Australian Sheep Flocks Research Articles

An analysis of fertility and fecundity in the Australian sheep flock between 2006 and 2019

After decades of decline, the Australian sheep flock aspires to rebuild its population of breeding ewes. A successful, rebuild will rely on high pregnancy rates and number of lambs born and reared. To examine this potential, a cross-sectional study of historical ultrasound pregnancy scanning records was undertaken using records collated from two experienced sheep pregnancy scanning businesses (years 2006 to 2019) from 15,397 mobs of ewes, totalling 7,443,314 ewes. Client details were de-identified and excluded from analyses, but details describing the mobs were retained when available, such as season of mating, production zone, ewe age, and breed. The key finding was a mean pregnancy rate (ewes pregnant per ewe scanned) of 0.76 ± 0.24, with a median of 0.83. Mobs scanned to identify fetal number had a higher mean (0.84 ± 0.15) and median (0.89) pregnancy rate. The mean reproduction rate (fetuses per ewe scanned) was 1.21 ± 0.27 and the median was 1.25. Differences were observed between the factors including age, breed, season, year or production zone but all results were lower than anticipated. The unexpected findings imply a problem exists with the fertility of many Australian sheep flocks.

Are alpacas especially protective of lambs? An insight into alpaca guardian behaviour towards sheep using an arena preference test

Alpacas are increasingly used as a guardian species in Australian sheep flocks in an effort to improve lamb survival rates. Yet little is documented about the role and mechanisms of alpaca guarding behaviours within this environment. The first phase of this study, evaluated the temperament of 44 alpacas by assessing their behaviour when individuals were separated from herd mates. Tests included agitation while in an isolation enclosure, flight speed and behaviour in observation arena tests. The second phase of the study evaluated alpaca responses to different auditory, olfactory and visual cues representative of young lambs, adult sheep (ewes) and other novel stimuli. Alpacas (n = 24) which had not previously been exposed to sheep were individually presented with stimuli in a test arena. Behavioural responses were recorded over 2 min and analysed to compare differences between stimuli type (lamb/ewe/other) and stimuli cue form (live animal/auditory only/olfactory only/visual only). In phase one of this study alpacas exhibited little agitation while retained in an isolation enclosure with 67% of animals demonstrating a low agitation score. Females appeared to have a more ‘reactive’ temperament than males, exhibiting significantly faster flight speeds (P < 0.01) and more frequent pacing behaviour (P < 0.01) in the observational pen. In the arena test both male (n = 12) and female (n = 12) alpacas consistently exhibited greater attraction towards the lamb stimuli type (for all cue forms) compared to the ewe and other atypical stimuli (P < 0.05 for all comparisons). Alpacas showed the greatest attraction towards the live lamb compared to visual (P < 0.01), auditory (P < 0.01) and olfactory lamb cues (P < 0.001). Both male and female alpacas demonstrated similar response times and there were no significant differences between alpaca sex in the total time spent reacting to the lamb and ewe stimuli. This study demonstrates that alpacas exhibit a greater attraction towards or interest in young vulnerable animals such as lambs and supports the available anecdotal evidence that the use of alpacas as livestock guardians may be useful in improving lamb survival rates.

Development of molecular detection methods of Bovicola ovis from sheep fleece

The sheep body louse (Bovicola ovis) commonly referred to as sheep lice are small chewing ectoparasites of sheep. Infection results in significant economic costs to the Australian sheep industry due to reduced wool quality caused by chronic itching from sheep rubbing and biting fleece. Treatment relies on use of insecticides; however, resistance has developed against pyrethroid and other insect growth regulator lousicides. There is urgent need to develop cost-effective lice management to reduce the use of insecticides, with the application of insecticidal treatments only applied when an infestation is detected. However, the current detection method relies on fleece parting for detection of B. ovis which is highly dependent on the skill of the inspector, the number of sheep examined, and the prevalence and severity of the infestation. To improve B. ovis detection, a highly sensitive (5 × 10−8 ng/μL) and specific multiplex quantitative PCR which simultaneously detects sheep lice and sheep DNA was developed. In addition, a B. ovis loop-mediated isothermal amplification (LAMP) assay was developed for field use. The B. ovis LAMP (Bov-LAMP) assay was optimized to reliably detect B. ovis from wool samples down to 5 × 10−6 ng/μL, with time to positive (Tp) < 10 min. Both assays demonstrate high sensitivity and specificity, enabling rapid identification of B. ovis DNA from sheep fleece samples and have the capacity to be used for ongoing management and surveillance of B. ovis in Australian sheep flocks.

