Arvicanthis Niloticus Research Articles

A Decade-Long Change in the Elevational Distribution of Non-Volant Small Mammals on Mount Meru, Tanzania

Understanding species distribution across elevational gradients is crucial for developing conservation strategies for montane biotic systems. A survey of small mammals was conducted on Mount Meru at six elevations, ranging between 1500 m and 3650 m. A total of 803 small mammal individuals, including 2 shrew species and 13 rodent species, were documented. Of these, Crocidura newmarki and Lophuromys verhageni were endemic on Mount Meru. Species richness was highest at mid–elevations, which is in line with the global pattern for small mammals. Prior to our study, the most complete data on small mammals on Mount Meru was collected in 2009. Our study provides an opportunity to show how small mammal elevational distribution has changed, over the last decade. We found six species (Arvicanthis niloticus, Mastomys natalensis, Lemniscomys striatus, Dasymys incomtus, Cricetomys ansorgei, and Montemys delectorum), which were not documented in 2009, but did not find Otomys tropicalis. Interestingly, the community composition at higher elevations in 2021 resembles that at lower elevations in 2009, suggesting that small mammal species have moved their range upward over time. Climate change could be a factor associated with the distributional shift found.

Evolution of Guanylate Binding Protein (GBP) Genes in Muroid Rodents (Muridae and Cricetidae) Reveals an Outstanding Pattern of Gain and Loss.

Guanylate binding proteins (GBPs) are paramount in the host immunity by providing defense against invading pathogens. Multigene families related to the immune system usually show that the duplicated genes can either undergo deletion, gain new functions, or become non-functional. Here, we show that in muroids, the Gbp genes followed an unusual pattern of gain and loss of genes. Muroids present a high diversity and plasticity regarding Gbp synteny, with most species presenting two Gbp gene clusters. The phylogenetic analyses revealed seven different Gbps groups. Three of them clustered with GBP2, GBP5 and GBP6 of primates. Four new Gbp genes that appear to be exclusive to muroids were identified as Gbpa, b, c and d. A duplication event occurred in the Gbpa group in the common ancestor of Muridae and Cricetidae (~20 Mya), but both copies were deleted from the genome of Mus musculus, M. caroli and Cricetulus griseus. The Gbpb gene emerged in the ancestor of Muridae and Cricetidae and evolved independently originating Gbpb1 in Muridae, Gbpb2 and Gbpb3 in Cricetidae. Since Gbpc appears only in three species, we hypothesize that it was present in the common ancestor and deleted from most muroid genomes. The second Gbp gene cluster, Gbp6, is widespread across all muroids, indicating that this cluster emerged before the Muridae and Cricetidae radiation. An expansion of Gbp6 occurred in M. musculus and M. caroli probably to compensate the loss of Gbpa and b. Gbpd is divided in three groups and is present in most muroids suggesting that a duplication event occurred in the common ancestor of Muridae and Cricetidae. However, in Grammomys surdaster and Mus caroli, Gbpd2 is absent, and in Arvicanthis niloticus, Gbpd1 appears to have been deleted. Our results further demonstrated that primate GBP1, GBP3 and GBP7 are absent from the genome of muroids and showed that the Gbp gene annotations in muroids were incorrect. We propose a new classification based on the phylogenetic analyses and the divergence between the groups. Extrapolations to humans based on functional studies of muroid Gbps should be re-evaluated. The evolutionary analyses of muroid Gbp genes provided new insights about the evolution and function of these genes.

Ectoparasite load of small mammals in the Serengeti Ecosystem: effects of land use, season, host species, age, sex and breeding status

Ectoparasite load in small mammals can be influenced by both environmental conditions and host species characteristics. However, the nature of these influences is poorly understood in many ecosystems. We used zero-inflated negative binomial (ZINB) regression models with a log link function to assess variation in ectoparasite load among 19 small mammal host species across different land uses (protection in a park, pastoralism and agriculture), habitat types, seasons, age classes, sexes and breeding statuses. We collected 4258 ectoparasites from 612 individual belonging to 19 different species of small mammals. The average ectoparasite load per individual was higher in the pastoral and agricultural lands than in the National Park. Ectoparasite load varied among species and was the highest for the four common and generalist small mammal species (Aethomys sp., Arvicanthis niloticus, Mastomys natalensis, and Gerbilliscus vicinus), most notably in the disturbed pastoral and agricultural lands. It was also higher in the dry than the wet season and for adult males than adult females. These patterns partly reflect the greater mobility of small mammals in the drier conditions; in addition the large body size and home range of males increase the likelihood of encountering parasites. Human disturbance was associated with elevated ectoparasitic load among the small mammals and hence elevated risk of transmission of ectoparasites to humans. As a result, understanding the effect of habitat disturbance on ectoparasite load and its link to zoonotic disease risk should be an important conservation goal and public health priority. Moreover, effective pest control strategies should consider variation in ectoparasite load with land use, habitat type, season and species characteristics.

