Soil Bacterial Community Assembly Research Articles

Depth-dependent effects of forest diversification on soil functionality and microbial community characteristics in subtropical forests

Soil microbes are critical to the maintenance of forest ecosystem function and stability. Forest diversification, such as monocultures versus mixed forests stands, can strongly influence microbial community patterns and processes, as well as their role in soil ecosystem multifunctionality, such as in subtropical forest ecosystems. However, less is known about these patterns and processes vary with soil depth. Here, we investigated the results of an eight-year forest diversification field experiment comparing the soil ecosystem multifunctionality, bacterial and fungal community assembly, and network patterns in mixed versus monoculture plantations along vertical profiles (0–80 cm depth) in a subtropical region. We found that the introduction of broadleaf trees in coniferous monocultures led to enhanced synergies between multiple functions, thus improving soil multifunctionality. The effects of mixed plantations on the functional potential in top soils were greater than in deep soils, especially for carbon degradation genes (apu, xylA, cex, and glx). Microbial community assembly in the top layer, particularly in mixed plantations, was dominated by stochastic processes, whereas deterministic were more important in the deep layer. Soil microbial network complexity and stability were higher in the top layer of mixed plantations, but in the deep layer was monoculture. Interestingly, the changes in microbial communities and multifunctionality in the top layer were mainly related to variation in nutrients, whereas those in the deep were more influenced by soil moisture. Overall, we reveal positive effects of mixed forest stands on soil microbial characteristics and functionality compared to that of monocultures. Our findings highlighted the importance of enhancing functional diversity through the promotion of tree species diversity, and managers can better develop forest management strategies to promote soil health under global change scenarios.

Deciphering soil environmental regulation on reassembly of the soil bacterial community during wetland restoration

Soil bacteria are vital to regulate biogeochemical processes in wetlands, however, little is known about the patterns and mechanisms of soil bacterial re-organization during wetland restoration. Here, we used a space-for-time substitution approach and examined the ecological processes that drive soil bacterial assembly from cultivated to restored to natural wetlands. Results showed a decrease of soil bacterial α diversity and increase of bacterial community similarity and bacterial interaction (cooperation vs. competition) with years of restoration, which was dominantly influenced by deterministic processes. Identified bacterial keystone taxa (e.g. Variibacter, Acidibacter) with nutrient metabolism capacity exerted strong positive effect on bacterial interaction. Furthermore, changes of soil water condition and nutrient status showed dominantly direct positive effects on soil bacterial reassembly, while falling soil pH significantly promoted bacterial reassembly by increasing keystone taxa and bacterial interaction during wetland restoration. Overall, findings highlighted the crucial role of environmental filtering and its pathway in influencing keystone bacterial taxa that promotes the reassembly of bacterial community during wetland restoration. Our work thus provides a new crucial and timely insight for improving the management of soil bacterial community assembly within the plethora of current and future wetland restoration projects.

Differential spatial responses and assembly mechanisms of soil microbial communities across region-scale Taiga ecosystems

Different soil microbial communities play distinct key roles in regulating forest ecosystem processes and functions. However, the differences in spatial variability and assembly mechanisms of various taiga forest soil microbial taxa remain poorly understood. Here, we assessed the spatial patterns of bacterial and fungal communities, their assembly processes, and the influencing factors in taiga forest ecosystems in Xinjiang, China. A significant distance decay pattern was observed in the similarity of bacterial and fungal communities, with bacterial communities exhibiting a more pronounced pattern than fungal communities. Stochastic and deterministic processes governed together to drive soil bacterial community assembly, whereas stochastic processes dominated fungal community assembly. The coexistence networks revealed that the interactions of bacterial and fungal networks in the four regions are primarily based on interspecies symbiosis, with fungal coexistence networks demonstrating greater stability than bacterial networks. Additionally, the study identified a positive relationship between the modularity of bacterial networks and dispersal limitation. Analysis of environmental factors revealed that soil pH primarily affects the characteristics and assembly mechanisms of bacterial communities, while vegetation conditions primarily affect fungal diversity and composition, with other unconsidered environmental variables influencing the fungal community assembly process. This study emphasized the distinct ways in which bacteria and fungi respond to environmental factors and interspecies interactions. Our results suggested that distinct restoration measures should be implemented for bacteria and fungi in future conservation efforts for forest soil microorganisms.

