Hydrogeochemical and multivariate assessment of groundwater samples of the Churachandpur sub-division of the state of Manipur was carried out to study its suitability for potable and irrigational uses. The study extensively discusses the underlying hydro-geochemistry using multivariate geostatistical tools for physicochemical parameters of 35 spatially distributed groundwater samples during pre- and post-monsoon seasons. In situ parameters (pH, TDS, DO, EC, salinity, ORP) were assessed in field conditions, and it was found that few samples exceed concentration than the prescribed standards. Both positive and negative ORP values and low DO levels of the samples indicate oxidizing and reducing aquifers due to recent unstable geologic formations. Although the concentration of Cl−, SO42−, and NO3− is well within desirable levels, the concentration of F− and As3+ of a few samples exceeds the prescribed standard. The water quality index of the groundwater samples signifies that more than 50% of samples are unsuitable for potable uses for both seasons. The geochemical analysis indicates that most of the water is Ca–Mg–Cl–HCO3 type followed by Mg–Ca–Cl–HCO3 types in both the seasons and dominated by the rock-weathering geochemical process. Multivariate analysis and geostatistical mapping highlight the spatial variability of water quality parameters and possibilities of the occurrence of geogenic contaminants in the aquifers of the study area.