Genetic data from the extinct giant rat from Tenerife (Canary Islands) points to a recent divergence from mainland relatives.

Evolution of vertebrate endemics in oceanic islands follows a predictable pattern, known as the island rule, according to which gigantism arises in originally small-sized species and dwarfism in large ones. Species of extinct insular giant rodents are known from all over the world. In the Canary Islands, two examples of giant rats, †Canariomys bravoi and †Canariomys tamarani, endemic to Tenerife and Gran Canaria, respectively, disappeared soon after human settlement. The highly derived morphological features of these insular endemic rodents hamper the reconstruction of their evolutionary histories. We have retrieved partial nuclear and mitochondrial data from †C. bravoi and used this information to explore its evolutionary affinities. The resulting dated phylogeny confidently places †C. bravoi within the African grass rat clade (Arvicanthis niloticus). The estimated divergence time, 650 000 years ago (95% higher posterior densities: 373 000–944 000), points toward an island colonization during the Günz–Mindel interglacial stage. †Canariomys bravoi ancestors would have reached the island via passive rafting and then underwent a yearly increase of mean body mass calculated between 0.0015 g and 0.0023 g; this corresponds to fast evolutionary rates (in darwins (d), ranging from 7.09 d to 2.78 d) that are well above those observed for non-insular mammals.

Survey of Animal Fauna in Gohayna District at Sohag Governorate, Egypt

The present work was aimed to identify of animal fauna in Gohayna District, Sohag Governorate, Egypt during 2020/2021 season. The results were revealed the presence of four species of rats included the white bellied rat, Rattus frugivorus the dominant species from, Rattus alexandrines, the Nile grass rat, Arvicanthis niloticus. Rattus norvegicus and Gerbillus sp. Also, found that Mustela sp., and long-eared hedgehog, Hemiechinus auritus. These results to be used in the development of a future plan in effective strategy for implementation of animal pests management programs in cultivated in Sohag Governorate.

Orexin (hypocretin) mediates light-dependent fluctuation of hippocampal function in a diurnal rodent.

Environmental lighting conditions play a central role in cognitive function, but the underlying mechanisms remain unclear. Utilizing a diurnal rodent model, the Nile grass rat (Arvicanthis niloticus), we previously found that daytime light intensity affects hippocampal function in this species in a manner similar to its effects in humans. Compared to animals housed in a 12:12 h bright light-dark (brLD) cycle, grass rats kept in a 12:12 h dim light-dark (dimLD) cycle showed impaired spatial memory in the Morris water maze (MWM) and reduced CA1 apical dendritic spine density. The present study explored the neural substrates mediating the effects of daylight intensity on hippocampal function focusing on the hypothalamic orexin (hypocretin) system. First, animals housed in dimLD were treated with daily intranasal administration of orexin A peptide over five training days of the MWM task. Compared to vehicle controls, this treatment led to superior spatial memory accompanied by increased phosphorylation of Ca2+ /calmodulin-dependent protein kinase II α and glutamate receptor 1 within the CA1. To assess the role of hippocampal orexinergic signaling, an adeno-associated viral vector (AAV) expressing an orexin receptor 1 (OX1R) shRNA was injected into the dorsal hippocampus targeting the CA1 of animals housed in brLD. AAV-mediated knockdown of OX1R within the hippocampus resulted in deficits in MWM performance and reduced CA1 apical dendritic spine density. These results are consistent with the view that the hypothalamic orexinergic system underlies the modulatory role of daytime illumination on hippocampal function in diurnal mammals.

Diabetic cataract in the Nile grass rat: A longitudinal phenotypic study of pathology formation.