Unraveling the distribution pattern and driving forces of soil microorganisms under geographic barriers.

The Altai Mountains (ALE) and the Greater Khingan Mountains (GKM) in northern China are forest regions dominated by coniferous trees. These geographically isolated regions provide an ideal setting for studying microbial biogeographic patterns. In this study, we employed high-throughput techniques to obtain DNA sequences of soil myxomycetes, bacteria, and fungi and explored the mechanisms underlying the assembly of both local and cross-regional microbial communities in relation to environmental factors. Our investigation revealed that the environmental heterogeneity in ALE and GKM significantly affected the succession and assembly of soil bacterial communities at cross-regional scales. Specifically, the optimal environmental factors affecting bacterial Bray-Curtis similarity were elevation and temperature seasonality. The spatial factors and climate change impact on bacterial communities under the geographical barriers surpassed that of local soil microenvironments. The assembly pattern of bacterial communities transitions from local drift to cross-regional heterogeneous selection. Environmental factors had a relatively weak influence on myxomycetes and fungi. Both soil myxomycetes and fungi faced considerable dispersal limitation at local and cross-regional scales, ultimately leading to weak geographical distribution patterns.IMPORTANCEThe impact of environmental selection and dispersal on the soil microbial spatial distribution is a key concern in microbial biogeography, particularly in large-scale geographical patterns. However, our current understanding remains limited. Our study found that soil bacteria displayed a distinct cross-regional geographical distribution pattern, primarily influenced by environmental selection. Conversely, the cross-regional geographical distribution patterns of soil myxomycetes and fungi were relatively weak. Their composition exhibited a weak association with the environment at local and cross-regional scales, with assembly primarily driven by dispersal limitation.

PH Nonlinearly Dominates Soil Bacterial Community Assembly along an Altitudinal Gradient in Oak-Dominant Forests.

Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020-1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5-6.5, and an SOC of 25-50 g kg-1, and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg-1, and available phosphorus > 3.0 g kg-1. These findings imply that environmental filtering processes nonlinearly shape bacterial communities.

Spatial heterogeneity of resource availability drives soil bacterial community assembly along the sandy coast of Southern China

Resources scarcity is prevalent in natural microbial communities, affecting both biodiversity and coexistence. However, its intricate impacts on community assembly remain incompletely understood. In this study, we examined the bacterial community assembly processes in low-resource soil patches along the sandy coast of Southern China, focused on the relative importance of abiotic and biotic factors. Our study revealed a slightly decreasing trend in bacterial community similarity with increasing geographic distance, whereas the spatial heterogeneity of soil resource availabilities, including total nitrogen (TN), ammonium (NH4+-N), and total phosphorus (TP), explained 75 % of the total variation in the soil bacterial community. Nitrogen was identified as the primary limiting resource, playing a key role in shaping the composition of bacterial communities. Notably, elevated N availability did not alleviate N limitations or promote biodiversity. Instead, it led to deterministic community assembly processes by increasing the overall demand for N and intensifying negative biological interactions among taxa. These processes favored the selection of specific communities dominated by highly competitive species with overlapping niches. Our findings offer novel insights into the biogeographic patterns of soil bacterial communities, highlighting how resource availability shapes their compositions and has potential ecological implications, including effects on seedling establishment and the resilience of belowground communities to disturbances.

