Atypical Substrates Research Articles

Fouling assemblages on offshore wind power plants and adjacent substrata

A significant expansion of offshore wind power is expected in the near future, with thousands of turbines in coastal waters, and various aspects of how this may influence the coastal ecology including disturbance effects from noise, shadows, electromagnetic fields, and changed hydrological conditions are accordingly of concern. Further, wind power plants constitute habitats for a number of organisms, and may locally alter assemblage composition and biomass of invertebrates, algae and fish. In this study, fouling assemblages on offshore wind turbines were compared to adjacent hard substrate. Influences of the structures on the seabed were also investigated. The turbines differed significantly from adjacent boulders in terms of assemblage composition of epibiota and motile invertebrates. Species number and Shannon–Wiener diversity were, also, significantly lower on the wind power plants. It was also indicated that the turbines might have affected assemblages of invertebrates and algae on adjacent boulders. Off shore wind power plant offer atypical substrates for fouling assemblages in terms of orientation, depth range, structure, and surface texture. Some potential ecological implications of the addition of these non-natural habitats for coastal ecology are discussed.

Atypical neural substrates of Embedded Figures Task performance in children with Autism Spectrum Disorder

Superior performance on the Embedded Figures Task (EFT) has been attributed to weak central coherence in perceptual processing in Autism Spectrum Disorder (ASD). The present study used functional magnetic resonance imaging to examine the neural basis of EFT performance in 7- to 12-year-old ASD children and age- and IQ-matched controls. ASD children activated only a subset of the distributed network of regions activated in controls. In frontal cortex, control children activated left dorsolateral, medial and dorsal premotor regions whereas ASD children only activated the dorsal premotor region. In parietal and occipital cortices, activation was bilateral in control children but unilateral (left superior parietal and right occipital) in ASD children. Further, extensive bilateral ventral temporal activation was observed in control, but not ASD children. ASD children performed the EFT at the same level as controls but with reduced cortical involvement, suggesting that disembedded visual processing is accomplished parsimoniously by ASD relative to typically developing brains.

Residues Glutamate 216 and Aspartate 301 Are Key Determinants of Substrate Specificity and Product Regioselectivity in Cytochrome P450 2D6

Cytochrome P450 2D6 (CYP2D6) metabolizes a wide range of therapeutic drugs. CYP2D6 substrates typically contain a basic nitrogen atom, and the active-site residue Asp-301 has been implicated in substrate recognition through electrostatic interactions. Our recent computational models point to a predominantly structural role for Asp-301 in loop positioning (Kirton, S. B., Kemp, C. A., Tomkinson, N. P., St.-Gallay, S., and Sutcliffe, M. J. (2002) Proteins 49, 216-231) and suggest a second acidic residue, Glu-216, as a key determinant in the binding of basic substrates. We have evaluated the role of Glu-216 in substrate recognition, along with Asp-301, by site-directed mutagenesis. Reversal of the Glu-216 charge to Lys or substitution with neutral residues (Gln, Phe, or Leu) greatly decreased the affinity (K(m) values increased 10-100-fold) for the classical basic nitrogen-containing substrates bufuralol and dextromethorphan. Altered binding was also manifested in significant differences in regiospecificity with respect to dextromethorphan, producing enzymes with no preference for N-demethylation versus O-demethylation (E216K and E216F). Neutralization of Asp-301 to Gln and Asn had similarly profound effects on substrate binding and regioselectivity. Intriguingly, removal of the negative charge from either 216 or 301 produced enzymes (E216A, E216K, and D301Q) with elevated levels (50-75-fold) of catalytic activity toward diclofenac, a carboxylate-containing CYP2C9 substrate that lacks a basic nitrogen atom. Activity was increased still further (>1000-fold) upon neutralization of both residues (E216Q/D301Q). The kinetic parameters for diclofenac (K(m) 108 microm, k(cat) 5 min(-1)) along with nifedipine (K(m) 28 microm, k(cat) 2 min(-1)) and tolbutamide (K(m) 315 microm, k(cat) 1 min(-1)), which are not normally substrates for CYP2D6, were within an order of magnitude of those observed with CYP3A4 or CYP2C9. Neutralizing both Glu-216 and Asp-301 thus effectively alters substrate recognition illustrating the central role of the negative charges provided by both residues in defining the specificity of CYP2D6 toward substrates containing a basic nitrogen.

α-Benzoyloxy- and α-Methoxy-Substituted Glycine Derivatives as Atypical Substrates for Free-Radical Reactions With Stannanes

α-Benzoyloxy- and α-methoxy-substituted glycine derivatives undergo homolytic reactions with tributyltin hydride to give the reduction product. With allyltributyltin they afford the product of allyl group transfer and the corresponding dimeric glycine derivative, while their reactions with hexabutylditin and di-tert-butyl disulfide afford the dimer and the α-tert-butylthio-substituted glycine derivative. The free-radical nature of these reactions is most clearly demonstrated in the formation of the glycine dimer.