Diabetes is a major risk factor for cataract, the leading cause of blindness worldwide. There is an unmet need for a realistic model of diabetic cataract for mechanistic and longitudinal studies, as existing models do not reflect key aspects of the complex human disease. Here, we introduce and characterize diabetic cataract in the Nile grass rat (NGR, Arvicanthis niloticus), an established model of metabolic syndrome and type 2 diabetes (T2D). We conducted a longitudinal study of cataract in over 88 NGRs in their non-diabetic, pre-diabetic, and diabetic stages of metabolism. Oral glucose tolerance test (OGTT) results distinguished the metabolic stages. Diverse cataract types were observed in the course of diabetes, including cortical, posterior subcapsular (PSC), and anterior subcapsular (ASC), all of which succeeded a characteristic dotted ring stage in all animals. The onset ages of diabetes and cataract were 44±3 vs 29±1 (P<.001) and 66±5 vs 58±6 (not significant) weeks in females and males, respectively. Histological analysis revealed fiber disorganization, vacuolar structures, and cellular proliferation and migration in cataractous lenses. The lens epithelial cells (LECs) in non-diabetic young NGRs expressed the stress marker GRP78, as did LECs and migrated cells in the lenses of diabetic animals. Elucidating mechanisms underlying LEC proliferation and migration will be clinically valuable in prevention and treatment of posterior capsule opacification, a dreaded complication of cataract surgery. Marked changes in N-cadherin expression emphasized a role for LEC integrity in cataractogenesis. Apoptotic cells were dispersed in the equatorial areas in early cataractogenesis. Our study reveals diverse cataract types that spontaneously develop in the diabetic NGR, and which uniquely mirror the cataract and its chronic course of development in individuals with diabetes. We provide mechanistic insights into early stages of diabetic cataract. These unique characteristics make NGR highly suited for mechanistic studies, especially in the context of metabolism, diabetes, and aging.

Impact of daytime light intensity on the central orexin (hypocretin) system of a diurnal rodent (Arvicanthis niloticus).

The neuropeptide orexin/hypocretin is implicated in sleep and arousal, energy expenditure, reward, affective state and cognition. Our previous work using diurnal Nile grass rats (Arvicanthis niloticus) found that orexin mediates the effects of environmental light, particularly daytime light intensity, on affective and cognitive behaviours. The present study further investigated how daytime light intensity affects the central orexin system in male and female grass rats. Subjects were housed for 4weeks in 12:12hr dim light:dark (50 lux, dimLD) or in 12:12hr bright light:dark cycle (1000 lux, brightLD). Day/night fluctuations in some orexin measures were also assessed. Despite similar hypothalamic prepro-orexin mRNA expression across all conditions, there were significantly more orexin-immunoreactive neurons, larger somata, greater optical density or higher orexin A content at night (ZT14) than during the day (ZT2), and/or in animals housed in brightLD compared to dimLD. Grass rats in brightLD also had higher cisternal CSF levels of orexin A. Furthermore, orexin receptor OX1R and OX2R proteins in the medial prefrontal cortex were higher in brightLD than dimLD males, but lower in brightLD than dimLD females. In the CA1 and dorsal raphe nucleus, females had higher OX1R than males without any significant effects of light condition, and OX2R levels were unaffected by sex or light. These results reveal that daytime light intensity alters the central orexin system of both male and female diurnal grass rats, sometimes sex-specifically, and provides insight into the mechanisms underlying how daytime light intensity impacts orexin-regulated functions.

Land use and habitat selection by small mammals in the Tanzanian Greater Serengeti Ecosystem

Habitat selection is central to shaping the abundance and distribution of organisms in space and time. We analysed land use (National Park, pastoralism and agriculture) and habitat selection by small mammals in the Tanzanian Serengeti Ecosystem, and how selection varies with rainfall seasonality and characteristics of used microhabitats. We trapped 612 small mammals in five habitat types distributed over the three land uses in the wet and dry seasons. The majority of the nine commonest species selected at least two of the three land uses and several habitat types, indicating wide distribution in the ecosystem. Crocidura spp., Dendromus melanotis, Graphiurus murinus, Mus sorella and Mus sp. selected the more intact and least disturbed National Park and apparently avoided the disturbed pastoral or agricultural lands while Aethomys sp., Arvicanthis niloticus, Gerbilliscus vicinus and Mastomys natalensis mainly selected the pastoral and agricultural lands. Land use and habitat selection patterns were consistent between seasons for four species. Thus, D. melanotis, G. murinus, Crocidura spp. and Mus sp. selected the park in both seasons but had lower relative abundances in the dry season. Pest and opportunistic species that prefer seeds mainly selected either the shrubland and cropland in both seasons (A. niloticus and G. vicinus), or the cropland in both the pastoral and agricultural lands but had higher relative abundances in the dry season (Aethomys sp. and M. natalensis). Most habitat specialists selected the park, which comprised of more diverse and less disturbed habitats. In contrast, generalist and pest species selected the disturbed pastoral and agricultural lands, implying that intensifying human activities near protected area edges favor opportunistic and pest species less sensitive to disturbance. These findings show that human disturbance alters ecological communities, impoverishing them by displacing specialist species to the benefit of pest species, which, in turn, may negatively affect human activities and livelihoods.

