Australian Macropodid Research Articles

Phylogenetic Analysis of Mitogenomic Data Sets Resolves the Relationship of Seven Macropostrongyloides Species from Australian Macropodid and Vombatid Marsupials.

Nematodes of the genus Macropostrongyloides inhabit the large intestines or stomachs of macropodid (kangaroos and wallabies) and vombatid (wombats) marsupials. This study established the relationships of seven species of Macropostrongyloides using mitochondrial (mt) protein amino acid sequence data sets. Phylogenetic analyses revealed that species of Macropostrongyloides (M. lasiorhini, M. baylisi, M. yamagutii, M. spearei, M. mawsonae and M. woodi) from the large intestines of their hosts formed a monophyletic assemblage with strong nodal support to the exclusion of M. dissimilis from the stomach of the swamp wallaby. Furthermore, the mitochondrial protein-coding genes provided greater insights into the diversity and phylogeny of the genus Macropostrongyloides; such data sets could potentially be used to elucidate the relationships among other parasitic nematodes of Australian marsupials.

Genetic variation within the genus Macropostrongyloides (Nematoda: Strongyloidea) from Australian macropodid and vombatid marsupials.

The genetic variation and taxonomic status of the four morphologically-defined species of Macropostrongyloides in Australian macropodid and vombatid marsupials were examined using sequence data of the ITS+ region (=first and second internal transcribed spacers, and the 5.8S rRNA gene) of the nuclear ribosomal DNA. The results of the phylogenetic analyses revealed that Ma. baylisi was a species complex consisting of four genetically distinct groups, some of which are host-specific. In addition, Ma. lasiorhini in the common wombat (Vombatus ursinus) did not form a monophyletic clade with Ma. lasiorhini from the southern hairy-nosed wombat (Lasiorhinus latifrons), suggesting the possibility of cryptic (genetically distinct but morphologically similar) species. There was also some genetic divergence between Ma. dissimilis in swamp wallabies (Wallabia bicolor) from different geographical regions. In contrast, there was no genetic divergence among specimens of Ma. yamagutii across its broad geographical range or between host species (i.e. Macropus fuliginosus and M. giganteus). Macropostrongyloides dissimilis represented the sister taxon to Ma. baylisi, Ma. yamagutii and Ma. lasiorhini. Further morphological and molecular studies are required to assess the species complex of Ma. baylisi.

Taxonomy of rock-wallabies, Petrogale (Marsupialia : Macropodidae). V. A description of two new subspecies of the black-footed rock-wallaby (Petrogale lateralis)

The black-footed rock-wallaby (Petrogale lateralis) is the most widespread member of the endemic Australian macropodid genus Petrogale. Considerable morphological and genetic diversity within this species has long been recognised and P. lateralis is currently divided into three described subspecies (P. lateralis lateralis, P. l. pearsoni, P. l. hacketti) and two undescribed forms (MacDonnell Ranges race, West Kimberley race). Chromosomal, morphological, genic and genomic studies have demonstrated that these five taxa are closely related but distinguishable. Here, we formally name the MacDonnell Ranges race and the West Kimberley race as subspecies of P. lateralis. Taxonomic registration: (LSID publication) http://zoobank.org/urn:lsid:zoobank.org:pub:71C3B7CE-CE3D-4A78-83A6-5EB50FBBA810

Molecular and morphological characterisation of Pharyngostrongylus kappa Mawson, 1965 (Nematoda: Strongylida) from Australian macropodid marsupials with the description of a new species, P. patriciae n. sp.

