This study explores the gasochromic hydrogen sensing capabilities of Pd-coated NaxWO3 thin films prepared via Flame Vapor Deposition (FVD) on soda-lime glass substrates. Employing an oxy-hydrogen generator and varying substrate temperatures (100–450 °C) were investigated. X-ray diffraction (XRD) and field emission scanning electron microscopy (FESEM) revealed a transition from Na0.1WO3 to Na2W6O19 phases, increased crystallite size (5.4–35.5 nm), and morphological changes from porous to dense structures with temperature. The films exhibited good optical transparency (70–95%) in the visible and near-infrared, with the sample deposited at 350 °C (S350) showing the maximum transmittance. The gasochromic hydrogen sensing performance of Pd/NaxWO3 films was evaluated. The sensor response increased with operating temperature, reaching an optimal performance at 300 °C. The sample S350 exhibited the fastest response (51 s) and recovery (30 s) times with a linear calibration curve limit of detection (LOD) of 46 ppm. Repeated cycling tests indicated stable and reversible performance. Finally, the sensing mechanism was described.