Tick-borne relapsing fever Borreliosis, a major public health problem overlooked in Senegal.

BackgroundTick-borne relapsing fever (TBRF) is the most common vector-borne bacterial disease in humans in West Africa. It is frequently clinically confused with malaria. Our study aims to determine, on a micro-geographic scale, the conditions for the maintenance and spread of TBRF in the Niakhar district of Senegal.Methodology/Principal findingsWe conducted clinical, entomological and animal reservoir investigations. Field surveys were carried out in order to investigate the presence of Ornithodoros sonrai vector ticks and to detect Borrelia spp. by qPCR using the 16S rRNA and glpQ genes, respectively. Micromammal trapping series were carried out inside homes and Borrelia infection was detected using brain tissue qPCR. Capillary blood samples from febrile patients were also tested for Borrelia using qPCR. More than 97% (40/41) of the villages surveyed were infested with O. sonrai ticks. The prevalence of Borrelia spp. infections in ticks was 13% (116/910), and over 73% (85/116) were positively confirmed as being Borrelia crocidurae. Borreliosis cases accounted for 12% (94/800) of episodes of fever and all age groups were infected, with children and young people between the ages of 8–14 and 22–28 being the most infected by the disease (16% and 18.4%). TBRF cases occurred in all seasons, with a peak in August. In two species of small rodents that were found to be infected (Arvicanthis niloticus, Mus musculus), the proportion of Borrelia infection was 17.5% (10/57), and the highest prevalence of infection (40.9%, 9/22) was observed in A. niloticus.Conclusion/SignificanceOur study indicates that TBRF is an endemic disease in the Niakhar district, where children and young people are the most infected. Arvicanthis niloticus and O. sonrai ticks are massively present and appear to be the main epidemiological reservoirs causing its extensive spread to humans.

Food preference by Nile rat Arvicanthis niloticus in multi choice of different cereal and legume seeds under laboratory conditions

Food preference by Nile rat Arvicanthis niloticus in multi choice of different cereal and legume seeds under laboratory conditions

An inventory of the types of rodent spread in Houses with a study of external parasites of the most dominant species at Esna area, Luxor Governorate, Egypt

This study was conducted to identify of rodent species and the ectoparasites are widely recognized for the type prevalent in homes, at Esna District, Luxor Governorate, Egypt, during 2020 year. The results were revealed that the presence of three species of rats included gray-bellied rat, Rattus rattus alexandrinus the dominant species from, Rattus rattus frugivorus and the Nile grass rat, Arvicanthis niloticus. The results also indicated that the identification of two types of fleas, Xenopsylla cheopis &amp; Pulex irritans, and one species of lice, Polyplax spinulosa, associated with the gray-bellied was identified. The study reports the interest in making integrated control programs for rodents to get rid of them and the risks of their external parasites. Keywords: Rattus r. alexandrinus, Rattus r. frugivorus, A. niloticus Xenopsylla cheopis,Pulex irritans, Polyplax spinulosa

Survey of Animal Fauna in Gohayna District at Sohag Governorate, Egypt

The present work was aimed to identify of animal fauna in Gohayna District, Sohag Governorate, Egypt during 2020/2021season. The results were revealed the presence of four species of rats included the white bellied rat, Rattus frugivorus the dominant species from, Rattus alexandrines, the Nile grass rat, Arvicanthis niloticus. Rattus norvegicus and Gerbillus sp. Also, found that Mustela sp., and long-eared hedgehog, Hemiechinus auritus. These results to be used in the development of a future plan in effective strategy for implementation of animal pest’s management programs in cultivated in Sohag Governorate.

Metformin Preserves β-Cell Compensation in Insulin Secretion and Mass Expansion in Prediabetic Nile Rats.

