for aquaculture, biodiversity and ecosystem services, useful suggestions have been provided from this study in order to improve the quality of this unique aquatic system.

Geochemical impacts of hydrothermal activity on surface deposits at the Southwest Indian Ridge

Submarine hydrothermal circulation has attracted much scientific interest since seafloor hydrothermal activity was first observed in the 1970s; an area of particular interest is the impact of exported inorganic and organic materials from hydrothermal vent systems into the open ocean. In 2007, the first active hydrothermal vent field, with vent fluid temperatures up to 379 °C, was discovered at the ultraslow spreading Southwest Indian Ridge (SWIR), where active vents are much less abundant than fast spreading ridges, and the effect of hydrothermal extrusion on surface sediments is not fully understood. To explore how geochemical proxy signatures respond to hydrothermal activity, we investigated the distributions of elements, minerals and lipids in surficial normal marine sediments, metalliferous sediments and low-temperature hydrothermal deposits collected from the SWIR. The results showed different effects of hydrothermal activity on the surface deposits. The normal marine sediments were predominantly calcium carbonate characterized by > 42% CaO and > 90% calcite, with a significant autochthonous marine contribution to organic matter (OM) and a predominance of lower molecular weight alkanols and fatty acids; they were uninfluenced by hydrothermal activity but received some terrigenous input represented by abundant high molecular weight n-alkanes with an odd-over-even predominance. The near-field metalliferous sediments and hydrothermal deposits were very different. Some near-field metalliferous sediments were influenced by low-temperature hydrothermal activity, and their distributions of elements and minerals were similar to those of hydrothermal deposits, which were characterized by abundant Fe/Si and opal/nontronite. Other near-field metalliferous sediments were evidently influenced by mixing of high-temperature hydrothermal sulfides typically containing abundant Cu/Zn. With respect to the organic matter assemblages, near-field deposits contained little evidence for thermal maturation of organic matter and all were characterized by a strong microbial signature, including hopanoids, isoprenoidal and non-isoprenoidal dialkyl glycerol ether lipids, and low molecular weight n-alkanes with an even carbon number predominance. The far-field metalliferous sediments, despite the influence of non-buoyant plumes and slightly higher concentrations of hydrothermal-derived metals (e.g., Fe, Cu and Zn), had the same distribution of organic lipids and major mineral composition (> 90% calcite) as did normal marine sediments. Thus, the influence of non-buoyant plume inputs appears to have been minimal possibly due to the dilution of in situ microorganisms by normal marine organisms in sediment and seawater. Furthermore, these characteristics indicate inorganic indices based on abundant metal elements derived from the hydrothermal systems (such as Fe/Cu/Zn content, ∑REE/Fe, the ternary diagram of Fe, Cu×100 and Ca) are more sensitive, serving as better proxies than organic matter assemblages to differentiate the effects of diverse hydrothermal activity on surface deposits.

Distribution of mercury species and mercury isotope ratios in soils and river suspended matter of a mercury mining area.

Mercury (Hg) released by mining activities can be dispersed in the environment, where it is subject to species transformations. Hg isotope ratios have been used to track sources in Hg contaminated areas, although it is unclear to what extent variations in δ-values are attributed to distinct Hg species. Hg was mined as Hg sulphide (cinnabar) in Idrija, Slovenia for centuries. Sediments are loaded with mining-residues (cinnabar and calcine), whereas contaminated soils mainly contain Hg bound to natural organic matter (NOM-Hg) related to atmospheric Hg deposition. Hg released from soils and sediments is transported as suspended matter (SM) in the Idrijca river to the Gulf of Trieste (GT), Italy. We determine Hg isotope ratios in river SM, sediments and soils from the Idrijca-catchment to decipher the Hg isotope ratio variability related to Hg species distribution in different grain-size fractions. δ202Hg values of SM collected from tributaries corresponded to those found in soils ranging from -2.58 to 0.19‰ and from -2.27 to -0.88‰, respectively. Speciation measurements reveal that fine fractions (0.45-20 μm) are dominated by NOM-Hg, while larger fractions contain more cinnabar. More negative δ202Hg values were related to higher proportions of NOM-Hg, which are predominant in soils and SM. Rain events increase SM-loads in the river, mainly due to resuspension of coarse grain-size fractions of bottom sediments bearing larger proportions of cinnabar, which leads to more positive δ202Hg values. The large magnitude of variation in δ202Hg and the smaller magnitude of variation in Δ199Hg (-0.37 to 0.09‰) are likely related to fractionation during ore roasting. Soil samples with high NOM-Hg content show more negative δ202Hg values and larger variation of Δ199Hg. More negative δ202Hg values in GT sediments were rather linked to distant sedimentation of soil derived NOM-Hg than to sedimentation of autochthonous marine material. Heterogeneity in the Idrija ore and ore processing likely produce large variations in the Hg isotopic composition of cinnabar and released metallic Hg, which complicate the differentiation of Hg sources. Combining Hg isotope measurements with solid phase Hg speciation reveals that Hg isotope ratios rather indicate different Hg species and are not necessarily symptomatic for Hg pollution sources.

Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment

BackgroundVibrio parahaemolyticus is an autochthonous marine bacterial species comprising strains able to grow in broth containing bile salts at 37 °C, a condition seldom found in the ocean. However, this condition is used for isolation in the laboratory because it is considered a necessary property for pathogenesis. In this context, revealing how gene expression enables V. parahaemolyticus to adapt to this particular condition –common to almost all V. parahaemolyticus isolates- will improve our understanding of the biology of this important pathogen. To determine the genes of V. parahaemolyticus differentially expressed when growing in isolation condition (37 °C, 0.9% NaCl, and 0.04% bile salts) referred to those at the temperature and salt concentration prevailing in ocean south of Chile (marine-like condition; 12 °C, 3% NaCl, and absence of bile salts) we used high-throughput sequencing of RNA.ResultsOur results showed that in the isolation condition, among the 5034 genes annotated in the V. parahaemolyticus RIMD2210633 genome, 344 were upregulated and 433 downregulated referred to the marine-like condition, managing an adjusted P-value (Padj) < E−5. Between the 50 more highly expressed genes, among the small RNAs (sRNA), the three carbon storage regulators B (CsrB) were up four to six times, while RyhB, related to iron metabolism besides motility control, was down about eight times. Among proteins, BfdA, a hemolysin-co-regulated protein (Hcp1) secreted by T6SS1, one of the most highly expressed genes, was about 140 times downregulated in isolation condition. The highest changes in relative expression were found among neighboring genes coding for proteins related to respiration, which were about 40 times upregulated.ConclusionsWhen V. parahaemolyticus is grown in conditions used for laboratory isolation 777 genes are up- or downregulated referred to conditions prevailing in the marine-like condition; the most significantly overrepresented categories among upregulated processes were those related to transport and localization, while secretion and pathogenesis were overrepresented among downregulated genes. Genes with the highest differential expression included the sRNAs CsrB and RhyB and the mRNAs related with secretion, nutritional upshift, respiration and rapid growing.

High resolution characterization of a core from the Lower Jurassic Gordondale Member, Western Canada Sedimentary Basin

The Gordondale Member is a hydrocarbon source rock and potential unconventional reservoir that extends across northeastern British Columbia and central-northwestern Alberta. It is an organic-rich, calcareous, fossiliferous mudstone with a median total organic carbon value of 6.0 wt%. A total of 230 samples were collected from approximately 25 m of Gordondale Member core for organic matter analysis using Rock-Eval 6 analysis and organic petrology. Detailed core logging provides sedimentological context for organic matter characterization. The predominant organic material in the samples is solid bitumen and liptinite with lesser zooclast and inertinite. Most kerogen is Type II, autochthonous marine biomass, with minimal dilution by inert organic carbon. Rock-Eval Tmax values and random reflectance measurements of solid bitumen indicate the samples are within the oil generation window. Solid bitumen contributes a substantial amount of hydrocarbon potential to the interval. A micro-reservoir structure within the core is produced by thin intervals of impermeable displacive calcite that act as barriers to the upward migration of free hydrocarbons. These free hydrocarbon accumulations could make excellent targets for horizontal wells within the Gordondale Member.