Mulching drive changes in soil microbial community assembly processes and networks across aggregate fractions

Soil microbial community assembly processes and networks in croplands have been widely explored; however, their dynamics and how they regulate winter wheat yield across distinct soil aggregate fractions under the combined effects of mulching and soil horizons have not been comprehensively understood. Therefore, based on a 9-y field experiment, the responses of soil bacterial and fungal community assembly processes and interkingdom association networks to mulching were specifically investigated at the soil aggregation level. Soil properties and microbial biomass were separated into distinct mulching in the topsoil (0–10 cm), and soil water content was considered the most critical factor. The soil bacterial community was affected mainly by mulching and soil horizon compared with the fungal community in microaggregates (<0.25 mm). Notably, the bacterial community displayed more robust stochastic processes than the fungal one, and microbial interkingdom association networks were more complex and stable in micro-than macroaggregates. Soil potential carbon mineralization, pH, and total nitrogen were the dominant properties regulating winter wheat grain yield in combination with microbial community composition, assembly processes, and networks in each soil aggregate class. Wheat yield decreased under straw mulching and was mainly regulated by bacterial community composition and assembly processes. Thus, this study enhanced our understanding of the regulations for wheat yield, which could facilitate soil microbial community management at the aggregation level for sustainable crop production in mulching conservation agroecosystems.

Fertilization regime changes rhizosphere microbial community assembly and interaction in Phoebe bournei plantations

Fertilizer input is one of the effective forest management practices, which improves soil nutrients and microbial community compositions and promotes forest productivity. However, few studies have explored the response of rhizosphere soil microbial communities to various fertilization regimes across seasonal dynamics. Here, we collected the rhizosphere soil samples from Phoebe bournei plantations to investigate the response of community assemblages and microbial interactions of the soil microbiome to the short-term application of four typical fertilizer practices (including chemical fertilizer (CF), organic fertilizer (OF), compound microbial fertilizer (CMF), and no fertilizer control (CK)). The amendments of organic fertilizer and compound microbial fertilizer altered the composition of rhizosphere soil bacterial and fungal communities, respectively. The fertilization regime significantly affected bacterial diversity rather than fungal diversity, and rhizosphere fungi responded more sensitively than bacteria to season. Fertilization-induced fungal networks were more complex than bacterial networks. Stochastic processes governed both rhizosphere soil bacterial and fungal communities, and drift and dispersal limitation dominated soil fungal and bacterial communities, respectively. Collectively, these findings demonstrate contrasting responses to community assemblages and interactions of rhizosphere bacteria and fungi to fertilizer practices. The application of organic fertilization strengthens microbial interactions and changes the succession of key taxa in the rhizosphere habitat.Key points• Fertilization altered the key taxa and microbial interaction• Organic fertilizer facilitated the turnover of rhizosphere microbial communities• Stochasticity governed soil fungal and bacterial community assembly

Impacts of multiple environmental factors on soil bacterial community assembly in heavy metal polluted paddy fields

Soil microorganisms play pivotal roles in driving essential biogeochemical processes in terrestrial ecosystems, and they are sensitive to heavy metal pollution. However, our understanding of multiple environmental factors interaction in heavy metal polluted paddy fields to shape microbial community assembly remain limited. In the current study, we used 16S rRNA amplicon sequencing to characterize the microbial community composition in paddy soils collected from a typical industry town in Taihu region, eastern China. The results revealed that Cd and Pb were the major pollutant, and Proteobacteria, Acidobacteria and Chloroflexi were the dominate indigenous bacterial phyla. Linear regression and random forest analysis demonstrated that soil pH was the most important predictor of bacterial diversity. Mantel analysis showed that bacterial community structure was mainly driven by pH, CEC, silt, sand, AK, total Cd and DTPA-Cd. The constructed bacterial co-occurrence network, utilizing a random matrix theory-based approach, exhibited non-random with scale-free and modularity features. The major modules within the networks also showed significant correlations with soil pH. Overall, our study indicated that soil physiochemical properties made predominant contribution to bacterial community diversity, structure and their association in Cd/Pb polluted paddy fields. These findings expand our knowledge of the key environmental drivers and co-occurrence patterns of bacterial community in polluted paddy fields.