Proximity sensors provide an accurate alternative for measuring maternal pedigree of lambs in Australian sheep flocks under commercial conditions

Context Proximity sensors were used recently to determine the maternal pedigree of lambs on a small plot with high accuracy. If this accuracy is maintained under commercial grazing conditions, this method could be a useful alternative to improving genetic gain in sheep, including reproduction traits. Aims To investigate using proximity sensors to determine the maternal pedigree of lambs and to define the level of interactions required to determine maternal pedigree confidently irrespective of differences in ewe age, lamb age, birth type, paddock size, flock size or stocking rate under commercial grazing conditions. Methods We compared maternal pedigree determined using the proximity sensors to DNA profiling (n = 10 flocks) and lambing rounds (n = 16 flocks). Ewes (n = 7315) and lambs (n = 8058) were fitted with proximity sensors under normal grazing conditions for each property for 1–3 days. Flocks varied in ewe age (adults, hoggets and ewe lambs), lamb age (up to 100 days old, except for 1 flock), birth type (singles, multiples), paddock size (0.25–320 ha), flock size (37–420 lambs) and stocking rate (2–100 dry sheep equivalents/ha, except for 1 flock). Key results An interaction ratio of &gt;2 was required for a confident ewe–lamb match (ewe with the most interactions compared with the ewe with the second-most interactions for each lamb). Using this criterion, the average success of proximity sensors at matching a lamb to a ewe was 95% and the sensors were 97% accurate when compared with the pedigree results from lambing rounds or DNA. For lambs matched successfully, over 90% of this success was achieved in the first 7 h and over 99% in the first 20 h. While the success rate of matching a lamb to a ewe was not influenced significantly by ewe age, birth type, paddock size, flock size or stocking rate, the time to achieve sensor success was significantly quicker for singles than for twins and sensor accuracy was significantly higher for smaller paddocks with higher stocking rates. Conclusions Our results showed that proximity sensors can establish maternal pedigree effectively and accurately across a range of conditions experienced on commercial properties. Implications Private industry can now develop more cost-effective sensor technologies with greater confidence that will enhance recording of maternal pedigree and, hence, the rate of genetic gain across the sheep industry.

Relationship between Toxoplasma gondii seroprevalence and lamb marking in South Australian sheep flocks.

Toxoplasmosis in sheep has negative impacts on reproductive performance. This study aimed to estimate the prevalence in Toxoplasma gondii infection in the South Australian sheep population, and assess any association between within-flock prevalence and reproductive efficiency (measured by lamb marking percentage), climatic region and rainfall. A total of 875 individual mixed-age breeding ewes from 29 South Australian properties were blood sampled with an average of 30.2 ewes per property (min 28, max 32). Sera were tested for T. gondii-specific IgG antibody using a commercial Modified Agglutination Test kit. Overall, 209 of 875 (23.9%; 95% confidence interval [CI] 16.3% to 31.4%) of individual ewes tested seropositive for T. gondii-specific IgG antibodies, with a flock level seroprevalence of 28/29 (96.6%, 95% CI 96.6% to 100%). On individual farms, the seroprevalence ranged from 0% to 93.3%. Analysis showed that Kangaroo Island properties had significantly higher mean seroprevalence than any mainland climatic regions, and that the mainland regions did not significantly differ from each other. Linear regression revealed a significant association between seroprevalence and lamb marking percentage, with a slope of -5.4% lamb marking per +10% seroprevalence.

A spatial analysis of risk factors for sarcocystosis in South Australian sheep flocks, 2007-2017