Palynofacies classification of the depositional elements of confined turbidite systems: Examples from the Gres d'Annot, SE France

Turbidites deposited in confined mini-basins may demonstrate extremely complex stratigraphic architectures. We hypothesize that particulate organic matter preserved in turbidites will not be randomly distributed and may be used to assist the identification of architectural elements. An integrated sedimentological and palynological study was conducted on confined turbidites in the Peïra Cava sub-basin of the Eocene to Oligocene Grès d'Annot system, SE France; this provides a natural laboratory, where certainty in the stratigraphy allows confidence in sampling of sub-environments. Elements reflect deposits from high and low density flows including: thin-beds that onlap the basin margin and heterolithics spread across the basin; base of slope megabeds; and thick-beds that have a proximal to distal expression from south to north across the basin. One hundred samples were collected from logged sections across the basin, with 10 g of mudstone per sample being processed for a count of three hundred pieces of organic matter. Both allochthonous terrestrial and relatively autochthonous marine matter were recovered, with results showing a progressive fining of material from proximal to distal areas. Base of slope megabeds and proximal ponded thick-beds are dominated by dense humic matter, medial areas become dominated by light plant material, and distal samples are dominated by amorphous matter, interpreted as a result of density sorting of organic matter in turbidity currents. Exploratory ordination analysis and fuzzy cluster analysis were used to examine these results. Based on this study, we provide evidence of density fractionation of organics in turbidity currents, which is implied to be a major control on the distribution of particles in deep-marine depositional systems. This allows a palynofacies classification scheme to be developed to recognise architectural elements, which may be applied to sub-surface samples to assist the characterization of deep-water mini-basin architecture, understanding of which is crucial for hydrocarbon exploration and development.

Diverse origins and pre-depositional histories of organic matter in contemporary Chinese marginal sea sediments

Marginal seas are estimated to account for up to 90% of organic carbon (OC) burial in marine sediments, and thus play an important role in global carbon cycle. However, comprehensive assessments of carbon budgets for marginal sea systems are challenging due to their inherent complexity, with spatial and temporal variability in carbon inputs and dispersal processes. We examine the Bohai Sea and Yellow Sea (BS–YS) in order to further our understanding of sedimentary OC delivery, translocation and accumulation in a shallow marginal sea system. Bulk properties and the content and isotopic compositions (Δ14C, δ13C) of source-specific plant wax n-alkyl lipid biomarkers were determined for a suite of surficial sediment samples. Variable δ13C values (−25.1‰ to −28.5‰) and contemporary radiocarbon ages of short-chain n-fatty acids (FAs; C16, C18) reflect modern autochthonous marine and/or fresh terrestrial plant input. In contrast, extremely depleted Δ14C values (−932‰ to −979‰) of short-chain n-alkanes (C16, C18) suggest a predominant input from sedimentary rocks (petrogenic OC) or petroleum. Abundance-weighted average δ13C and Δ14C values of long-chain leaf wax lipids (C26+28+30n-FAs, C24+26+28n-alkanols, C27+29+31n-alkanes) are −29.1±1.1‰ to −30.2±0.3‰, and −286±150‰ to −442±119‰, respectively, illustrating that terrestrial OC delivery is dominated by pre-aged (∼3000–500014Cyrs) C3 vegetation sources.A coupled carbon-isotopic mixing model, based on the bulk and compound-specific biomarker δ13C and Δ14C values, is used to partition the BS–YS sedimentary OC into three components that reflect both origins and transport processes. For all sampling sites, 31–64% is modern/contemporary OC, 24–49% is pre-aged terrestrial OC, and 7–26% is fossil OC, the latter likely derived from both physical erosion of ancient sedimentary rocks and fossil fuel sources. Pre-aged soil OC is most prominent in front of the modern and old Huanghe (Yellow River) delta (48% and 49%), and fossil OC is most significant north of the old Huanghe mouth (26%). Significant pre-aged soil contributions (33%) are also evident for sites further offshore, where transport and deposition of eolian dust supply may be important. For the three major deposition areas of the BS–YS system (Bohai Basin, sub-aqueous Huanghe delta and central south YS basin), we estimate that about 3.02Mt/yr of refractory, plant-derived pre-aged soil OC and 0.98Mt/yr of 14C-depleted fossil OC accumulates in surface sediments, corresponding to 35% and 11% of sediment TOC, respectively. Compared with estimates for fluxes from corresponding sources, the burial efficiency is close to 100% for pre-aged soil OC and 70% for fossil OC, implying efficient OC burial in delta and shelf environments. Re-burial of these two pools of terrigenous OC only affects carbon cycling on millennial and longer timescales respectively, and exerts little influence on the modern carbon cycle (<100yr). Carbon isotopic compositions of source specific biomarkers are a useful tool not only for constraining OC sources and transport vectors, but also for delineating their impact on the contemporary carbon cycling in marginal sea systems.

