Assembly Of Ectomycorrhizal Fungal Communities Research Articles

Community assembly of ectomycorrhizal fungal communities in pure and mixed Pinus massoniana forests

Ectomycorrhizal (EcM) fungi play an important role in nutrient cycling and community ecological dynamics and are widely acknowledged as important components of forest ecosystems. However, little information is available regarding EcM fungal community structure or the possible relationship between EcM fungi, soil properties, and forestry activities in Pinus massoniana forests. In this study, we evaluated soil properties, extracellular enzyme activities, and fungal diversity and community composition in root and soil samples from pure Pinus massoniana natural forests, pure P. massoniana plantations, and P. massoniana and Liquidambar gracilipes mixed forests. The mixed forest showed the highest EcM fungal diversity in both root and bulk soil samples. Community composition and co-occurrence network structures differed significantly between forest types. Variation in the EcM fungal community was significantly correlated with the activities of β-glucuronidase and β−1,4-N-acetylglucosaminidase, whereas non-EcM fungal community characteristics were significantly correlated with β-1,4-glucosidase and β-glucuronidase activities. Furthermore, stochastic processes predominantly drove the assembly of both EcM and non-EcM fungal communities, while deterministic processes exerted greater influence on soil fungal communities in mixed forests compared to pure forests. Our findings may inform a deeper understanding of how the assembly processes and environmental roles of subterranean fungal communities differ between mixed and pure plantations and may provide insights for how to promote forest sustainability in subtropical areas.

Exploring fine-scale assembly of ectomycorrhizal fungal communities through phylogenetic and spatial distribution analyses.

Ectomycorrhizal fungi (EMF) form symbiotic relationship with the roots of host plants. EMF communities are composed of highly diverse species; however, how they are assembled has been a long-standing question. In this study, we investigated from a phylogenetic perspective how EMF communities assemble on Pinus densiflora seedlings at different spatial scales (i.e., seedling scale and root tip scale). P. densiflora seedlings were collected from different habitats (i.e., disturbed areas and mature forests), and their EMF communities were investigated by morphotype sequencing and next-generation sequencing (NGS). To infer assembly mechanisms, phylogenetic relatedness within the community (i.e., phylogenetic structure) was estimated and spatial distribution of EMF root tips was analyzed. The EMF communities on pine seedlings were largely different between the two habitats. Phylogenetically restricted lineages (Amphinema, /suillus-rhizopogon) were abundant in the disturbed areas, whereas species from diverse lineages were abundant in the mature forests (Russula, Sebacina, /tomentella-thelephora, etc.). In the disturbed areas, phylogenetically similar EMF species were aggregated at the seedling scale, suggesting that disturbance acts as a powerful abiotic filter. However, phylogenetically similar species were spatially segregated from each other at the root tip scale, indicating limiting similarity. In the mature forest seedlings, no distinct phylogenetic signals were detected at both seedling and root tip scale. Collectively, our results suggest that limiting similarity may be an important assembly mechanism at the root tip scale and that assembly mechanisms can vary across habitats and spatial scales.

Scale dependency of ectomycorrhizal fungal community assembly processes in Mediterranean mixed forests

The assembly of biological communities depends on deterministic and stochastic processes whose influence varies across spatial and temporal scales. Although ectomycorrhizal (ECM) fungi play a key role in forest ecosystems, our knowledge on ECM community assembly processes and their dependency on spatial scales is still scarce. We analysed the assembly processes operating on ECM fungal communities associated with Cistus albidus L. and Quercus spp. in Mediterranean mixed forests (Southern Spain), for which root tip ECM fungi were characterized by high-throughput sequencing. The relative contribution of deterministic and stochastic processes that govern the ECM fungal community assembly was inferred by using phylogenetic and compositional turnover descriptors across spatial scales. Our results revealed that stochastic processes had a significantly higher contribution than selection on root tip ECM fungal community assembly. The strength of selection decreased at the smallest scale and it was linked to the plant host identity and the environment. Dispersal limitation increased at finer scales, whilst drift showed the opposite pattern likely suggesting a main influence of priority effects on ECM fungal community assembly. This study highlights the potential of phylogeny to infer ECM fungal community responses and brings new insights into the ecological processes affecting the structure and dynamics of Mediterranean forests.

Ectomycorrhizal fungal community assembly on seedlings of a Neotropical monodominant tree

AbstractEctomycorrhizal tree species may benefit from positive plant–soil feedbacks, where soil environments near adult trees enhance conspecific seedling growth and survival. In tropical monodominant forests, seedling survival is particularly important, as seedling banks help maintain stand‐level dominance over generations. Positive plant–soil feedbacks may be mediated by diverse ectomycorrhizal fungal communities, which improve nutrient acquisition of heavily shaded seedlings. Despite the potential importance of these fungi, little is known about ectomycorrhizal fungal community development on seedlings of tropical monodominant trees. In Guyana, we sequentially monitored percent colonization and species composition of ectomycorrhizal fungi on an even‐age cohort of seedlings of the tropical monodominant tree Dicymbe corymbosa (Fabaceae subfamily Detarioideae). Ectomycorrhizal fungi found on D. corymbosa seedlings over a 12‐month period of early development were compared to those of conspecific adults and four other ectomycorrhizal tree species in the region. Species turnover was high (80%) between 6‐ and 12‐month‐old seedlings, though the /russula‐lactarius, /clavulina, and /tomentella‐thelephora lineages were species‐rich on seedlings at all ages. The number of ectomycorrhizal morphotypes per seedling increased with age, but extent of fungal colonization did not. Seedling ectomycorrhizal fungi were shared with sympatric conspecific adults (55%) and, to a lesser extent, regional heterospecific adults (27%), but numerous species were previously unrecorded for Guyana. Over their development D. corymbosa seedlings did not rely strictly on adult trees for their mycobionts but appeared to foster unique assemblages of ectomycorrhizal fungi.