Event Abstract Back to Event A spatial analysis of risk factors for sarcocystosis in South Australian sheep flocks, 2007-2017 Patrick L. Taggart1, Mark Stevenson2*, Simon Firestone2, Milton McAllister1 and Charle Caraguel1 1 School of Animal and Veterinary Sciences, Faculty of Sciences, University of Adelaide, Australia 2 Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Australia Cat-borne parasites and their associated diseases have substantial impacts on human, livestock, and wildlife health worldwide. Despite this, large and detailed data sets that allow researchers to study broad-scale trends in the ecology of cat-borne diseases are either difficult to obtain or non-existent. In sheep (Ovis aries), one cat-borne parasite that is easily detected at slaughter is macroscopic sarcocystosis. This was an analysis of factors influencing the geographic distribution of sarcocystosis among sheep farms in South Australia. Data were obtained from two slaughterhouses which processed 3,865,608 sheep from 4,204 farms across 385,468 km2 of South Australia’s land mass for the period 2007 to 2017. A Poisson point process model was developed to quantify environmental characteristics associated with higher densities of sarcocystosis-positive farms. Sarcocystosis-positive farms were concentrated on Kangaroo Island (located a short distance from the South Australian mainland) and the density of sarcocystosis-positive farms increased in areas with acid soils and soils with relatively high clay content. Unit increases in soil pH decreased the intensity of sarcocystosis-positive farms by a factor of 0.86 (95% CI 0.78 to 0.95). Where soil clay content was ≥16.5% sarcocystosis-positive farm density was increased by a factor of 1.45 (95% CI 1.10 to 1.92) compared with farms in areas where soil clay content was <14.5%. The density of sarcocystosis-positive farms on Kangaroo Island was 15.2 (95% CI 8.04 to 28.9) times greater than the density of sarcocystosis-positive farms located in the Adelaide Hills/Fleurieu Peninsula. Our analyses show a marked heterogeneous distribution of macroscopic ovine sarcocystosis across South Australia with a clear hotspot on Kangaroo Island. Since the density of feral cats on Kangaroo Island is relatively high we hypothesize that region in this analysis was confounded by, and acted as a proxy for, cat density. Whilst management of soil pH and/or soil clay content provide some opportunity to reduce the risk of sarcocystosis in South Australian sheep, we propose that control of feral cat populations is the most feasible and sustainable approach to sarcocystosis control. Acknowledgements Primary Industries and Regions, South Australia Biosecurity, Elise Matthews, Celia Dickason, Adrian Baddeley, Rolf Turner, and Tilman Davies. References Taggart, P., Stevenson, M., Firestone, S., McAllister, M., Caraguel, C., 2019. Spatial analysis of a cat-borne disease reveals that soil ph and clay content are risk factors for sarcocystosis in sheep. Frontiers in Veterinary Science. DOI: 10.3389/fvets.2019.00127. Keywords: Poisson point process modelling, Feral cats, surveillance, Spatial Epidemiology, Sarcocystosis Conference: GeoVet 2019. Novel spatio-temporal approaches in the era of Big Data, Davis, United States, 8 Oct - 10 Oct, 2019. Presentation Type: Regular oral presentation Topic: Spatial methods for environmental & exposure epidemiology and climate change Citation: Taggart PL, Stevenson M, Firestone S, McAllister M and Caraguel C (2019). A spatial analysis of risk factors for sarcocystosis in South Australian sheep flocks, 2007-2017. Front. Vet. Sci. Conference Abstract: GeoVet 2019. Novel spatio-temporal approaches in the era of Big Data. doi: 10.3389/conf.fvets.2019.05.00060 Copyright: The abstracts in this collection have not been subject to any Frontiers peer review or checks, and are not endorsed by Frontiers. They are made available through the Frontiers publishing platform as a service to conference organizers and presenters. The copyright in the individual abstracts is owned by the author of each abstract or his/her employer unless otherwise stated. Each abstract, as well as the collection of abstracts, are published under a Creative Commons CC-BY 4.0 (attribution) licence (https://creativecommons.org/licenses/by/4.0/) and may thus be reproduced, translated, adapted and be the subject of derivative works provided the authors and Frontiers are attributed. For Frontiers’ terms and conditions please see https://www.frontiersin.org/legal/terms-and-conditions. Received: 01 Jun 2019; Published Online: 27 Sep 2019. * Correspondence: Prof. Mark Stevenson, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, Victoria, VIC 3010, Australia, mark.stevenson1@unimelb.edu.au Login Required This action requires you to be registered with Frontiers and logged in. To register or login click here. Abstract Info Abstract The Authors in Frontiers Patrick L Taggart Mark Stevenson Simon Firestone Milton McAllister Charle Caraguel Google Patrick L Taggart Mark Stevenson Simon Firestone Milton McAllister Charle Caraguel Google Scholar Patrick L Taggart Mark Stevenson Simon Firestone Milton McAllister Charle Caraguel PubMed Patrick L Taggart Mark Stevenson Simon Firestone Milton McAllister Charle Caraguel Related Article in Frontiers Google Scholar PubMed Abstract Close Back to top Javascript is disabled. Please enable Javascript in your browser settings in order to see all the content on this page.

