Artificial Substrate Samplers Research Articles

Effects of diluted effluent on aquatic macroinvertebrate communities at the McClean Lake uranium operation in northern Saskatchewan

Diluted treated effluent from the McClean Lake uranium mill in northern Saskatchewan is released into Vulture Lake, which flows into the east basin of McClean Lake; this input could potentially cause a variety of disturbances to the aquatic systems. This study aimed to determine the potential effects of diluted effluent exposure (metals and major ions) on benthic macroinvertebrates in Vulture Lake and McClean Lake. Two monitoring locations located in Vulture Lake and eight in McClean Lake were used for collection water, sediment, and benthic macroinvertebrates. Complementary surface water bioassays were performed with larvae of the midge Chironomus dilutus using lake water from selected sites. Results indicated that total macroinvertebrate abundance and Margalef index (MI) did not follow the diluted effluent pattern. In addition, while the MI from artificial substrate samplers showed higher values in Vulture Lake and lower values at McClean Lake sites 4 and 5 (closer to effluent diffuser), the values recorded for sediment grab samples registered lower indices in Vulture Lake and higher values for sites 4 and 5. The final model from a Generalized Additive Modelling (GAM) approach suggested that electrical conductivity (EC), selenium (Se), and chloride (Cl) in water, and total organic carbon (TOC) and cadmium (Cd) in sediment are key variables that collectively may have influenced macroinvertebrate community composition at the study sites. Finally, across all test endpoints in the bioassays, exposure to lake water from Vulture Lake and McClean Lake had no statistically significant effects on C. dilutus.

Diversity and distribution of benthic dinoflagellates in Tonga include the potentially harmful genera Gambierdiscus and Fukuyoa

Benthic dinoflagellates that can cause illness, such as ciguatera poisoning (CP), are prevalent around the Pacific but are poorly described in many locations. This study represents the first ecological assessment of benthic harmful algae species in the Kingdom of Tonga, a country where CP occurs regularly. Surveys were conducted in June 2016 in the Tongatapu island group, and in June 2017 across three island groups: Ha'apai, Vava'u, and Tongatapu. Shallow subtidal coastal habitats were investigated by measuring water quality parameters and conducting quadrat surveys. Microalgae samples were collected using either macrophyte collection or the artificial substrate method. Benthic dinoflagellates (Gambierdiscus and/or Fukuyoa, Ostreopsis, and Prorocentrum) were counted using light microscopy, followed by molecular analyses (real-time PCR in 2016 and high throughput sequencing (metabarcoding) in 2017) to identify Gambierdiscus and Fukuyoa to species level. Six species were detected from the Tongatapu island group in 2016 (G. australes, G. carpenteri, G. honu, G. pacificus, F. paulensis, and F. ruetzleri) using real-time PCR. Using the metabarcoding approach in 2017, a total of eight species (G. australes, G. carpenteri, G. honu, G. pacificus, G. cheloniae, G. lewisii, G. polynesiensis, and F. yasumotoi) were detected. Species were detected in mixed assemblages of up to six species, with G. pacificus and G. carpenteri being the most frequently observed. Ha'apai had the highest diversity with eight species detected, which identifies this area as a Gambierdiscus diversity ‘hotspot’. Vava'u and Tongatapu had three and six species found respectively. Gambierdiscus polynesiensis, a described ciguatoxin producer and proposed causative agent of CP was found only in Ha'apai and Vava'u in 2017, but not in Tongatapu in either year. Ostreopsis spp. and Prorocentrum spp. were also frequently observed, with Prorocentrum most abundant at the majority of sites. In 2016, the highest number of Gambierdiscus and/or Fukuyoa cells were observed on seagrass (Halodule uninervis) from Sopu, Tongatapu. In 2017, the highest numbers of Gambierdiscus and/or Fukuyoa from artificial substrate samples were recorded in the Halimeda dominant habitat at Neiafu Tahi, Vava'u, a low energy site. This raised the question of the effect of wave motion or currents on abundance measurements from artificial substrates. Differences in detection were noticed between macrophytes and artificial substrates, with higher numbers of species found on artificial substrates. This study provides a baseline of benthic dinoflagellate distributions and diversity for Tonga that may be used for future studies and the development of monitoring programmes.