Characterization of deep-marine channel-levee complex architecture with palynofacies: An outcrop example from the Rosario Formation, Baja California, Mexico

Identification of specific elements of a deep-marine system currently relies on detailed sedimentological studies, which can be problematic with sub-surface targets. Here we propose identification of specific architectural elements with palynofacies, hypothesizing that organic matter will not be uniformly spread in turbidite successions. An integrated sedimentological and palynological study was conducted on outcrops of an Upper Cretaceous – Paleocene, slope channel-levee complex, of the Rosario Fm., Baja California. System architecture is well constrained by previous work, allowing certainty in sample placement. Architecture reflects a lateral progression from channel axis to distal elements, via overbank terrace; internal levees within the channel-belt; channel-bounding external levee, with an inner and outer component, grading into hemipelagites. Two hundred samples, placed in sedimentary logs, were collected from mudstones across the system. 10 g of sediment per sample was processed for analysis of three hundred pieces of organic matter. Samples display a range of both allochthonous terrestrial and relatively autochthonous marine matter. Results show a decrease in sorting of matter away from the channel axis, where dense humic materials are dominant. Lighter particles, e.g. plant cuticle, were retained in suspension at lower energy, being preferentially deposited in channel distal settings. Exploratory ordination analysis was used to explore these trends. The primary mechanism inferred for this distribution is hydrodynamic sorting, as the competence of turbidity currents to transport particles reduces with distance from the sediment conduit. Variation in palynofacies observed in the architectural elements allows a classification scheme to be developed, enabling recognition of depositional sub-environments within deepwater systems. This scheme can now be applied to subsurface samples to assist characterization of subsurface deepwater channel-levee complex architecture, understanding of which is vital for hydrocarbon exploration.

Hydrocarbon potential and depositional environments of Oligo-Miocene rocks in the Eastern Carpathians (Vrancea Nappe, Romania)

The Oligocene to early Miocene fine-grained succession in the Eastern Carpathians includes, from base to top the Lower Menilite (LMM), Bituminous Marl (BMM), Lower Dysodilic Shale (LDSM), and Upper Dysodilic Shale (UDSM) members. These stratigraphic units, constituting the main hydrocarbon source rocks in the Eastern Carpathians, have been studied in an outcrop section to determine its depositional environment and hydrocarbon potential.The LMM contains high amounts of TOC, but because of low thickness its source potential is limited. The organic matter of the overlying BMM is mainly derived from autochthonous marine organisms including bacterial biomass. TOC contents are moderate because of dilution by carbonate minerals. Calcareous nannoplankton dates the BMM into nannoplankton zones NP21-22. Salinity and redox conditions varied from reduced to slightly enhanced and from strictly anoxic to dysoxic. The LDSM contains carbonate-free black shale and sandstone beds deposited in a depositional lobe under anoxic conditions. Despite of high HI values, land plants form a significant part of the organic matter. Channel fill sediments form the top of the LDSM. The lower part of the early Miocene UDSM accumulated in a lobe, whereas its upper part represents a basin plain setting. MTTC ratios reflect a trend from slightly enhanced to slightly decreased normal marine salinity. The presence of aryl-isoprenoids suggests a temporary photic zone anoxia controlled by salinity variations. Both marine and terrestrial biomass contributed to the organic matter. A major change towards oxic conditions occurred at the boundary between the UDSM and the overlying Gura Soimului Formation.The studied succession can generate 6 t of hydrocarbons per square meter. All members are oil prone, but yield oil with different biomarker characteristics. This allows the identification of oil generated from different lithostratigraphic units.