Seed contamination in sheep: new investigations into an old problem

Seed contamination significantly affects production capacity and animal welfare in Australian sheep flocks and causes considerable financial loss to producers and processors across sheepmeat value chains. Seven grass-weed species contribute to seed contamination in Australia, with barley grass (Hordeum spp.) identified as a key perpetrator. Herbicide resistance and variable dormancy emerging in southern Australian barley grass populations are thought to enhance its capacity for successful pasture invasion, further exacerbating the potential for seed contamination in sheep. The present article reviews the current literature regarding the impact and incidence of seed contamination on sheepmeat production, with particular reference to key grass-weed species prevalence across Australia. Data are presented on a recent incidence of carcass contamination across years, where incidence varied between 11% and 80% from 2009 to 2013, contracting to between 2% and 60% during 2014 and 2015. Key areas requiring future research are defined. Understanding the biology of key grass weeds, historical influences and economic consequences associated with seed contamination in sheep may assist in defining future risks to sheep production and improve weed management. Furthermore, examining more recent data describing the current status of seed contamination across Australia and the associations with causal weed species may aid the development of critical weed-management strategies in highly infested regions, subsequently limiting the extent of future seed contamination.

Clinical, diagnostic and pathologic features of presumptive cases of Chlamydia pecorum-associated arthritis in Australian sheep flocks.

BackgroundArthritis is an economically significant disease in lambs and is usually the result of a bacterial infection. One of the known agents of this disease is Chlamydia pecorum, a globally recognised livestock pathogen associated with several diseases in sheep, cattle and other hosts. Relatively little published information is available on the clinical, diagnostic and pathologic features of C. pecorum arthritis in sheep, hindering efforts to enhance our understanding of this economically significant disease. In this case series, a combination of standard diagnostic testing used routinely by veterinarians, such as the Chlamydia complement fixation text (CFT), veterinary clinical examinations, and additional screening via C. pecorum specific qPCR was used to describe putative chlamydial infections in five sheep flocks with suspected ovine arthritis.Case presentationFive separate cases involving multiple lambs (aged six to ten months) of different breeds with suspected C. pecorum arthritis are presented. In two of the five cases, arthritic lambs exhibited marked depression and lethargy. Arthritis with concurrent conjunctivitis was present in four out of five lamb flocks examined. Chlamydia CFT demonstrated medium to high positive antibody titres in all flocks examined. C. pecorum shedding was evident at multiple sites including the conjunctiva, rectum and vagina, as determined via qPCR. Two of the five flocks received antimicrobials and all flocks recovered uneventfully regardless of treatment.ConclusionThis case series highlights the features a field veterinarian may encounter in cases of suspected ovine chlamydial arthritis. Our analysis suggests a presumptive diagnosis of chlamydial arthritis in lambs can be made when there is evidence of joint stiffness with or without synovial effusion and elevated chlamydia antibody titres. C. pecorum-specific qPCR was found to be a useful ancillary diagnostic tool, detecting Chlamydia positivity in low or negative CFT titre animals. Variables such as symptom duration relative to sampling, sheep breed and farm management practices were all factors recorded that paint a complex epidemiological and diagnostic picture for this disease. These case studies serve to provide a platform for further research to improve diagnostic testing and new treatment and control strategies for C. pecorum infections in sheep.

Fertility of Herbivores Consuming Phytoestrogen-containing Medicago and Trifolium Species