BackgroundPharyngostrongylus kappa Mawson, 1965 is a nematode (Strongyloidea: Cloacininae), endemic to the sacculated forestomachs of Australian macropodid marsupials (kangaroos and wallaroos). A recent study revealed genetic variation within the internal transcribed spacer region of the nuclear ribosomal DNA among P. kappa specimens collected from Macropus giganteus Shaw and Osphranter robustus (Gould). This study aimed to characterise the genetic and morphological diversity within P. kappa from four macropodid host species, including M. giganteus, O. robustus, O. antilopinus (Gould) and O. bernardus (Rothschild).MethodsSpecimens of P. kappa from M. giganteus and Osphranter spp. from various localities across Australia were examined. The first and second internal transcribed spacers (ITS1 and ITS2, respectively) were amplified using polymerase chain reaction and sequenced. Phylogenetic methods were used to determine the interspecific diversification within P. kappa and its evolutionary relationship with other congeners.ResultsMorphological examination revealed that P. kappa from M. giganteus, the type-host, can be distinguished from those in Osphranter spp. by the greater length and number of striations on the buccal capsules. DNA sequences showed that P. kappa from M. giganteus was genetically distinct from that in Osphranter spp., thereby supporting the morphological findings. Based on these finding, a new species from Osphranter spp., Pharyngostrongylus patriciae n. sp., is described.ConclusionPharyngostrongylus patriciae n. sp. from Osphranter spp. is distinguished from P. kappa based on molecular and morphological evidence. The study highlights the importance of combining molecular and morphological techniques for advancing the nematode taxonomy. Although ITS genetic markers have proven to be effective for molecular prospecting as claimed in previous studies, future utilisation of mitochondrial DNA to validate ITS data could further elucidate the extent of speciation among macropodid nematodes.

Phylogenetic relationships of three tribes of cloacinine nematodes (Strongylida: Chabertiidae) from macropodid marsupials.

The phylogenetic relationships of 42 species of cloacinine nematodes belonging to three tribes (Coronostrongylinea, Macropostrongylinea and Zoniolaiminea) were examined based on sequence data of the first and second internal transcribed spacers (ITS-1 and ITS-2) of the nuclear ribosomal DNA. All nematodes examined are parasites of Australian macropodid marsupials. None of the three nematode tribes was monophyletic. Paraphyly was also encountered in three genera: Papillostrongylus, Monilonema and Wallabinema. Species within the genus Thallostonema were limited to a single host genus (i.e. Thylogale), whereas species within the five principal genera (Coronostrongylus, Macropostrongylus, Popovastrongylus, Wallabinema and Zoniolaimus) were found to occur in multiple host genera. Potential modes of evolution among these nematodes are discussed.

Landscape discontinuities influence gene flow and genetic structure in a large, vagile Australian mammal,Macropus fuliginosus

Large vagile mammals typically exhibit little genetic structuring across their range, particularly when their habitat is essentially continuous. We investigated the population genetic structure of a large vagile Australian macropodid, Macropus fuliginosus, which is continuously distributed across most of southern Australia, using nine highly polymorphic nuclear microsatellite loci. Five distinct genetic units were identified across the range, four on the mainland and one on Kangaroo Island. In addition to the predicted historic Nullarbor Plain Barrier, two unexpected mainland barriers to gene flow were identified. Both were associated with landscape discontinuities (Swan River, Flinders Ranges), which appear within the dispersal capabilities of M. fuliginosus. Typical of large vagile mammals, M. fuliginosus displays high genetic diversity (with the exception of an insular population) and weak genetic structuring (within genetic units). However, the expansion of M. fuliginosus from southwestern Australia during the Pleistocene has resulted in significantly reduced genetic diversity in eastern populations. No significant sex-biased dispersal was detected, although differences in habitat, densities and climatic conditions between the eastern and western regions of the range appear to influence dispersal with the effects of isolation by distance only evident in the west. These results suggest that the biogeography of southern Australia is more complex than previously thought and reveal that seemingly minor landscape features can significantly impact genetic structuring in large vagile mammals.