α-Benzoyloxy- and α-Methoxy-Substituted Glycine Derivatives as Atypical Substrates for Free-Radical Reactions With Stannanes

α-Benzoyloxy- and α-methoxy-substituted glycine derivatives undergo homolytic reactions with tributyltin hydride to give the reduction product. With allyltributyltin they afford the product of allyl group transfer and the corresponding dimeric glycine derivative, while their reactions with hexabutylditin and di-tert-butyl disulfide afford the dimer and the α-tert-butylthio-substituted glycine derivative. The free-radical nature of these reactions is most clearly demonstrated in the formation of the glycine dimer.

Characterization of a divergent glycosomal microbody phosphoglycerate kinase from Trypanosoma brucei

There are 3 loci in the phosphoglycerate kinase (PGK) gene complex of Trypanosoma brucei. The PGK-A gene product, which we term 56PGK, is targeted to glycosomal microbodies and is highly homologous to the parasite's 2 known PGKs (one cytoplasmic and one glycosomal). However, 56PGK contains an 80 amino acid insertion as well as numerous substitutions compared to the other PGKs. The complementation and kinetic analyses described here demonstrate that 56PGK is an authentic phosphoglycerate kinase - the largest yet described. When expressed in Escherichia coli, 56PGK complements the pgk − phenotype. 56PGK was expressed as a fusion protein and purified to near homogeneity. The Michaelis constants are similar to those of other PGKs, being 0.12 and 2.4 mM for Mg-ATP and 3-phosphoglycerate, respectively. As with other T. brucei PGKs, ATP but not GTP or ITP can serve as a phosphate donor during catalysis. No evidence was obtained for phosphate transfer to atypical substrates. 56PGK shows sulfate inhibition at all concentrations tested, rather than the sulfate activation observed with yeast PGK.

Proteins of the kidney microvillar membrane. Aspartate aminopeptidase: purification by immunoadsorbent chromatography and properties of the detergent- and proteinase-solubilized forms.

Aminopeptidase A (aspartate aminopeptidase, EC 3.4.11.7) was purified 2000-fold from pig kidney cortex. The essential step in the purification was chromatography on an immunoadsorbent column prepared from a rabbit antiserum raised against pig intestinal aminopeptidase A. Glutamyl and aspartyl substrate were attacked most rapidly and their hydrolyses were stimulated by Ca2+. The 2-naphthylamide derivatives of neutral and basic amino acids were also hydrolysed by aminopeptidase A, but at rates about two orders of magnitude lower, and Ca2+ was inhibitory. The possibility that these atypical substrates were hydrolysed by traces of aminopeptidase M (EC 3.4.11.2) contaminating the preparation could be excluded on several grounds. Aminopeptidase A was sensitive to inhibition by chelating agents and the inactive enzyme could be reactivated by Ca2+ or Mn2+. Atomic absorption spectrophotometry revealed 1 g-atom of Ca/143000 g of protein. Two forms of the enzyme were purified: an amphipathic form solubilized from the membrane by Triton X-100 (detergent form) and a hydrophilic form released by incubation with trypsin (proteinase form). The detergent form exhibited charge-shift in crossed immunoelectrophoresis when anionic or cationic detergents were present. On gel filtration, mol.wts. of 350000--400000 and 270000 were calculated for the detergent and proteinase forms. Electron microscopy after negative staining of the proteinase form revealed a dimeric structure. Electrophoresis of either form in the presence of sodium dodecyl sulphate revealed four polypeptides with mobilities corresponding to apparent mol.wts. of 155000, 110000, 90000 and 45000. All four bands stained positively for carbohydrate. Pig serum possesses weak aminopeptidase A activity; immunological experiments showed it to be a similar protein.

Sex pheromone scent marking by females ofPectinophora gossypiella (Lepidoptera: Gelechiidae)

Females of the pink bollworm moth,Pectinophora gossypiella (Saunders), scent marked the substrate to which they were clinging with the extended pheromone gland during nocturnal pheromonereleasing periods. Scent marks were deposited on both natural (cotton leaf) and atypical (glass) substrates. In both situations, the scent marks elicited attraction responses from conspecific males.

Discrimination, previous experience and substrate selection by the amphipod Corophium.

ABSTRACT Populations contain no animals that are consistently less discriminating than others in their choice of substrates. Previous experience in atypical substrates does not alter preferences for typical substrates. Animals live slightly longer in very fine-grained substrates than in coarser ones. Their growth rates do not differ over a range of particle sizes. Animals select the smaller grains in a substrate to build their tubes with.