Assessment Of Detection Methods Research Articles

Eastward Expansion of Round Goby in New York: Assessment of Detection Methods and Current Range

AbstractThe Round Goby Neogobius melanostomus has spread rapidly around the Great Lakes region since its introduction to North America in 1990. In 2014, a specimen was captured in the New York State Canal System west of Utica, prompting concerns that Round Goby would soon reach the ecologically and economically valuable watersheds of Lake Champlain and the Hudson River estuary. The establishment of Round Goby populations elsewhere has been linked to a number of negative ecological consequences, yet methods for monitoring the invasion front of this species remain limited. The objectives of this study were to assess the current distribution of Round Goby in central New York and to determine the most effective methods for monitoring the invasion front. This was achieved by concurrently using benthic trawling, seining, minnow traps, and environmental DNA (eDNA) twice annually from 2016 to 2019 at 12 sites on the canal system between Oneida Lake and the Hudson River. Of the three traditional gear types, benthic trawling was the most effective method and captured Round Goby as far east as Utica by 2019. This finding suggests only minimal eastward expansion of Round Goby occurred between 2014 and 2019. Round Goby DNA was detected in water samples during all surveys in which individuals were captured with trawling, and the estimated concentration of DNA explained 69% of the variability in trawl catch. At multiple study sites, Round Goby DNA was identified during consecutive surveys before Round Goby were first captured with trawling. This suggests that in lotic waters, eDNA has the potential to forecast or serve as a sentinel for the expansion of Round Goby to new locations. Our results demonstrate the importance of using eDNA in a repeated sampling framework and supplementing eDNA sampling with some level of effort with traditional sampling methods.

Assessment of Detection Methods and Vegetation Associations for Introduced Finlayson's Squirrels (Callosciurus finlaysonii) in Italy.

Managing biological invasions requires rapid, cost-effective assessments of introduced species' occurrence, and a good understanding of the species' vegetation associations. This is particularly true for species that are elusive or may spread rapidly. Finlayson's squirrel (Callosciurus finlaysonii) is native to Thailand and southeastern Asia, and two introduced populations occur in peninsular Italy. One of the two introduced populations is rapidly expanding, but neither effective monitoring protocols nor reliable information on vegetation associations are available. To fill this gap, we conducted visual surveys and hair tube sampling in a periurban landscape of southern Italy to compare the effectiveness of these two methods in assessing presence of Finlayson's squirrel. We also determined the species' association with vegetation types at detection locations and nesting sites. Both visual and hair tube sampling effectively assessed the species' presence, but hair tubes resulted in fewer false absences. Moreover, when we controlled for the costs of labor and equipment, hair tubes were 33.1% less expensive than visual sampling. Presence of squirrels and their nests was positively correlated with shrub species richness, indicating that the occurrence of forests with well-developed understory may inhibit the spread of the species.

Assessment of methods for detection of Helicobacter pylori in animal models

Assessment of methods for detection of <i>Helicobacter pylori</i> in animal models

Nasopharyngeal Carriage of Streptococcus pneumoniae in the elderly: a comparative assessment of detection methods

Nasopharyngeal Carriage of Streptococcus pneumoniae in the elderly: a comparative assessment of detection methods

Extended period of asymptomatic prion disease after low dose inoculation: Assessment of detection methods and implications for infection control