Comparative organic geochemistry of Indian margin (Arabian Sea) sediments: estuary to continental slope

Abstract. Surface sediments from sites across the Indian margin of the Arabian Sea were analysed for their elemental and stable isotopic organic carbon (Corg) and total nitrogen compositions, grain size distributions and biochemical indices of organic matter (OM) source and/or degradation state. Site locations ranged from the estuaries of the Mandovi and Zuari rivers to depths of ~ 2000 m on the continental slope, thus spanning nearshore muds and sands on the shelf and both the oxygen minimum zone (OMZ) on the upper slope (~ 200–1300 m) and the seasonal hypoxic zone that appears on the shelf. Source indices showed mixed marine and terrigenous OM within the estuaries, but consistent predominance (80–100%) of marine OM on the shelf and slope. Thus, riverine terrigenous OM is diluted or replaced by autochthonous marine OM and/or is efficiently re-mineralised, within or immediately offshore of the estuaries. Organic C contents of surface shelf sediments varied from &lt; 0.5 wt% in relict shelf sands to up to ~ 4 wt% for nearshore muds, while upper slope sites within the OMZ showed a wide range (~ 2 to 7 + wt%), progressively decreasing below the OMZ to ≤ 1 wt% at 2000 m. Thus, major variability (~ 5 wt%) was found at slope sites within the OMZ of similar depth and near-identical bottom-water O2 concentrations. A strong relationship between %Corg and sediment grain size was seen for sediments within the OMZ, but lower relative Corg contents were found for sites on the shelf and below the OMZ. Further, Corg loadings, when related to estimated sediment surface area, indicated distinct enrichment of Corg in the OMZ sediments relative to sites above and below the OMZ and to sediments from normoxic margins. Diagenetic indices confirmed that lower Corg content below the OMZ is associated with more extensive OM degradation, but that shelf sediment OM is not consistently more degraded than that found within the OMZ. Together, the results indicate that OM distribution across the margin is controlled by interplay between hydrodynamic processes and varying preservation associated with O2 availability. This inference is supported by multiple regression analysis. Hydrodynamic processes (expressed as %Silt) followed by O2 availability, can explain the large majority of %Corg variability when the shelf and slope are considered as a whole. However, while O2 becomes the primary influence on %Corg for sediments below the OMZ, %Silt is the primary influence across the OMZ and, apparently, the shelf. Thus, reduced O2 exposure is responsible for OM enrichment within the OMZ, but hydrodynamic processes are the overriding control on sediment OM distributions across both the shelf and the OMZ.

Organic matter–apatite–pyrite relationships in the Botneheia Formation (Middle Triassic) of eastern Svalbard: Relevance to the formation of petroleum source rocks in the NW Barents Sea shelf

The Middle Triassic Botneheia Formation of eastern Svalbard (Edgeøya and Barentsøya) comprises an organic carbon-rich, fine-grained clastic succession (∼100 m thick) that makes the best petroleum source rock horizon in the NW Barents Sea shelf. The succession records a transgressive–regressive interplay between the prodelta depositional system sourced in the southern Barents Sea shelf (black shale facies of the lower and middle parts of the Muen Member) and the open shelf phosphogenic system related to upwelling and nutrient supply from the Panthalassic Ocean (phosphogenic black shale facies of the upper part of the Muen Member and the Blanknuten Member). The relationships between organic matter, authigenic apatite, and pyrite in these facies allow to characterize the relative roles of redox conditions and oceanic productivity in the organic carbon preservation. The accumulation of terrestrial and autochthonous marine organic matter in the black shale facies occurred under dominating oxic conditions and increasing-upward productivity related to early transgressive phase and retrogradation of the prodelta system. The phosphogenic black shale facies deposited in an oxygen-minimum zone (OMZ) of the open shelf environment during the late transgressive to regressive phases under conditions of high biological productivity, suppressed sedimentation rates, and changing bottom redox. The phosphatic black shales occurring in the lower and upper parts of the phosphogenic succession reveal depositional conditions indicative of the shallower part of OMZ, including high input of autochthonous organic matter into sediment, oxic-to-dysoxic (episodically suboxic and/or anoxic) conditions, intense phosphogenesis, and recurrent reworking of the seabed. The massive phosphatic mudstone occurring in the middle of the phosphogenic succession reflects the development of euxinia in the deeper part of OMZ during high-stand of the sea. High input of autochthonous organic matter in this environment was coupled with mineral starvation and intermittent phosphogenesis. In mature sections in eastern Svalbard, the petroleum potential of the Botneheia Formation rises from moderate to good in the black shale facies, and from good to very good in the phosphogenic black shale facies, attaining maximum in the massive phosphatic mudstone.