Despite their unrivalled value in livestock systems, certain temperate, pasture, legume species and varieties may contain phytoestrogens which can lower flock/herd fertility. Such compounds, whose chemical structure and biological activity resembles that of estradiol-17α, include the isoflavones that have caused devastating effects (some of them permanent) on the fertility of many Australian sheep flocks. While the persistence of old ‘oestrogenic’ ecotypes of subterranean clover (Trifolium subterraneum) in pasture remains a risk, genetic improvement has been most effective in lowering isoflavone production in Trifolium species; infertility due to ‘clover disease’ has been greatly reduced. Coumestans, which can be produced in Medicago species responding to stress, remain a potential risk in cultivars susceptible to, for example, foliar diseases. In the field, coumestrol is often not detected in healthy vegetative Medicago species. Wide variation in its concentration is influenced by environmental factors and stage of growth. Biotic stress is the most studied environmental factor and, in lucerne/alfalfa (Medicago sativa), it is the major determinant of oestrogenicity. Concentrations up to 90 mg coumestrol/kg (all concentrations expressed as DM) have been recorded for lucerne damaged by aphids and up to 600 mg/kg for lucerne stressed by foliar disease(s). Other significant coumestans, e.g., 4’-methoxy-coumestrol, are usually present at the same time. Concentrations exceeding 2000 mg coumestrol/kg have been recorded in diseased, annual species of Medicago. Oestrogenicity of some Medicago species is also influenced by maturity and senescence. Studies in Israel, North America, Europe, New Zealand and Australia have confirmed that coumestans in lucerne, represent an acute or sub-acute loss of reproductive efficiency in herbivores, e.g., sheep, cattle, and possibly horses. When sufficiently exposed peri-conception, coumestrol, sometimes present in lucerne, be it as pasture, hay, silage, pellets, meal, and sprouts, is associated with what can be an insidious, asymptomatic, infertility syndrome. Most livestock research with oestrogenic lucerne has been conducted with sheep. Ewes may be at risk when the coumestrol concentration in their diet exceeds 25 mg/kg. In studies where lambing was compared for lucerne and a phytoestrogen-free treatment, the mean decrease in lambs born/ewe was 13%; ewes on lucerne, exhibited a lower frequency of multiple births.

Prevalence, faecal shedding and genetic characterisation of Yersinia spp. in sheep across four states of Australia.

To develop molecular tools for the investigation of the prevalence, species and faecal shedding of Yersinia in sheep. A quantitative PCR (qPCR) targeting the β subunit of the Yersinia spp. RNA polymerase gene was developed and validated. The prevalence of pathogenic Y. enterocolitica was determined by screening for the virulent yst gene. These qPCR assays were used to determine Yersinia spp. prevalence and faecal shedding concentration from 3412 faecal samples collected from approximately 1189 lambs (100-180 lambs/flock) on eight farms across Australia. This was a longitudinal study, with sheep sampled on three occasions (weaning, post-weaning and pre-slaughter). A subset of up to five positive samples from each sampling on each farm (n = 111) was sequenced. Yersinia spp. (including both pathogenic and non-pathogenic species) were identified in all flocks, with 60.7% of lambs shedding Yersinia spp. on at least one sampling occasion. Point prevalence ranged from 4% to 91% across farms and sampling occasions. Median Yersinia spp. bacterial concentration was 1.1 × 10(6) , 2.8 × 10(6) and 5.6 × 10(5) organisms/g faeces at weaning, post-weaning and pre-slaughter, respectively, across all farms. Pathogenic Y. enterocolitica was identified in all eight flocks sampled, with 14.8% of lambs shedding pathogenic Y. enterocolitica on at least one sampling occasion. Yersinia spp. and pathogenic Y. enterocolitica in particular were commonly identified in a sample of Australian sheep flocks using molecular techniques. Further studies into associations between faecal shedding of pathogenic Yersinia spp. and sheep productivity or clinical disease may utilise qPCR in conjunction with other diagnostic tools.

A review of the genetic and epigenetic factors affecting lamb survival

Poor lamb survival pre-weaning is a major source of reproductive inefficiency in Australian sheep flocks. While nutrition and management options have been extensively researched and promoted to improve lamb survival, the present review focuses on the prospects for obtaining genetic gain and helps identify selection strategies for boosting such gains to improve overall reproductive efficiency in the Australian sheep industry. Estimated heritability for lamb survival using linear model analysis is low, although use of threshold models suggests that heritability could be higher, which, if true, could help explain the substantial genetic gains obtained in long-term selection experiments. Epigenetic mechanisms may hinder selection and quantitative trait-loci identification through confounding and/or masking genetic variances and co-variances. With sufficient information, these effects could be considered in genetic evaluations by identifying those components that are amenable to selection. Regarding indirect selection, finding effective criteria for improving lamb survival has proved elusive. Most measures of maternal behaviour, temperament and lambing difficulty researched are poorly correlated genetically with lamb survival. Of lamb behaviours and thermo-genic indicators studied, latency to bleat following handling by humans is moderately genetically correlated with lamb survival, as is neonatal rectal temperature. Industry application remains to be adequately explored for the more promising of these measures. Finally, in lieu of direct selection for lamb survival, there is merit in selecting for multiple-rearing ability or its equivalent, possibly with additional selection criteria for lamb survival and reproductive efficiency.