An Assessment of the Toxicity of Pesticide Mixtures in Periphyton from Agricultural Streams to the Mayfly Neocloeon triangulifer.

Residual concentrations of pesticides are commonly found outside the intended area of application in Ontario's surface waters. Periphyton are a vital dietary component for grazing organisms in aquatic ecosystems but can also accumulate substantial levels of pesticides from the surrounding water. Consequently, grazing aquatic organisms are likely subjected to pesticide exposure through the consumption of pesticide-contaminated periphyton. The objectives of the present study were to determine if pesticides partition into periphyton in riverine environments across southern Ontario and, if so, to determine the toxicity of pesticides in periphyton when fed to the grazing mayfly Neocloeon triangulifer. Sites with low, medium, and high pesticide exposure based on historic water quality monitoring data were selected to incorporate a pesticide exposure gradient into the study design. Artificial substrate samplers were utilized to colonize periphyton in situ, which were then analyzed for the presence of approximately 500 pesticides. The results demonstrate that periphyton are capable of accumulating pesticides in agricultural streams. A novel 7-day toxicity test method was created to investigate the effects of pesticides partitioned into periphyton when fed to N. triangulifer. Periphyton collected from the field sites were fed to N. triangulifer and survival and biomass production recorded. Survival and biomass production significantly decreased when fed periphyton colonized in streams with catchments dominated by agricultural land use (p < 0.05). However, the relationship between pesticide concentration and survival or biomass production was not consistent. Using field-colonized periphyton allowed us to assess the dietary toxicity of environmentally relevant concentrations of pesticide mixtures; however, nutrition and taxonomic composition of the periphyton may vary between sites. Environ Toxicol Chem 2023;42:2143-2157. © 2023 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.

Ecosystem responses of shallow thermokarst lakes to climate-driven hydrological change: Insights from long-term monitoring of periphytic diatom community composition at Old Crow Flats (Yukon, Canada).

Shallow waterbodies are abundant in Arctic and subarctic landscapes where they provide productive wildlife habitat and hold cultural and socioeconomic importance for Indigenous communities. Their vulnerability to climate-driven hydrological and limnological changes enhances a need for long-term monitoring data capable of tracking aquatic ecosystem responses. Here, we evaluate biological and inferred physicochemical responses associated with a rise in rainfall-generated runoff and increasingly positive lake water balances in Old Crow Flats (OCF), a 5600 km2 thermokarst landscape in northern Yukon. This is achieved by analyzing periphytic diatom community composition in biofilms accrued on artificial-substrate samplers at 14 lakes collected mostly annually during 2008-2019 CE. Results reveal that diatom communities at 10 of the 14 lakes converged toward a composition typical of lakes with rainfall-dominated input waters. These include six of nine lakes that were not initially dominated by rainfall input. The shifts in diatom community composition infer rise of lake-water pH and ionic content, and they reveal that northern shallow lake ecosystems are responsive to climate-driven increases in rainfall. Based on data generated during the 12 -year-long monitoring period, we conclude that lakes located centrally within OCF are most vulnerable to rapid climate-driven hydroecological change due to flat terrain, larger lake surface area, and sparse terrestrial vegetation, which provide less resistance to lake expansion, shoreline erosion, and sudden drainage. This information assists the local Indigenous community and natural resource stewardship agencies to anticipate changes to traditional food sources and inform adaptation options.

Avaliação da comunidade de macroinvertebrados em viveiros escavados na presença e ausência de peixes

Abstract Aim In the present study, the structure of the benthic invertebrates in ponds in the presence and absence of Nile tilapia was evaluated. Methods The benthic macroinvertebrates and physicochemical parameters were analyzed for a period of eight weeks, every 15 days, in two ponds (one with fish and the other without fish). Benthic invertebrates were sampled with artificial substrate samplers, made with cheap and common materials, like expanded clay, loofah leaves and gravel. Results With the exception of turbidity, the other physical and chemical variables of water quality were within the ideal limits for tilapia farming. Despite that, there was a significant difference for all physical-chemical parameters monitored, and the average turbidity was much higher in pond with fish. The use of artificial substrate samplers for biomonitoring was effective in the colonization of several taxa in a short period of time (15 days). For benthic community metrics, organism richness, diversity and evenness were significantly higher in the pond without fish. On the other hand, the dominance of Chironomidae and the abundance of Glossiphonidae were much higher in the pond with fish. For Chironomidae, this family was dominant in both treatments, but reached a higher frequency in the pond with fish (98.49%) than in pond without fish (92.87%). The presence of sensitive families, like Leptoceridae (Order Trichoptera), was higher in the pond with no fish, as well as the metric of Ephemeroptera, Plecoptera and Trichoptera families (% EPT). Conclusions The presence of fish altered the macrobenthic community, since metrics of richness and diversity presented lower values in pond with fish.