We used quantal dose-titration of a mouse-adapted human transmissible spongiform encephalopathy strain (M470) to compare different analytical methods for their ability to detect asymptomatic brain prion infection after low dose inoculation. At a time point approximately 2.5-fold beyond the mean incubation period of high dose inocula, asymptomatic brain infection was commonly observed using histologic examination, Western blot, and "blind" bioassay following intracerebral inoculation with low titer inocula. At this time point, when a clinical end-point titration would usually be determined, evidence of infection was seen in all healthy animals inoculated with up to 100-fold lower inoculation doses than the lowest causing consistent clinical disease. For the assessment of the presence of asymptomatic infection, we compared different Western immunoblot and histopathological methods in relation to "blind" bioassay using transgenic Tga/20 mice overexpressing mouse prion protein (PrP). Sodium phosphotungstic acid (NaPTA) precipitation of protease-resistant PrP isoforms (PrP(res)) prior to Western blotting was found to approach the sensitivity of the Tga/20 bioassay and was superior to conventional Western blot and histopathological methods, wherein infectivity was commonly found when both of the latter were negative. Re-scaling the original titer by incorporating "blind" transmission data from surviving asymptomatic mice revises the estimate two orders of magnitude higher than the value derived using the conventional clinical disease outcome approach. We also found that the sensitivity of the NaPTA Western blot technique, if used with a diluent such as PBS compared with 10% normal brain homogenate, is adversely affected by up to around 20-fold. We postulate that infectious titer estimates based on more sensitive detection systems such as we report provide a more accurate indication of ultimate transmission risk.

Assessment of methods for detection of infectious Cryptosporidium oocysts and Giardia cysts in reclaimed effluents.

This study evaluates the occurrence of Cryptosporidium oocysts and Giardia cysts in reclaimed effluents if method 1623 with the Envirochek capsule filters (standard and high-volume [HV] filters) and a modified version of the Information Collection Rule method (ICR) with the polypropylene yarn-wound cartridge filter are used. The recovery efficiency of the analytical methods was evaluated with samples of reagent, tap, and reclaimed water by using flow cytometer-sorted spike suspensions. (Oo)cyst recovery efficiency determined filter performance and method reproducibility in the water matrix tested. Method 1623 with the Envirochek HV capsule filter generated significantly higher recovery rates than did the standard Envirochek filter and the modified ICR method. Notwithstanding, large variations in recovery rates (>80%) occurred with samples of reclaimed water, and none of the water quality parameters analyzed in the reclaimed effluents could explain such variability. The highest concentrations of indigenous oocysts were detected by method 1623 with the HV filter, which provided a sufficient number of oocysts for further confirmation of infectious potential. Confirmation of species and potential infectivity for all positive protozoan samples was made by using a nested PCR restriction fragment polymorphism assay and the focus detection method most-probable-number assay, respectively. The methodology and results described in the present investigation provide useful information for the establishment of pathogen numeric standards for reclaimed effluents used for unrestricted irrigation.

Assessment of detection methods in trace analysis by means of a statistically based in-house validation concept

A matrix-considering in-house validation concept for analytical methods is presented which takes into account the uncertainty due to matrix- and time-induced deviations. It is based on a variance component model for univariate quantitative measurement data that can be adapted to both screening and confirmation methods and to both zero-tolerance and threshold decisions. The model allows the calculation of critical concentrations for given α-errors and the calculation of the corresponding power function to evaluate the performance of an analytical method. The model is applied to a real-life validation experiment.

Assessment of laboratory methods for detection of unsuspected diabetes in primary health care.

In order to assess different methods for early detection of unsuspected diabetes, urine and venous blood samples were collected at random from 1082 patients visiting a primary health care centre in southern Sweden. Blood glucose was analysed by the hexokinase method along with the Dextrostix-Eyetone reflectance meter. Urine glucose was determined by Clinistix, Diastix, Neostix, Rediatest, Clinitest and quantitatively by the hexokinase method. Patients fulfilling the criteria of a positive screen were subjected to a diagnostic investigation with an oral glucose tolerance test. Out of 89 positive screenees, 37 patients were classified as diabetics, showing a prevalence of diabetes in the study population of 3.4% according to the WHO criteria. Impaired glucose tolerance was found in 14 patients. In a control group of 56 patients, randomly selected among negative screenees, no cases of diabetes were found. Random blood glucose measurement by the hexokinase method, using 7 mmol/l as a screening level, had a significantly higher sensitivity (95%) than all urine glucose methods (59-30%) with comparable specificity (97-99%). Use of the Dextrostix-Eyetone reflectance meter resulted in a decrease in sensitivity to 75% without any change in specificity or predictability, compared with the hexokinase method. Urine testing for glucose was found to be a suboptimal method for early case finding of diabetes among patients receiving primary health care.