Use of local anaesthesia for pain management during husbandry procedures in Australian sheep flocks

Mulesing (removal of breech skin for blowfly strike control), castration, tail-docking and ear-knotching are routine husbandry procedures conducted on many millions of lambs annually in Australia, causing considerable pain and suffering. However, establishing an effective alternative to mulesing is proving to be a difficult and prolonged process. This is particularly so for producers of high-quality fine wool from Merino sheep that have been selected over many generations for skin wrinkle to increase yields, increasing their susceptibility to flystrike by Lucilia cuprina. In late 2005, a spray-on product formulation containing two topical analgesia agents (lignocaine and bupivacaine) for pain relief at mulesing has become commercially available. Increasingly, fine-wool growers have been choosing to continue surgical mulesing, but adopting pain alleviation at surgical mulesing to reduce suffering. This product has led to the development of the “Better Choices” program, in an effort to meet international concerns that mulesing without pain relief was cruel. Studies have been conducted on the use of these products for decrease of pain induced by surgical mulesing, castration and tail-docking. A technique has been developed to measure pain through assessment of wound sensitivity using Von-Frey Hair stimulation, measuring local involuntary reflexes and central cognition. These responses were graded using a numerical rating scale. Behavioural responses to pain were analysed by video. A novel technique was developed to assess the rate of wound healing by digital photography and computerized surface area measurement. Also, a method of application was developed at castration, which enabled analgesia of the remaining scrotal contents, with impressive results compared to other methods of castration such as the use of rubber rings. Findings from a series of field and pen trials indicate that the immediate application of spray-on topical anaesthesia to mulesing, castration and tail-docking wounds, significantly reduced the pain experienced post-procedure and improved the rate of wound healing. Increasing adoption by producers of pain relief for lambs during surgical routine husbandry procedures offers a new welfare-conscious paradigm for the Australian wool industry. This development has potential application to several species undergoing many livestock procedures throughout the world and offers a simple part solution to address the increasingly important and emerging global issue of welfare conscious agriculture.

Economic management of anthelmintic resistance: model and application*

The increasing prevalence of anthelmintic (drench) resistance in gastrointestinal parasite populations is decreasing the profitability of the Australian sheep industry. Refugia management can delay its development by not exposing a proportion of the worm population to chemical control. A dynamic‐optimisation model is used to assess the economic value of refugia for management of the worm species Teladorsagia circumcincta and macrocyclic lactone drenches in an application to Western Australian sheep flocks. A low rate of refugia (2 per cent) is most profitable under standard circumstances because it slows the development of resistance, but also reduces the proportion of the flock not exposed to chemical control. Frequent drench application should remain the primary method of control. However, its efficacy should be preserved through refugia management, rather than greatly reducing treatment frequency.

Linkage disequilibrium compared between five populations of domestic sheep

BackgroundThe success of genome-wide scans depends on the strength and magnitude of linkage disequilibrium (LD) present within the populations under investigation. High density SNP arrays are currently in development for the sheep genome, however little is known about the behaviour of LD in this livestock species. This study examined the behaviour of LD within five sheep populations using two LD metrics, D' and x2'. Four economically important Australian sheep flocks, three pure breeds (White Faced Suffolk, Poll Dorset, Merino) and a crossbred population (Merino × Border Leicester), along with an inbred Australian Merino museum flock were analysed.ResultsShort range LD (0 – 5 cM) was observed in all five populations, however the persistence with increasing distance and magnitude of LD varied considerably between populations. Average LD (x2') for markers spaced up to 20 cM exceeded the non-syntenic average within the White Faced Suffolk, Poll Dorset and Macarthur Merino. LD decayed faster within the Merino and Merino × Border Leicester, with LD below or consistent with observed background levels. Using marker-marker LD as a guide to the behaviour of marker-QTL LD, estimates of minimum marker spacing were made. For a 95% probability of detecting QTL, a microsatellite marker would be required every 0.1 – 2.5 centimorgans, depending on the population used.ConclusionSheep populations were selected which were inbred (Macarthur Merino), highly heterogeneous (Merino) or intermediate between these two extremes. This facilitated analysis and comparison of LD (x2') between populations. The strength and magnitude of LD was found to differ markedly between breeds and aligned closely with both observed levels of genetic diversity and expectations based on breed history. This confirmed that breed specific information is likely to be important for genome wide selection and during the design of successful genome scans where tens of thousands of markers will be required.

