Asian Landraces Research Articles

Proteomic and genomic characterization of Kunitz trypsin inhibitors in wild and cultivated soybean genotypes

In this study, we investigated protein and genetic profiles of Kunitz trypsin inhibitors (KTIs) in seeds of 16 different soybean genotypes that included four groups consisting of wild soybean (Glycine soja), the cultivated soybean (G. max) ancestors of modern N. American soybean cultivars (old), modern N. American soybean (elite), and Asian cultivated soybean landraces that were the immediate results of domestication from the wild soybean. Proteins were well separated by two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) and stained protein cut from a 2D-PAGE indicated that KTI exists as multiple isoforms (spots) in soybean. Protein spots of KTI were identified and characterized using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). Although overall distribution patterns of the KTI protein spots appeared similar, the number and intensity of the protein spots between wild and cultivated genotypes varied. Three KTI peptides were identified in three of the wild genotypes, PI 393551, PI 407027 and PI 407282, in which KTI3 peptide showed highest intensity. The remaining wild genotype, PI 366120, showed four protein spots. In contrast, the ancestors, modern and Asian landrace genotypes showed only two protein spots corresponding to KTI. On the basis of DNA blot analysis, there is one copy of the KTI3 gene in all 16 genotypes. Polymorphism was detected in one of the wild genotypes (PI 366120) both in proteomic and genomic analyses. Our data suggest that the major variation of protein profiles were between wild and cultivated soybean genotypes rather than among genotypes in the same group. Genetic variation of KTI1, KTI2 and KTI3-related genes were detected within and between groups.

Genetic Diversity of Glutenin Protein Subunits Composition in Durum Wheat Landraces [Triticum turgidum ssp. turgidum Convar. durum (Desf.) MacKey] from the Mediterranean Basin

The genetic diversity of high and low molecular weight glutenin subunits of 63 durum wheat landraces from different geographical regions in the Mediterranean Basin was studied using SDS-PAGE. Great variability in glutenin composition was found, with 42 high and low molecular weight glutenin haplotypes, 20 allele combinations at the HMW-GS loci, and 18 at the LMW-GS. All five possible LMW models were detected in all Mediterranean regions. Rare alleles were found at Glu-B1 locus in high frequencies and a priori related alleles to grain quality were also observed. Global genetic diversity index was relatively high (0.67); it ranged from 0.33 to 0.66. Cluster analysis on the frequency patterns of origins grouped genotypes following a geographical structure. Rogers’ distance coefficient on frequency pattern for each region of origin showed two germplasm pools with distinct quality profiles, where South West Asian landraces were very different from the landraces of other Mediterranean areas. The relationship between different regions of origin is discussed and two possible ways of introduction of wheat in the Iberian Peninsula (N Africa and SE Europe) are hypothesized. The use of Mediterranean durum wheat landraces as source of genetic variability for grain quality improvement is highly recommended.

Comparison of European with West Asian and North African winter barleys in tolerance to boron toxicity

Three plastic-house experiments were conducted to compare the tolerance of European with West Asian and North African (WANA) winter barleys to boron (B) toxicity. Experiment I screened 24 winter barley entries with diverse origins. Experiment III tested 420 random accessions from seven European and seven WANA countries. Plants were screened in a soil mixed with boric acid (50 mg B/kg) and foliar B-toxicity symptom scores were recorded. Lower scores indicated higher B-toxicity tolerance. In Experiment II, five lines/varieties from each of the European and WANA groups were grown in pots with two soil B levels (0 and 25 mg B/kg). The West Asian landrace barleys had a lower mean B-toxicity symptom score than the European ones. The Syrian landrace variety normally grown in drier areas had a lower score than the Syrian landrace variety grown in wetter areas. Dry weights of the European and WANA groups were not different without adding B, but dry weight under 25 mg B/kg was lower for the European group than the WANA group. European accessions had a higher mean B-toxicity symptom score than the WANA accessions. Iranian and Afghan accessions had the lowest mean scores among countries. These results support the hypothesis that European winter barley varieties and accessions are less tolerant to B toxicity than those WANA accessions and varieties developed from local landraces. The lower B-toxicity tolerance could be a factor adversely affecting the performance of European winter barley varieties in the highlands of WANA.