Prediabetes is a high-risk condition for type 2 diabetes (T2D). Pancreatic β-cells adapt to impaired glucose regulation in prediabetes by increasing insulin secretion and β-cell mass expansion. In people with prediabetes, metformin has been shown to prevent prediabetes conversion to diabetes. However, emerging evidence indicates that metformin has negative effects on β-cell function and survival. Our previous study established the Nile rat (NR) as a model for prediabetes, recapitulating characteristics of human β-cell compensation in function and mass expansion. In this study, we investigated the action of metformin on β-cells in vivo and in vitro. A 7-week metformin treatment improved glucose tolerance by reducing hepatic glucose output and enhancing insulin secretion. Although high-dose metformin inhibited β-cell glucose-stimulated insulin secretion in vitro, stimulation of β-cell insulin secretion was preserved in metformin-treated NRs via an indirect mechanism. Moreover, β-cells in NRs receiving metformin exhibited increased endoplasmic reticulum (ER) chaperones and alleviated apoptotic unfold protein response (UPR) without changes in the expression of cell identity genes. Additionally, metformin did not suppress β-cell mass compensation or proliferation. Taken together, despite the conflicting role indicated by in vitro studies, administration of metformin does not exert a negative effect on β-cell function or cell mass and, instead, early metformin treatment may help protect β-cells from exhaustion and decompensation.

Maternal High-Fiber Diet Protects Offspring against Type 2 Diabetes.

Previous studies have reported that maternal malnutrition is linked to increased risk of developing type 2 diabetes in adulthood. Although several diabetic risk factors associated with early-life environment have been identified, protective factors remain elusive. Here, we conducted a longitudinal study with 671 Nile rats whereby we examined the interplay between early-life environment (maternal diet) and later-life environment (offspring diet) using opposing diets that induce or prevent diet-induced diabetes. Specifically, we modulated the early-life environment throughout oogenesis, pregnancy, and nursing by feeding Nile rat dams a lifelong high-fiber diet to investigate whether the offspring are protected from type 2 diabetes. We found that exposure to a high-fiber maternal diet prior to weaning significantly lowered the risk of diet-induced diabetes in the offspring. Interestingly, offspring consuming a high-fiber diet after weaning did not develop diet-induced diabetes, even when exposed to a diabetogenic maternal diet. Here, we provide the first evidence that the protective effect of a high-fiber diet can be transmitted to the offspring through the maternal diet, which has important implications in diabetes prevention.

Identification of reference genes for real-time polymerase chain reaction gene expression studies in Nile rats fed Water-Soluble Palm Fruit Extract.

The Nile rat (Arvicanthis niloticus) is a novel diurnal carbohydrate-sensitive rodent useful for studies on type 2 diabetes mellitus (T2DM) and the metabolic syndrome. Hepatic responses to T2DM and any interventions thereof can be evaluated via transcriptomic gene expression analysis. However, the study of gene expression via real-time reverse transcription quantitative polymerase chain reaction (RT-qPCR) requires identification of stably expressed reference genes for accurate normalisation. This study describes the evaluation and identification of stable reference genes in the livers from Control Nile rats as well as those supplemented with Water-Soluble Palm Fruit Extract, which has been previously shown to attenuate T2DM in this animal model. Seven genes identified as having stable expression in RNA-Sequencing transcriptome analysis were chosen for verification using real-time RT-qPCR. Six commonly used reference genes from previous literature and two genes from a previous microarray gene expression study in Nile rats were also evaluated. The expression data of these 15 candidate reference genes were analysed using the RefFinder software which incorporated analyses performed by various algorithms. The Hpd, Pnpla6 and Vpp2 genes were identified as the most stable across the 36 samples tested. Their applicability was demonstrated through the normalisation of the gene expression profiles of two target genes, Cela1 and Lepr.In conclusion, three novel reference genes which can be used for robust normalisation of real-time RT-qPCR data were identified, thereby facilitating future hepatic gene expression studies in the Nile rat.

Effects of prescribed burning on rodent community ecology in Serengeti National Park