Effects of polypropylene micro(nano)plastics on soil bacterial and fungal community assembly in saline-alkaline wetlands

Microplastic pollution is a major environmental threat, especially to terrestrial ecosystems. To better understand the effects of microplastics on soil microbiota, the influence of micro- to nano-scale polypropylene plastics was investigated on microbial community diversity, functionality, co-occurrence, assembly, and their interaction with soil-plant using high-throughput sequencing approaches and multivariate analyses. The results showed that polypropylene micro/nano-plastics mainly reduced bacterial diversity, not fungal, and that plastic size had a stronger effect than concentration on the assembly of microbial communities. Nano-plastics decreased the complexity and connectivity of both bacterial and fungal networks compared to micro-plastics. Moreover, bacteria were more sensitive and deterministic to polypropylene micro/nano-plastic stress than fungi, as shown by their different growth rates, guanine-cytosine content, and cell structure. Interestingly, the dominant ecological process for bacteria shifted from stochastic drift to deterministic selection with polypropylene micro/nano-plastic exposure. Furthermore, nano-plastics directly or indirectly disrupted the interactions within intra-microbes and between soil-bacteria-plant by altering soil nutrients and stoichiometry (C:N:P) or plant diversity. Collectively, the results indicate that polypropylene nano-plastics pose more ecological risks to soil microbes and their plant-soil interactions. This study sheds light on the potential ecological consequences of polypropylene micro/nano-plastic pollution in terrestrial ecosystems.

Heavy metals drive microbial community assembly process in farmland with long-term biosolids application

Biosolids are considered an alternative to chemical fertilizers due to their rich nutrients. However, long-term biosolids application can lead to heavy metals accumulation, which severely affects soil microbial community compositions. The factors influencing soil microbial community assembly were explored under a 16-year long-term experiment with biosolids applications. Our results indicated that biosolids application significantly increased fungal richness while not for bacterial and arbuscular mycorrhizal (AM) fungal richness. Besides, biosolids application significantly affected soil bacterial, fungal compositions and AM fungal community. Soil microorganisms were clustered into different modules with bacterial and AM fungal communities were affected by both organic matter and heavy metals, while fungal communities were affected by heavy metals (Cr, Ni, and As). The soil bacterial community assembly was dominated by stochastic processes while the fungal and AM fungal community assemblies were mainly driven by deterministic processes. Random forest analysis showed that heavy metals were identified as major drivers (Hg, Cu, Cd, and Zn for bacteria, Pb and Cr for fungi, and As and Ni for AM fungi) of the community assembly process. Overall, our study highlights the significant role of heavy metals in shaping microbial community dynamics and gives a guide for controlling biosolids application.

Distribution pattern and influencing factors of bacterial communities in different soil depths of Caragana jubata shurb in Luya Mountain, China.

Soil microorganisms are important components of terrestrial ecosystems, affecting soil formation and fertility, plant growth and stress tolerance, nutrient turnover and carbon storage. In this study, we collected soil samples (humus layer, 0-10 cm, 10-20 cm, 20-40 cm, and 40-80 cm) from Caragana jubata shrubland in Shanxi subalpine to explore the composition, diversity, and assembly of soil bacterial communities at different depths across the soil profile. The results showed that Actinomycota (19%-28%), Chloromycota (10%-36%) and Acidobacteria (15%-24%), and Proteobacteria (9%-25%) were the dominant bacterial phyla. α-diversity of soil bacterial community significantly decreased with the increases of soil depth. Soil bacterial β-diversity varied across different soil depths. Soil pH, water content, and enzyme activity were the main ecological factors affecting the distribution of soil bacterial communities. Soil bacterial communities had more complex interactions in humus layer and 0-10 cm layer. On the whole, soil bacterial communities were dominated by coexistence in C. jubata shrubland, and the soil bacterial community assembly was driven by random process.