Pilot trials in Australia on eradication of footrot by flock specific vaccination

Footrot is a contagious disease of ruminants requiring strains of Dichelobacter nodosus that possess virulence factors including proteases and fimbriae. Sheep can be immunised against footrot using vaccine-containing fimbriae, either native or recombinant. The fimbriae are responsible for the serological K-agglutination reaction, which has been used to classify field isolates into nine major serogroups. The range of protection conferred by vaccination is largely restricted to the serogroup involved, but antigenic competition precludes effective vaccination with multivalent vaccines that contain all serogroups. However, vaccination with specific bivalent recombinant fimbrial vaccine led to eradication of virulent footrot from small ruminants in Nepal and the same result was obtained in Bhutan using a specific whole cell vaccine. In the study reported here two pilot trials have been conducted in Australian sheep flocks, one with a virulent form of footrot caused by a single serogroup F, and the other with an intermediate form also caused by a single serogroup C. In trial 1 pre-vaccination prevalence of clinical footrot in a group of randomly selected animals was 44%. This reduced to 2% at 3 months and 0.5% at 4 months, and there were no clinical cases at 5 months or at 16 months post-vaccination in the whole flock. Similarly in trial 2 pre-vaccination whole flock prevalence was 8.5%, while it was 2% at 3 months, 0.3% at 6 months and zero at 18 months post-vaccination. Use of flock specific monovalent whole cell vaccines over whole flocks for only one season and culling of the few non-responders has been a successful approach in eradication of the disease from both these flocks. This is the first study to report the successful use of specific vaccine for the intermediate form of footrot.

Estimating the incidence of fly myiases in Australian sheep flocks: development of a weather‐driven regression model

The blowfly, Lucilia cuprina Wiedemann (Diptera: Calliphoridae), is the primary myiasis (strike) fly of sheep in Australia. Most strike occurs in the anal-perineum area (crutch), but strike to the neck, shoulders, back and withers (body) is also important. Regression analysis was used to determine the extent to which the weekly incidence of flystrike can be explained by variations in fly abundance and/or recent changes in weather, pasture conditions or flock management. Strike and flock management data were collected by questionnaire surveys of 30-60 sheep properties in each of three major sheep-producing areas in southeastern Australia, namely, Gunning (southern New South Wales), Inverell (northern New South Wales) and Flinders Island (Bass Strait). After using simulation modelling to remove effects due to shearing, crutching and/or insecticide treatment, pasture growth index was found to be the most important explanatory variable affecting the incidence of all forms of myiasis. Others were average weekly air temperature, the amount and frequency of rainfall, relative humidity, dung quality index and a factor denoting seasonal effects. Together, these variables accounted for 48.4% of the variation in body strike, 56.8% of that in crutch strike and 51.9% of that in other forms of strike. Prediction was improved by the inclusion of additional lagged variables describing previous strike, fly abundance and fly activity. With these additions, the variation explained increased to 60.4% for body strike, 68.0% for crutch strike and 58.3% for other strikes.

Losses of adult sheep due to ovine Johne's disease in 12 infected flocks over a 3‐year period

To measure the biological and financial impact of ovine Johne's disease (OJD) mortalities on 12 infected flocks within the endemic area of southern New South Wales over a 3-year period. An observational study was conducted over a 3-year period from 2002 to 2004 on sheep from 12 OJD-infected flocks from southern NSW. Flocks ranged from between 3,500 and 20,000 sheep. At the start of the study owner estimates of OJD mortality were 5% or greater. Annual mortality rates were estimated from farm records provided by owners. The proportion of OJD mortalities was assessed after histological examination of tissues collected from dead and moribund sheep during 5-day necropsy inspections conducted in autumn, winter, spring and summer in 2002. The financial impact was estimated using a gross margin analysis for each of the three study years and by placing a financial value on the necropsied sheep. On the 12 farms, the average OJD mortality rate was 6.2% (range 2.1% to 17.5%) in 2002, 7.8% (range 1.8% to 14.6%) in 2003 and 6.4% (range 2% to 11.9%) in 2004. The average decrease in gross margin due to OJD infection on a farm in 2002 was 6.4% (range 2.2% to 15.4%), 8.5% (range 3.1% to 15.8%) in 2003 and 7.4% (range 1.5% to 15.4%) in 2004. This equates to an average reduction in annual income of $13,715 per farm per year. OJD losses accounted on average for two thirds of the total estimated financial loss associated with sheep deaths. This study demonstrates the significant biological and financial impact of OJD on sheep flocks. These findings are of relevance to all Australian sheep flocks infected or at risk of OJD infection.

