Ombrogenic Atlantic salt marshes are defined as areas of halophytic, terrestrial vegetation which are periodically flooded by the tide and have a predominant underlying organic substrate comprising of wood and/or Sphagnum peat that formed under freshwater conditions. The objective of this study was to determine to what extent salt marsh plant ecology and, specifically, vegetation composition and zonation relate to this underlying substrate of organic matter (peat). A vegetation survey was carried out on nine salt marshes, three on peat substrate and two on sand, mud and sand/mud, respectively. In parallel, key edaphic variables were measured including pH, conductivity, organic content, moisture content and nutrients: ammonium, nitrate and phosphorus. Salt marshes on peat substrate are distinct. Ammonium content was twice the maximum reported in other salt marsh studies, while the vegetation composition of salt marshes on peat substrate was significantly different from that of other salt marshes. Salt marshes on peat substrate were found to be higher in species diversity and richness and characterised by a predominantly forb and rush community. However, some common salt marsh species, such as Atriplex portulacoides and Spartina anglica were absent from salt marshes on peat. Ordination analysis revealed that zonation was primarily associated with conductivity on peat substrates. In contrast, moisture plays a greater role in zonation within non-peat salt marshes. The findings confirm that the high organic matter content of ombrogenic Atlantic salt marshes is associated with distinct vegetation composition.