Mycorrhizal and rhizospheric fungal community assembly differs during subalpine forest restoration on the eastern Qinghai-Tibetan Plateau

Mycorrhizosphere is the interface between roots and soil where a myriad of microorganisms mediate plant growth, nutrient acquisition and tolerance to biotic and abiotic stress, and result in driving ecosystem biogeochemical cycling. Understanding the complexity and dynamics of mycorrhizosphere and its ecology and evolution are critical to enhancing forest productivity and ecosystem functioning, especially in high latitude temperate or high altitude alpine forests. However, the fungal community compositions and their driving ecological mechanisms of mycorrhizosphere during forest restoration are poorly documented. In this study, we simultaneously examined the ectomycorrhizal (EM) and rhizospheric fungal communities of two dominant host tree species (Abies faxoniana and Betula albosinensis) in subalpine forest communities with distinct forest restoration stages (30- vs. 60-year) after clear-cutting. Illumina MiSeq sequencing of internal transcribed spacer 2 (ITS2) sequences was adopted. A total of 1222 EM and 5880 rhizosphere fungal operational taxonomic units (OTUs) were obtained at a 97% sequence similarity level, which were mainly dominated by Basidiomycota. Host identity and forest restoration stage had no significant effects on fungal species richness of both EM and rhizospheric fungi. However, the community assembly of EM and rhizospheric fungi was significantly different during forest restoration, with opposite patterns shown on ectomycorrhizae and rhizosphere. The EM fungal community assembly was significantly affected by host identity, stand age and population dynamic, while the rhizosphere fungal community was significantly structured by combinations of host trees biomass, soil properties and spatial distance. Our data provide important insights that community assembly of EM and rhizosphere fungi may respond idiosyncratically during forest restoration, which will help us deeper understanding forest succession, stability and ecosystem functioning on the Qinghai-Tibetan Plateau.

Species turnover (β-diversity) in ectomycorrhizal fungi linked to NH4+ uptake capacity.

Ectomycorrhizal (EcM) fungal communities may be shaped by both deterministic and stochastic processes, potentially influencing ecosystem development and function. We evaluated community assembly processes for EcM fungi of Pseudotsuga menziesii among 12 sites up to 400 km apart in southwest British Columbia (Canada) by investigating species turnover (β-diversity) in relation to soil nitrogen (N) availability and physical distance. We then examined functional traits for an N-related niche by quantifying net fluxes of NH4+, NO3- and protons on excised root tips from three contrasting sites using a microelectrode ion flux measurement system. EcM fungal communities were well aligned with soil N availability and pH, with no effect of site proximity (distance-decay curve) on species assemblages. Species turnover was significant (β(1/2) = 1.48) along soil N gradients, with many more Tomentella species on high N than low N soils, in contrast to Cortinarius species. Ammonium uptake was greatest in the spring on the medium and rich sites and averaged over 190 nmol/m(2)/s for Tomentella species. The lowest uptake rates of NH4+ were by nonmycorrhizal roots of axenically grown seedlings (10 nmol/m(2)/s), followed by Cortinarius species (60 nmol/m(2)/s). EcM roots from all sites displayed only marginal uptake of nitrate (8.3 nmol/m(2)/s). These results suggest NH4+ uptake capacity is an important functional trait influencing the assembly of EcM fungal communities. The diversity of EcM fungal species across the region arguably provides critical belowground adaptations to organic and inorganic N supply that are integral to temperate rainforest ecology.

Ectomycorrhizal fungal community assembly on regenerating Douglas-fir after wildfire and clearcut harvesting

Wildfire severity in forests is projected to increase with warming and drying conditions associated with climate change. Our objective was to determine the impact of wildfire and clearcutting severity on the ectomycorrhizal fungal (EMF) community of Douglas-fir seedlings in the dry forests of interior British Columbia, Canada. We located our study within and surrounding the area of the McLure fire (August 2003). We hypothesized that disturbance would affect EMF community assembly due to reductions in fungal inoculum. Five treatments representing a range of disturbance severities were compared: high severity burn, low severity burn, screefed clearcut (manual removal of forest floor), clearcut, and undisturbed forest. EMF communities in the undisturbed forest were more complex than those in all disturbance treatments. However, aspects of community assembly varied with disturbance type, where the burn treatments had the simplest communities. After 4 months, regenerating seedlings in the burn treatments had the lowest colonization, but seedlings in all treatments were fully colonized within 1 year. EMF communities were similar among the four disturbance types, largely due to dominance of Wilcoxina throughout the study period. However, forest floor retention influenced community assembly as the EMF in the clearcut treatment, where forest floor was retained, had levels of diversity and richness comparable to the undisturbed forest. Overall, the results suggest that increasing forest floor disturbance can alter EMF community assembly in the first year of regeneration. A correlation between poorly colonized seedlings and seedling productivity also suggests a role for productivity in influencing community assembly.