Compare the efficiency of artificial substrates and leaf litter substrates in macro invertebrates aggregation samples at Gilgel Gibe Watershade, Southwest Ethiopia

The utility of artificial and natural substrate samplers affects the distribution of macro invertebrates in freshwater ecosystems. This study evaluated the efficiency of litter substrates of Croton macrostachyus, Eucalyptus grandis, Ficus sure, and Salix subserrata and artificial substrates/ bricks in terms of macro invertebrates colonization, abundance, family richness, uniformity, and composition of the sampled macro invertebrates. Few researchers have evaluated the efficiency of artificial and natural substrates in the colonization and dispersal of macro invertebrates in freshwater ecosystems. The objectives of this assessment were to evaluate the efficiency of artificial and natural substrate samplers in collecting macro invertebrates for water quality assessments of the Gilgel Gibe Watershade and its tributaries. Five sampling areas were chosen to compare macro invertebrates colonization in relation to the effect of inorganic (bricks) and leaf litter as substrates. Four organic or bedding substrates were selected and collected from the upper and lower study sites based on native and exotic plant species and their diversity along the study sites. Therefore, the following litter species were collected: Croton macrostachyus, Eucalyptus grandis, Ficu ssure, and Salix subserrata. After 30 days, all samples from each site were collected. Past software was used for descriptive and diversity indices analysis. A total of 5491 macro invertebrates individuals were counted on both substrates (artificial/bricks and natural/litter species). The compositions of Ephemeroptera and Trichoptera differed by litter substrates and were consistently higher in litter bags containing artificial substrates. In general, the family richness, uniformity, and composition of the artificial substrate samplers for macro invertebrates were higher than those of the litter substrates, which may indicate that the artificial substrates was more efficient than the litter substrates in dispersing macro invertebrates due to its ability to allocate habitat support to macro invertebrates.

Application of autonomous sensor technology to estimate selenium exposure and a site-specific selenium threshold in a Canadian boreal lake.

There is an increasing trend in the use of real-time sensor technology to remotely monitor aquatic ecosystems. Commercially available probes, however, are currently not able to measure aqueous selenium (Se) concentrations. Because of the well-described bioaccumulation potential and associated toxicity of Se in oviparous vertebrates, it is crucial to monitor Se concentrations at sites receiving continuous effluent Se input. This study aimed to estimate Se concentrations in a boreal lake (McClean Lake) downstream from a Saskatchewan uranium mill using real-time electrical conductivity (EC) data measured by autonomous sensors. Additionally, this study aimed to derive a site-specific total aqueous Se (TSe) threshold based on Se concentrations in periphyton and benthic macroinvertebrates sampled from the same lake. To characterize effluent distribution within the lake, eight Smart Water (Libelium) sensor units were programmed to report EC and temperature for five and seven consecutive weeks in 2018 and 2019, respectively. In parallel, periphyton and benthic macroinvertebrates were sampled with Hester-Dendy's artificial substrate samplers (n = 4) at the same sites and subsequently analyzed for Se concentrations. Electrical conductivity was measured with a handheld field meter for sensor data validation and adjusted to the median lake water temperature (13 °C) registered for the deployment periods. Results demonstrated good accuracy of sensor readings relative to handheld field meter readings and the successful use of real-time EC in estimating TSe exposure (r = 0.87; r2 = 0.84). Linear regression equations derived for Se in detritivores versus Se in periphyton and Se in periphyton versus sensor-estimated TSe were used to estimate a site-specific TSe threshold of 0.7 µg/L (±0.2). Moreover, mean Se concentrations in periphyton (16.7 ± 4.4 µg/g dry weight [d.w.]) and benthic detritivores (6.0 ± 0.4 µg/g d.w.) from one of the exposure sites helped identify an area with potential for high Se bioaccumulation and toxicity in aquatic organisms in McClean Lake. Integr Environ Assess Manag 2023;19:395-411. © 2022 SETAC.

