Abstract The WHO Classification of Brain Tumors 5th edition requires the evaluation of TERT promoter mutations and CDKN2A/B homozygous deletions for the diagnosis of malignant meningiomas. Digital PCR (dPCR) is an emerging method for highly sensitive quantitative analysis. In this study, we performed TERT promoter mutation analysis using Pyrosequencing and dPCR in specimens with atypical and anaplastic meningiomas to investigate its utility and clinical significance. Adult patients diagnosed with atypical or anaplastic meningiomas after tumor resection between January 2009 and June 2023 were included. Genomic DNA was extracted from the excised specimens. TERT promoter mutations was analyzed by using the Pyrosequence and dPCR methods and compared with the clinical course. A total of 37 meningioma cases (13 males and 24 females) with 64 specimens were included. Atypical meningioma, grade II (WHO 2016) at diagnosis was 53 specimens (83%) and anaplastic meningioma, grade III (WHO 2016) was 11 specimens (17%). Of these, 7 (10%) were diagnosed with TERT promoter mutations by pyrosequencing, and one case with a low frequency (15%) of mutations by dPCR that tested negative by pyrosequencing had repeated recurrences in a short period of time. The dPCR method is highly sensitive in detecting low frequency TERT promoter mutations in tumor cell subpopulations and may contribute to the determination of treatment by predicting the malignant course of the disease. The results suggest that dPCR could contribute to therapeutic decision-making by detecting low-frequency TERT promoter mutations in tumor cell subpopulations.
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