Efficacy of a killed vaccine for the control of paratuberculosis in Australian sheep flocks

A field trial was undertaken from 1999 until 2004 to determine the efficacy of a killed M. a. paratuberculosis vaccine, Gudair™, for the control of ovine Johne's disease (OJD) in merino sheep run under Australian pastoral conditions. On each of three farms experiencing significant OJD losses (5–15% per annum), 200 merino lambs (age 1–4 months) were vaccinated, and 200 lambs were left unvaccinated. Animal assessments and sample collections were conducted twice yearly until 4 or 5 years of age. The impact of vaccination on mortality rate, faecal shedding of M. a. paratuberculosis (by pooled and individual faecal culture), liveweight, wool productivity, vaccine injection site lesions and cellular (BOVIGAM™) and humoral (PARACHEK™) immunity was examined. Vaccination stimulated cell-mediated and humoral immune responses, reduced mortalities due to OJD by 90% and delayed faecal shedding for the first year post-vaccination. Thereafter, the prevalence of shedders among vaccinates was reduced by 90%. The numbers of M. a. paratuberculosis excreted by the vaccinated groups were also reduced by at least 90% at most sampling times. However, high levels of excretion by vaccinates occurred on some occasions, and although only 7 of 600 vaccinates died from OJD, all 7 had multibacillary lesions. Thus there remains a risk that some vaccinated sheep will transfer the disease. Small reductions in liveweight were found in vaccinated lambs in the first year, but there was little effect on wool production. Vaccine injection site lesions were detected in almost 50% of sheep after 2 months, and these persisted for at least 4 years in 20–25% of vaccinates. Data from this trial enabled the registration of Gudair™ in Australia in 2002 and underpins the pivotal role of vaccination in the current management of OJD.

Epidemiology of Yersinia pseudotuberculosis and Y. enterocolitica infections in sheep in Australia.

Infections with Yersinia pseudotuberculosis serotype III and Y. enterocolitica serotype O2,3 were found to be common in Australian sheep flocks. Transmission of Y. pseudotuberculosis occurred in late winter and early spring, while Y. enterocolitica transmission occurred from midwinter to early summer. Excretion of Y. pseudotuberculosis was limited to the winter and spring period and was particularly common in 1- and 2-year-old sheep. Infection persisted for up to 14 weeks. Y. pseudotuberculosis infection did not confer immunity to natural infection with Y. enterocolitica. Y. enterocolitica excretion occurred year-round, with the greatest prevalence being in summer and autumn. Infection persisted for up to 29 weeks. Sheep less than 1 year old were most commonly infected with Y. enterocolitica. Infection with either Y. pseudotuberculosis or Y. enterocolitica was rare in aged sheep. Restriction endonuclease analysis of Y. pseudotuberculosis serotype III from sheep, cattle, deer, and pigs showed that the bacterial isolates were genetically indistinguishable. Similarly, Y. enterocolitica isolates from sheep were indistinguishable from those isolated from goats and cattle.

Survey of anthelmintic resistance in Western Australian sheep flocks. 1. Prevalence.

Between July 1981 and December 1983, 116 randomly selected sheep farms in the south west of Western Australian were surveyed for resistance to anthelmintics. A faecal worm egg count reduction test was carried out on each farm. Anthelmintics tested were thiabendazole (44 mg/kg) and levamisole (7.5 mg/kg) given by intra-ruminal injection and comparisons were made with an untreated group on each farm. Successful tests were carried out on 84 farms and 68% of these had resistant worms present. The prevalence of thiabendazole resistant populations was for H. contortus 18%; Teladorsagia, 41% and Trichostrongylus, 48% and for levamisole resistant populations H. contortus, 10%; Teladorsagia, 41%; Trichostrongylus, 24%, and Nematodirus, 10%. Multiple resistant populations were found on 17% of farms. Although the distribution of nematode genera varied between the 400 to 750 mm and the greater than 750 mm rainfall zones there was no significant difference in the prevalence of resistance between zones. About one third of resistant populations were severely resistant (less than 60% reduction). It is likely that resistant worms were present on many farms without causing clinical disease and continued anthelmintic selection pressure will result in further development of resistance.