Biomonitoring as a potential tool for water quality in tilapia culture: a case study of Baixa Mogiana region of São Paulo State, Brazil

The objectives of this study were to test an artificial substrate sampler method for aquaculture ponds and assess the water quality based on the benthic macroinvertebrate community living in fishpond sediment at four farms with tilapia production in the Baixa Mogiana region of São Paulo State, Brazil. Benthic macroinvertebrates were monitored every 15days for 3months. Approximately 500,000 organisms distributed in 47 taxa were collected. Chironomidae, Glossiphonidae, Hirudinidae, Libelullidae, Oligochaeta, and Polycentropodidae were present in all collected samples, with the dominance of Chironomidae in the benthic community. Polycentropodidae, a sensitive family to organic pollution, had a greater abundance in fish farms with better environmental conditions. Significant differences in dissolved oxygen and pH were observed among fishponds at different fish farms. Biomonitoring with artificial substrate is a simple and low-cost alternative to monitoring water quality of tilapia culture in fishponds. The artificial substrate sampling method was effective, but the evaluation of more critical conditions of water quality would improve the method and enhance the knowledge of taxa and ecology of macrobenthic organisms in fishponds.

Application of artificial substrate samplers to assess enrichment of metals of concern by river floodwaters to lakes across the Peace-Athabasca Delta

Study regionPeace-Athabasca Delta (PAD), northeastern Alberta. Study focusPotential for downstream delivery of contaminants via Athabasca River floodwaters to lakes of the PAD has raised local to international concern. Here, we quantify enrichment of eight metals (Be, Cd, Cr, Cu, Ni, Pb, V, Zn) in aquatic biota, relative to sediment-based pre-industrial baselines, via analysis of biofilm-sediment mixtures accrued on artificial substrate samplers deployed during summers of 2017 and 2018 in > 40 lakes. Widespread flooding in the southern portion of the delta in spring 2018 allows for assessment of metal enrichment by Athabasca River floodwaters. New hydrological insightsRiver floodwaters are not implicated as a pathway of metal enrichment to biofilm-sediment mixtures in PAD lakes from upstream sources. MANOVA tests revealed no significant difference in residual concentrations of all eight metals in lakes that did not flood versus lakes that flooded during one or both study years. Also, no enrichment was detected for concentrations of biologically inert metals (Be, Cr, Pb) and those related to oil-sands development (Ni, V). Enrichment of Cd, Cu, and Zn at non-flooded lakes, however, suggests uptake of biologically active metals complicates comparisons of organic-rich biofilm-sediment mixtures to sediment-derived baselines for these metals. Results demonstrate that this novel approach could be adopted for lake monitoring within the federal Action Plan.

Macroinvertebrate Taxonomic Richness in Minimally Disturbed Streams on the Southeastern USA Coastal Plain

Collections made over 20 years with a multiple habitat sampling protocol and Hester–Dendy artificial substrate samplers were used to assess macroinvertebrate genera richness in first- to fourth-order streams on the Savannah River Site (SRS), a 780-km2, U.S. government reservation on the upper South Carolina, USA, coastal plain. We collected 312 genera representing 114 families including 268 genera and 87 families of insects. The total number of genera from each stream averaged 139 (97–194) with totals of 171–261 for drainages with more than one stream. Larger streams supported more macroinvertebrate genera, but small headwater streams supported genera not found in higher-order streams and contributed to drainage-wide richness. Sampling effort expressed as number of individuals collected or sites sampled and sampling duration influenced genera richness more than other factors. Genera accumulation curves showed that full representation of richness required several years of sampling and the inclusion of sampling sites that represented all habitats. Upper Three Runs, known for high insect species richness, was the most genera-rich stream, but richness was nearly comparable in other streams after adjusting for sampling effort. Some SRS streams are minimally exposed to anthropogenic disturbance, making them relatively unique in the southeastern USA Sand Hills and valuable as reference models.