Diversity in landraces and cultivars of bottle gourd (Lagenaria siceraria; Cucurbitaceae) as assessed by random amplified polymorphic DNA

Bottle gourd (Lagenaria siceraria) is an African crop with an ancient pantropicaldistribution. Morphological analyses and archaeological evidencesuggest the oceanic dispersals of wild bottle gourd fruits fromAfrica to Asia and the Americas by 10000–15000 B.P., followedby independent domestications on all three continents. AlthoughAfrican and New World landraces (ssp. siceraria) are morphologically distinct from Asian landraces(ssp. asiatica), siceraria-typemorphological characters in New Guinea germplasm has raised questionsconcerning the origins of Asian landraces, including whether or notthere was early germplasm exchange between Asia and the New World.Another area of confusion in bottle gourd systematics and evolutionconcerns the origins and circumscriptions of commercial cultivars,many of which have been subject to undocumented hybridization andselection practices over the past 100–200 years. To clarify theevolutionary histories of bottle gourd landraces and cultivars, 64random amplified polymorphic DNA (RAPD) markersrepresenting 30 primers were examined in 31 landraces and 43 cultivaraccessions of L. siceraria,as well as in a wild relative, L.sphaerica. Principal component analyses of thecorrelation matrices of the band presence/absence data revealedthe following: 1) southern African germplasm represents adivergent lineage from which several cultivars have been selected;2) New World germplasm is distinct and primarily of Africanorigin(s), but possesses Asian affinities as well; 3)landraces from New Guinea are not related to New World germplasm aspreviously hypothesized; 4) commercial cultivars are diverse intheir geographic origins and genetic compositions; and 5) theintegrity and circumscriptions of some cultivars have been confoundedby production practices allowing gene flow among cultivars.

Comparative analyses of RFLP diversity in landraces of Triticum aestivum and collections of T. tauschii from China and Southwest Asia

Chinese accessions of Triticum tauschii and T. aestivum L. from the Sichuan white (SW), Yunnan hulled (YH), Tibetan weedrace (TW), and Xinjiang rice (XR) wheat groups were subjected to RFLP analysis. T. tauschii and landraces of T. aestivum from countries in Southwest Asia were also evaluated. For T. tauschii, a west to east gradient was apparent where the Chinese accessions exhibited less diversity than those from Southwest Asia. Compared to the Southwest Asian gene pool, the Chinese T. tauschii was highly homogeneous giving a low frequency of polymorphic bands (16%) and banding patterns (1.33 per probe) with 75 RFLP probe-HindIII combinations. Accessions of T. tauschii from Afghanistan and Pakistan were genetically more similar to the Chinese T. tauschii than those from Iran. Of 368 bands found for 39 Chinese hexaploid wheat accessions with 63 RFLP probe-HindIII combinations, 28.3% were polymorphic with an average of 2.6 banding patterns per probe and 5.0 bands per genotype. The individual Chinese landrace wheat groups revealed less variation than those from Afghanistan, Iran, and Turkey. When classified into country based groups, however, the diversity level over all Chinese landraces was greater than that of some Southwest Asian landraces, especially those from Afghanistan and Iran . The XR wheat group was genetically distinct from the other three Chinese landrace groups and was more related to the Southwest Asian landraces. The TW group was genetically similar to, but more diverse than, the SW and YH groups. The Chinese landraces had a higher degree of genetic relatedness to the Southwest Asian T. tauschii, particularly to accessions from Iran, rather than to the Chinese T. tauschii. ‘Chinese Spring’ was most related to ‘Chengdu-guang-tou’, a cultivar from the SW wheat group.

Productivity and adaptive capacity of winter wheat landraces and modern cultivars grown under low-fertility conditions

In recent decades, most winter wheat (Triticum aestivum L.) breeding in the United States has been done in field nurseries in which the soil receives ample fertilization. To determine the effects of these breeding efforts on productivity under low-fertility conditions, we evaluated twenty-nine winter wheat genotypes (seven Asian landraces; thirteen standard-height U.S. cultivars released between 1874 and 1971; and nine semidwarf cultivars released between 1977 and 1988) under severe fertility stress at three Kansas, USA locations. Experiments included fertilized and unfertilized treatments. The modern, semidwarf cultivars yielded 18% and 20% more, on average, than landraces and standard-height cultivars under low and high fertility, respectively; however, only the latter difference reached the 5% significance level. At only one location (Hays) was there a significant genotype X fertility interaction: there, 89% of the semidwarf cultivars, only 8% of the standard cultivars, and 57% of the landraces responded to fertilization. The regression coefficient of mean grain yield (unfertilized) on year of introduction or release for standard and semidwarf cultivars was zero, indicating that a century of breeding has produced no genetic improvement in performance under these low-fertility conditions. Although we found that the usual yield advantage of modern cultivars is not expressed under very low fertility, we saw no evidence that older cultivars are superior under those conditions.