Effects of farmland residual mulch film-derived microplastics on the structure and function of soil and earthworm Metaphire guillelmi gut microbiota

Microplastics derived from polyethylene (PE) mulch films are widely found in farmland soils and present considerable potential threats to agricultural soil ecosystems. However, the influence of microplastics derived from PE mulch films, especially those derived from farmland residual PE mulch films, on soil ecosystems remains unclear. In this study, we analyzed the bacterial communities attached to farmland residual transparent PE mulch film (FRMF) collected from peanut fields and the different ecological effects of unused PE mulch film-derived microplastics (MPs) and FRMF-derived microplastics (MPs-aged) on the soil and earthworm Metaphire guillelmi gut microbiota, functional traits, and co-occurrence patterns. The results showed that the assembly and functional patterns of the bacterial communities attached to the FRMF were clearly distinct from those in the surrounding farmland soil, and the FRMF enriched some potential plastic-degrading and pathogenic bacteria, such as Nocardioidaceae, Clostridiaceae, Micrococcaceae, and Mycobacteriaceae. MPs substantially influenced the assembly and functional traits of soil bacterial communities; however, they only significantly changed the functional traits of earthworm gut bacterial communities. MPs-aged considerably affected the assembly and functional traits of both soil and earthworm gut bacterial communities. Notably, MPs had a more remarkable effect on nitrogen-related functions than the MPs-aged in numbers for both soil and earthworm gut samples. Co-occurrence network analysis revealed that both MPs and MPs-aged enhanced the synergistic interactions among operational taxonomic units (OTUs) of the composition networks for all samples. For community functional networks, MPs and MPs-aged enhanced the antagonistic interactions for soil samples; however, they exhibited contrasting effects for earthworm gut samples, as MPs enhanced the synergistic interactions among the functional contents. These findings broaden and deepen our understanding of the effects of FRMF-derived microplastics on soil ecosystems, suggesting that the harmful effects of aged plastics on the ecological environment should be considered.

Spatial soil heterogeneity rather than the invasion of Spartina alterniflora drives soil bacterial community assembly in an Eastern Chinese intertidal zone along an estuary coastline

The invasion of Spartina alterniflora (S. alterniflora) significantly influences the stability and transformation of soil organic carbon in coastal ecosystems. However, the impact of this invasion on the assembly of soil bacterial communities along estuary coastlines and soil profiles remains unclear. This study involved collecting soil samples from different environments (areas covered with S. alterniflora vs. barren flats) along the coastline of an estuary. The samples were taken at different depths (0–20 cm, 20–40 cm, 40–60 cm, 60–80 cm, 80–100 cm) within a 1-meter soil profile in the intertidal area of Xiaoyangkou Estuary in Jiangsu, China. The invasion of S. alterniflora had a notable impact on soil SOM (soil organic matter), DOC (dissolved organic carbon), POC (particulate organic carbon), and MAOC (mineral-associated organic carbon). Concurrently, the soil layer primarily influenced the levels of soil DOC and MAOC. The dominant bacterial communities inside the soil consisted of Proteobacteria (27.4–50.2 %), Bacteroidota (5.2–23.3 %), and Desulfobacterota (9.5–19.8 %), which participates in several elemental cycles, such as the carbon, nitrogen, sulfur, and phosphorus cycles. The changes in the patterns and functions of bacterial communities related to carbon cycling were mostly associated with the estuary shoreline, rather than being influenced by the invasion of S. alterniflora or variations in soil depths. Soil total carbon (TC) and SOM displayed a greater influence than other soil organic fractions on the distribution of the bacterial community. Furthermore, elements such as As, Cr, and Zn also exerted a significant impact on the assembly of soil bacterial communities. Our research findings suggest that the influence of S. alterniflora invasion on the composition and functioning of soil bacterial communities is contingent upon the specific features of the area. These characteristics, in turn, control the stability of soil carbon and the transformation of various types of soil carbon.