Effects of substratum and depth on benthic harmful dinoflagellate assemblages

Microhabitats influence the distribution and abundance of benthic harmful dinoflagellate (BHAB) species. Currently, much of the information on the relationships between BHABs and microhabitat preferences is based on non-quantitative anecdotal observations, many of which are contradictory. The goal of this study was to better quantify BHAB and microhabitat relationships using a statistically rigorous approach. Between April 2016 to May 2017, a total of 243 artificial substrate samplers were deployed at five locations in the Perhentian Islands, Malaysia while simultaneous photo-quadrat surveys were performed to characterize the benthic substrates present at each sampling site. The screen samplers were retrieved 24 h later and the abundances of five BHAB genera, Gambierdiscus, Ostreopsis, Coolia, Amphidinium, and Prorocentrum were determined. Substrate data were then analyzed using a Bray–Curtis dissimilarity matrix to statistically identify distinct microhabitat types. Although BHABs were associated with a variety of biotic and abiotic substrates, the results of this study demonstrated differing degrees of microhabitat preference. Analysis of the survey results using canonical correspondence analysis explained 70.5% (horizontal first axis) and 21.6% (vertical second axis) of the constrained variation in the distribution of various genera among microhabitat types. Prorocentrum and Coolia appear to have the greatest range being broadly distributed among a wide variety of microhabitats. Amphidinium was always found in low abundances and was widely distributed among microhabitats dominated by hard coral, turf algae, sand and silt, and fleshy algae and reached the highest abundances there. Gambierdiscus and Ostreopsis had more restricted distributions. Gambierdiscus were found preferentially associated with turf algae, hard coral and, to a lesser extent, fleshy macroalgae microhabitats. Ostreopsis, almost always more abundant than Gambierdiscus, preferred the same microhabitats as Gambierdiscus and were found in microbial mats as well. With similar habitat preferences Ostreopsis may serve as an indicator organism for the presence of Gambierdiscus. This study provides insight into how BHAB-specific microhabitat preferences can affect toxicity risks.

Assessment of Ciguatera and Other Phycotoxin-Related Risks in Anaho Bay (Nuku Hiva Island, French Polynesia): Molecular, Toxicological, and Chemical Analyses of Passive Samplers

Ciguatera poisoning is a foodborne illness caused by the consumption of seafood contaminated with ciguatoxins (CTXs) produced by dinoflagellates from the genera Gambierdiscus and Fukuyoa. The suitability of Solid Phase Adsorption Toxin Tracking (SPATT) technology for the monitoring of dissolved CTXs in the marine environment has recently been demonstrated. To refine the use of this passive monitoring tool in ciguateric areas, the effects of deployment time and sampler format on the adsorption of CTXs by HP20 resin were assessed in Anaho Bay (Nuku Hiva Island, French Polynesia), a well-known ciguatera hotspot. Toxicity data assessed by means of the mouse neuroblastoma cell-based assay (CBA-N2a) showed that a 24 h deployment of 2.5 g of resin allowed concentrating quantifiable amounts of CTXs on SPATT samplers. The CTX levels varied with increasing deployment time, resin load, and surface area. In addition to CTXs, okadaic acid (OA) and dinophysistoxin-1 (DTX1) were also detected in SPATT extracts using liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS), consistent with the presence of Gambierdiscus and Prorocentrum species in the environment, as assessed by quantitative polymerase chain reaction (qPCR) and high-throughput sequencing (HTS) metabarcoding analyses conducted on passive window screen (WS) artificial substrate samples. Although these preliminary findings await further confirmation in follow-up studies, they highlight the usefulness of SPATT samplers in the routine surveillance of CP risk on a temporal scale, and the monitoring of other phycotoxin-related risks in ciguatera-prone areas.