A study on the effects of prescribed burning on rodent community ecology was conducted in Serengeti National Park, Tanzania. The study aimed at generating ecological knowledge about the changes in rodent communities when areas of the park are intentionally burned to regulate grasslands or reduce undergrowth that can lead to uncontrolled forest fires. A completely randomized design (CRD) factorial layout with two treatments (burned and unburned) and two replications was applied. A total of 148 animals comprising six species of rodent and one insectivore were captured over 2,940 trap nights. Among the trapped individuals, 41.9% were adults, 16.1% juveniles and 41.9% sub-adults. Males and females were at parity between treatments. Species abundance was estimated using the minimum number alive (MNA) method for different rodent species and was found to vary with treatment where Mastomys natalensis declined in burned plots whilst Arvicanthis niloticus increased. However, species diversity did not differ across treatments (F1, 10 = 0.15, p = 0.70). Differences in the reproductive condition of female M. natalensis (z = 4.408, df = 15, p < 0.001) and A. niloticus (z = 2.381, df = 15, p = 0.017) were observed between treatments showing that higher numbers of reproductively active females were observed in burned plots in March, whilst in unburned plots more were observed from November to February. Conservation strategies involving periodic habitat burning should, therefore, consider small mammal reproductive periods to ensure that species potentially at risk are not adversely affected and able to rapidly recover from the effects of burning in temporarily lowering food resources and longer term impacts of increased predation caused by reduced cover.

Hepato- and nephro-toxicity of coumatetralyl rodenticide in some wild rat species

Coumatetralyl (COM) is an anticoagulant rodenticide absorbed quickly after oral dosing. It causes rodent’s death due to internal or external bleeding after complete depletion of plasma vitamin K-dependent coagulation factors. The present study aimed was to shed light on metabolic alterations as the potential hepato- and nephrotoxicity caused by ¼ LD50 COM in Rattus rattus, Arvicanthis niloticus, and Geribellus geribellus wild rat species. Elevation in plasma alanine aminotransferase (ALT), aspartate aminotransferase (AST), albumin, total free amino acids, and erythrocyte lysate glucose-6-phosphate dehydrogenase levels were observed in COM fed rats. Furthermore, plasma creatinine and urea and free hemoglobin levels increased following COM exposure in the challenged rats compared with that in the control ones. It was concluded that ¼ LD50 COM induced hepato- and nephron-toxicity in the fighting rodents.

English

This work examined population demography and reproductive seasonality among small mammals under protection, pastoralism and agriculture in the Serengeti Ecosystem in 2017 and 2018. Small mammals were trapped to quantify variation in the proportions of actively breeding individuals, juvenile recruitment and adult sex ratio across land use types and seasons. Breeding peaked in the wet season, reflecting a corresponding underlying peak in resource availability and quality. The mean community proportion of reproductively active individuals was greater for females (60%) than males (40%) and under pastoralism than protection or agriculture. Juvenile recruitment was the highest in the pastoral land in the dry season. Adult sex ratio was biased towards males across all land use types and seasons but towards females in the pastoral than the agricultural land. This concurs with the Trivers-Willard hypothesis that nutritionally stressed females should produce more female offspring. Two generalist and pest species (Mastomys natalensis and Arvicanthis niloticus) dominated the pastoral areas indicating human disturbance. Anthropogenic activities degrade habitats, altering population demographics and promoting habitat generalists and pest species. Protection promotes habitat intactness and reduces opportunistic pests typically abundant in disturbed landscapes. Consequently, enhancing conservation around protected areas can improve diversity and control the abundance of opportunistic pest species. &nbsp; Key words: Small mammals, seasonal breeding, juvenile recruitment, adult sex ratio, Serengeti ecosystem, pastoralism, agriculture, protection, rainfall, land use.

Abundance and microhabitat use of rodent species in crop fields and bushland in Ethiopia

The abundance and microhabitat use of rodents were investigated in four different habitats: two rain-fed crop fields with differing stone bund density, an irrigated field and bushland. A total of 444 individual small mammals belonging to six rodent and one shrew species were recorded in trapping grids and line transects. Of these, 230 individuals (52%) belonged to three pest rodent species of crop fields in northern Ethiopia: Stenocephalemys albipes (65%), Mastomys awashensis (25%) and Arvicanthis niloticus (10%). Population abundance of the three species was higher in the early dry season compared to the rainy season. While the bushland was significantly (p < 0.05) favoured by S. albipes and M. awashensis in both seasons, the irrigated field was preferred by Arvicanthis niloticus in the early dry season. In the early dry season, the microhabitat use of A. niloticus was strongly associated with the type of ground cover (herb) (R2adj = 0.152, P < 0.01). While M. awashensis was associated with vegetation density (R2adj = 0.13, P < 0.01), S. albipes was associated with vegetation cover (R2adj = 0.102, P < 0.001). The findings indicate that co-occurring pest rodent species prefer different microhabitats. Understanding their co-occurrence particularly in crop fields is vital for crop protection as they are known serious agricultural pests in northern Ethiopia.