Deciphering the role of biotic factors in community assembly and diversity patterns of soil bacterial communities under different land use

Environmental heterogeneities in climate and soil properties have been recognized as key factors structuring the bacterial community at large scale. Although recent evidence has demonstrated the importance of local biotic interactions in driving soil bacterial communities, it is remains unclear how biotic filtering affects bacterial diversity patterns at large scale. Here, we explored the effect of biotic factors on bacterial community assembly and diversity pattern in agricultural and natural ecosystems based on a continental-scale investigation across a 3689 km latitudinal gradient in Eastern China. Despite of the distinct diversity patterns of soil bacterial communities along latitudes in different ecosystems, biotic factors (the fungal and protist communities) were consistently identified as the most important predictor of the latitudinal variations in the bacterial communities, even when considering the influence from climate and soil variables. The bacterial community assembly processes were dominated by homogeneous selection and were primarily affected by soil pH and protist consumers in upland and forest soils but by fungi and protist phototrophs in paddy soils. The bipartite networks between bacteria, fungi and protists provide further evidence that network complexity and specific interdomain interactions may influence the latitudinal distribution of bacteria, in land use-dependent patterns. Our study provides a novel insight into the critical role of biotic factor in shaping geographic patterns of soil bacterial communities, with important implications for maintaining soil large-scale biodiversity and functions.

Soil salinity is the main factor influencing the soil bacterial community assembly process under long-term drip irrigation in Xinjiang, China.

Identifying the potential factors associated with the impact of long-term drip irrigation (DI) on soil ecosystems is essential for responding to the environmental changes induced by extensive application of DI technology in arid regions. Herein, we examined the effects of the length of time that DI lasts in years (NDI) on soil bacterial diversity as well as the soil bacterial community assembly process and the factors influencing it. The results showed that long-term DI substantially reduced soil salinity and increased soil bacterial diversity while affecting the soil bacterial community structure distinctly. Null model results showed that the soil bacterial community assembly transitioned from stochastic processes to deterministic processes, as NDI increased. Homogeneous selection, a deterministic process, emerged as the dominant process when NDI exceeded 15 years. Both random forest and structural equation models showed that soil salinity was the primary factor affecting the bacterial community assembly process. In summary, this study suggested that soil bacteria respond differently to long-term DI and depends on the NDI, influencing the soil bacterial community assembly process under long-term DI.

Drip irrigation shapes the soil bacterial communities and enhances jujube yield by regulating the soil moisture content and nutrient levels

In the agricultural zones of the arid Xinjiang region of China, reducing irrigation is mandatory. However, irrigation affects the composition and diversity of the soil bacterial community which is vital to crop yield. To the best of our knowledge, very little research has been conducted on the relationships among the soil bacterial community, irrigation method, and yield as well as their underlying in jujube agroecosystems. Here, we investigated the soil physicochemistry and bacterial communities in jujube fields subjected to drip irrigation (DI) and traditional flood irrigation (FI), and their associations with yield at the flowering and fruit set (FFS) and end-of-growth (EG) stages. Under DI, the jujube yield was 8712.00 ± 24.54 kg/hm2, which was 7.64% higher than that obtained under FI (8094.33 ± 43.67 kg/hm2). DI increased the relative soil bacteria community diversity by decreasing the moisture content and increasing the nutrient levels in the soil. DI also transformed the soil bacterial community so that Bacteroidota predominated at the FFS stage and the probiotics Chloroflexi and Firmicutes predominated at the EG stage. A co-occurrence network analysis showed that DI created stable complex Soil bacteria communities in jujube fields, Though Dependentiae and Deferriberota had low relative abundance, they were nonetheless key nodes in the soil bacterial community network. A neutral community model (NCM) revealed that stochastic processes drove the soil bacterial community assembly whereas DI promoted deterministic processes by regulating the soil moisture content and nutrient levels. Partial least squares path modeling (PLS-PM) disclosed that DI affected the soil bacterial community structure by decreasing the moisture content (−0.342 **) and increasing the nutrient levels (0.557 **) in the soil. The PLS-PM also demonstrated that the observed change in the soil bacterial community structure was the main reason for the increase in jujube yield (1.098 **). The present work provides insights into the mechanisms underlying the correlations between the soil bacterial community and crop yield in response to changes in the irrigation method.