Australia’s Savanna Herbivores: Bioclimatic Distributions and an Assessment of the Potential Impact of Regional Climate Change

The future impacts of climate change are predicted to significantly affect the survival of many species. Recent studies indicate that even species that are relatively mobile and/or have large geographic ranges may be at risk of range contractions or extinction. An ecologically and evolutionary significant group of mammals that has been largely overlooked in this research is Australia's large marsupial herbivores, the macropodids (kangaroos). The aims of our investigation were to define and compare the climatic conditions that influence the current distributions of four sympatric large macropodids in northern Australia (Macropus antilopinus, Macropus robustus, Macropus giganteus, and Macropus rufus) and to predict the potential future impact of climate change on these species. Our results suggest that contemporary distributions of these large macropodids are associated with well-defined climatic gradients (tropical and temperate conditions) and that climatic seasonality is also important. Bioclimatic modeling predicted an average reduction in northern Australian macropodid distributions of 48% +/- 16.4% in response to increases of 2.0 degrees C. At this temperature, the distribution of M. antilopinus was reduced by 89% +/-0.4%. We predict that increases of 6.0 degrees C may cause severe range reductions for all four macropodids (96% +/-2.1%) in northern Australia, and this range reduction may result in the extinction of M. antilopinus.

Training Tammar Wallabies (Macropus eugenii) to Respond to Predators: A Review Linking Experimental Psychology to Conservation

Animals bred in captivity often suffer high levels of predation after release into the wild. Prerelease predator avoidance training has been undertaken to try to improve antipredator skills. Applied research on predator avoidance learning in birds and mammals has not benefited from the empirical findings of extensive basic research, as it has been the case for fish. Consequently, this field has progressed slowly and the utility of prerelease antipredator training as a conservation strategy remains controversial. Here, I report one experiment and review two others that illustrate the way in which principles and experimental designs borrowed from classic studies of animal learning can be used to develop predator avoidance training techniques and to establish the content of learning. Results show that tammar wallabies (Macropus eugenii), an Australian macropodid marsupial, can acquire a fear response that is specific to predators, but that the likelihood of learning is dependent upon subtle details of the training protocol. Differential reinforcement of predator and non-predator stimuli has the potential to enhance the specificity of learning, if necessary. I discuss the implications of these results for the field of predator avoidance training and suggest that a controlled experimental approach, which enables the content of learning to be described, will be the most fruitful for this research area in the long term.

Mutation scanning analysis of sequence heterogeneity in the second internal transcribed spacer (rDNA) within some members of theHypodontus macropi (Nematoda: Strongyloidea) complex

Single-strand conformation polymorphism analysis was employed to investigate sequence variation in the second internal transcribed spacer (ITS-2) of nuclear ribosomal DNA within and among individuals representing three operational taxonomic units (OTUs) of Hypodontus macropi from different species of Australian macropodid marsupials. Of the 96 nematodes analysed, totals of 3 (OTU1 from Petrogale persephone), 10 (OTU2 from Macropus robustus) and 7 (OTU9 from Macropus rufus) representative individuals were selected for DNA sequencing to characterise and estimate the magnitude of nucleotide variation in the ITS-2. While no unequivocal nucleotide difference in the ITS-2 was detectable within OTU1, most sequence variation (3/44.7%) detected within OTU2 and OTU9 was related chiefly to dinucleotide (CA, TA, or a combination of both) differences. This microsatellite variability in some H. macropi OTUs suggests that the ITS-2 rDNA may be subjected to slippage events during DNA replication, resulting in short dinucleotide repeat tracts being dispersed throughout the ITS-2 lineages, or possibly transposition and/or crossing-over events. Nucleotide variation in the ITS-2 of individual OTUs was related to the proposed secondary structure for the precursor ribosomal RNAs. Most of the sequence heterogeneity or polymorphism within OTU2 and OTU9 occurred in loops or bulges of the predicted secondary structure, which appear not to be under functional constraint. The findings of this study have implications for investigating speciation events and population differentiation in nematodes at the molecular level.

Novel isotrichid ciliates endosymbiotic in Australian macropodid marsupials.

Samples of foregut content were collected from 86 macropodid marsupials and examined for the presence of endosymbiotic ciliates. Four host species were examined: Macropus giganteus (eastern grey kangaroo), M. fuliginosus (western grey kangaroo), M. robustus (common wallaroo) and Thylogale billardierii (Tasmanian pademelon). Ciliate morphology was determined by microscopical examination of live and silver-impregnated specimens. Isotrichid ciliates were detected in 51 (59%) of the 86 animals examined. Five new species and one new genus are described. Three of the species belong to the genus Dasytricha Schuberg, 1888; D. dehorityi n. sp. from M. giganteus, D. dogieli n. sp. from M. robustus and D. mundayi n. sp. from T. billardierii. Bitricha n. g. is characterised by the possession of two fields of somatic ciliation, a transverse ventral and a longitudinal dorsal field. B. oblata n. sp. is described from M. giganteus and M. fuliginosus and B. tasmaniensis n. sp. is described from T. billardierii. The occurrence of isotrichid ciliates in both metatherian and eutherian mammals suggests that the family either evolved prior to the divergence of the mammalian lineages or switched hosts from one group to the other following host diversification.

An electrophoretic and morphological analysis of Labiostrongylus (Labiomultiplex) uncinatus (Nematoda: Cloacinidae), with the description of a new species, L. contiguus, from Macropus parryi (Marsupialia: Macropodidae)

An electrophoretic study was conducted on Labiostrongylus (Labiomultiplex) uncinatus, nematodes that occur in the stomachs of two species of Australian macropodid, Macropus dorsalis and M. parryi. The allelic profiles of these nematodes were compared to those of a morphologically distinct species, L. (Lm.) billardierii, which infests Thylogale billardierii. Nematodes were genetically characterized at 17 enzymes encoding a presumptive 18 loci. The results revealed the existence of two species, one in M. dorsalis and the other in M. parryi, that had fixed genetic differences at 72% of loci. This level of fixed difference between these species is equivalent to that when each is compared to L. billardierii (87–89%). The new species in M. parryi, Labiostrongylus contiguus n. sp., is described herein. A morphological comparison with L. uncinatus revealed slight but consistent differences in the morphology of their anterior end; namely, rectangular rather than conical shaped lateral lips, small inconspicuous, not larger hook-shaped cephalic papillae, and convex rather than flat floor of the buccal capsule for L. (Lm.) contiguus as compared with L. (Lm.) uncinatus. Differentiation of L. contiguus from L. uncinatus is more clearly demonstrated by biochemical characters than morphological ones.

Differences in a ribosomal DNA sequence of morphologically indistinguishable species within the Hypodontus macropi complex (Nematoda: Strongyloidea)

The nucleotide sequence of the second internal transcribed spacer (ITS-2) from ribosomal DNA has been determined for 3 members of the Hypodontus macropi species complex. Sequences were compared from nematodes collected from 3 species of Australian macropodid marsupial, Petrogale persephone, Macropus robustus robustus and Thylogale billardierii. The ITS-2 of each operational taxonomic unit ranged from 287 to 292 bases in length, and had a GC content of 36.6–40.1%. Differences in nucleotide sequence between nematodes from the different host species ranged from 25.0% to 28.3%. The data suggest that H. macropi from P. persephone represents a different species to those in M. r. robustus and T. billardierii. The unique feature of this study is that it represents a comparison of the ribosomal DNA sequences of nematode species which are morphologically indintinguinhable but which have been demonstrated to be genetically distinct (i.e. cryptic) species based on electrophoretic data. The results also demonstrate further that morphological characters alone are often not adequate for species recognition. Differences between these 3 species of H. macropi in their recognition sites for restriction endonucleases, indicates that a PCR-RFLP approach could be used, in conjunction with allozyme electrophoresis, to establish how many species are present within the H. macropi complex.