Stochastic and deterministic assembly processes of bacterial communities in different soil aggregates

Soil bacterial community assembly determined by both the niche-based deterministic and the stochastic process. However, at aggregate scale, the contribution and limitation of those theories in soil bacterial community assembly process still unknown. In this study, different aggregate fractions with a water-controllable unit were performed to build a simple system, aiming to (i) exhibit a contrasting bacterial community assembly pattern of aggregate fractions after incubation under different water content, (ii) quantify the variations of bacterial community during incubation caused by niches or deterministic factors of physic-chemical characteristics, and (iii) assess the pore water driven immigration rates of neutral or stochastic processes caused by different aggregate fractions on bacterial community assembly by neutral community model (NCM). We found a significantly time-decay of bacteria community of different soil aggregate fractions during the incubation period. Despite of the decrease of the total OTU amounts, the proportion of the unique OTUs in the aggregates of <0.25 mm and shared OTUs in three soil aggregate fractions increased under both saturated and unsaturated conditions. Microbial communities in aggregates of <0.25 mm were more distinctive enriched the core microbiota of Firmicutes and Proteobacteria than other aggregates, which might relate to the higher availability N and pH value. Under water saturated situation, bacterial migration rate of 0.25–1 mm at the early-stage was higher than others indicated the ineligible role of water-driven bacterial dispersal on bacterial community assembly process. Those results revealed the deterministic and stochastic mechanism of soil bacterial community assembly at aggregate scale, which helps to unravel the mysterious soil habitat.

Converse (deterministic and stochastic) ecological process drive soil bacterial and fungal community assembly in subtropical forest

The mechanisms of soil microbial assembly have been well understood at global and regional scales. However, there is a lack of understanding in soil microbial, especially bacterial community assembly and its driving factors at local scales. This study aimed to explore the relationships between plant diversity, microbial diversity and soil properties at a local scale, starting from the two levels of biodiversity, phylogenetic diversity and species diversity. LEfSe analysis revealed significant enrichment differences in bacterial from genera to the phylum among three microhabitats, while fungi are only found to be enriched in certain species in a microhabitat. Significant differences in not only microbial species diversity and phylogenetic diversity but also community structures were found among the three habitats. Null model analysis was used to quantify the relative importance of deterministic and stochastic ecological process. The results shown that homogeneous selection prevailed in bacterial assembly and dispersal limitation dominated the fungal assembly. Although the microbial community structure was drove to converge at the local scale, the driving forces of community assembly of fungi and bacteria are different. Finally, the results of linear regression and structural equation modelling indicated that plant diversity had a greater effect on microbial species and phylogenetic diversity compared to soil properties. Our results emphasized the importance of plant diversity in shaping microbial community assembly and its diversity at local scale in subtropical forest soil.

Microplastics affect soil bacterial community assembly more by their shapes rather than the concentrations

Polyethylene film mulching is a key technology for soil water retention in dryland agriculture, but the aging of the films can generate a large number of microplastics with different shapes. There exists a widespread misunderstanding that the concentrations of microplastics might be the determinant affecting the diversity and assembly of soil bacterial communities, rather than their shapes. Here, we examined the variations of soil bacteria community composition and functioning under two-year field incubation by four shapes (ball, fiber, fragment and powder) of microplastics along the concentration gradients (0.01%, 0.1% and 1%). Data showed that specific surface area of microplastics was significantly positively correlated with the variations of bacterial community abundance and diversity (r=0.505, p<0.05). The fragment- and fiber-shape microplastics displayed more pronounced interfacial continuity with soil particles and induced greater soil bacterial α-diversity, relative to the powder- and ball-shape ones. Strikingly, microplastic concentrations were not significantly correlated with bacterial community indices (r=0.079, p>0.05). Based on the variations of the βNTI, bacterial community assembly actually followed both stochastic and deterministic processes, and microplastic shapes significantly modified soil biogeochemical cycle and ecological functions. Therefore, the shapes of microplastics, rather than the concentration, significantly affected soil bacterial community assembly, in association with microplastic-soil-water interfaces.