Habitat complexity affects benthic harmful dinoflagellate assemblages in the fringing reef of Rawa Island, Malaysia

Few studies have investigated the effect of fine-scale habitat differences on the dynamics of benthic harmful dinoflagellate assemblages. To determine how these microhabitat differences affect the distribution and abundance of the major benthic harmful dinoflagellate genera in a tropical coral reef ecosystem, a field study was undertaken between April–September 2015 and January 2016 on the shallow reef flat of the fringing reef of Rawa Island, Terengganu, Malaysia. Sampling of benthic dinoflagellates was carried out using an artificial substrate sampling method (fiberglass screens). Benthic microhabitats surrounding the sampling screens were characterized simultaneously from photographs of a 0.25-m2 quadrat based on categories of bottom substrate types. Five taxonomic groups of benthic dinoflagellates, Ostreopsis, Gambierdiscus, Prorocentrum, Amphidinium, and Coolia were identified, and cells were enumerated using a light microscope. The results showed Gambierdiscus was less abundant than other genera throughout the study period, with maximum abundance of 1.2 × 103 cells 100 cm−2. While most taxa were present on reefs with high coral cover, higher cell abundances were observed in reefs with high turf algal cover and coral rubble, with the exception of Ostreopsis, where the abundance reached a maximum of 3.4 × 104 cells 100 cm−2 in habitats with high coral cover. Microhabitat heterogeneity was identified as a key factor governing the benthic harmful dinoflagellate assemblages and may account for much of the observed variability in dominant taxa. This finding has significant implications for the role of variability in the benthic harmful algal bloom (BHAB) outbreaks and the potential in identifying BHAB-related toxin transfer pathways and the key vectors in the food webs.

Assessment of benthic macroinvertebrates at Nile tilapia production using artificial substrate samplers.

Biomonitoring is a cheap and effective tool for evaluation of water quality, and infer on the balance of aquatic ecosystems. The benthic macroinvertebrates are bioindicators sensitive to environmental changes, and can assist in detecting and preventing impacts such as organic enrichment and imbalance in the food chain. We compared the structure of benthic communities on artificial substrate samplers located in places near and far from net cages for production of Nile tilapia (Oreochromis niloticus). Samplers were manufactured with nylon net, using substrates such as crushed stone, gravel, loofah and cattail leaves. Samples were collected after 30 days of colonization, rinsed and then the specimens were identified and quantified. The following metrics were calculated: richness of Operational Taxonomic Units, Margalef richness, abundance of individuals, Shannon index and evenness index. The macrobenthic community structure was strongly modified according to the proximity of the net cages. Metrics showed significant differences (p < 0.05) between near and distant sites, for both periods (dry and rainy seasons). The position of the samplers significantly affected the structure of macroinvertebrate community, as near sites showed higher values for the community metrics, such as richness and diversity. Near sites presented a larger number of individuals, observed both in the dry and rainy seasons, with a predominance of Chironomidae (Diptera) in the dry season and Tubificidae (Oligochaeta) in the rainy season.

Spatial and Temporal Distribution of Spawning Events and Habitat Characteristics of Sacramento River Green Sturgeon

AbstractSpawning of the Southern Distinct Population Segment of Green Sturgeon Acipenser medirostris occurs annually within the Sacramento River in California. Artificial substrate samplers were used to collect Green Sturgeon eggs between 2008 and 2012 and in a reach of the river 94 river kilometers (rkm) long (rkm 426–332). A total of 268 eggs and 5 posthatch larvae were sampled from seven identified spawning sites between April 2 and July 7, primarily from medium gravel substrates. At these sites the mean water column velocities were 0.8 m/s at depths ranging from 0.6 to 11.3 m (6.4 ± 2.3 m, mean ± SD). We noted an average discharge of 314 m3/s and a median turbidity value of 3.9 NTU during estimated spawning events. Spawning at all sites occurred when average water temperatures were 13.5 ± 1.0°C and during water year types ranging from critically dry to wet. Green Sturgeon eggs averaged 4.11 ± 0.20 mm in diameter (n = 207), were very adhesive, and were between developmental stages 2 (just fertilized) and 44 (posthatch larva). We estimated that eggs were collected from a minimum of 54 different spawning events, based on sample date and location, egg developmental stage at capture, and water temperatures. Green Sturgeon spawning data indicates there is spatial separation from sympatric White Sturgeon A. transmontanus, but some temporal overlap exists. The thermally and hydrologically managed Sacramento River with its numerous diversions and competing water demands appears to have an approximate reach of 120 rkm in the 405‐km‐long river that is favorable for Green Sturgeon spawning in most years. Management decisions need to assess and incorporate the spawning habitat requirements of Green Sturgeon and coordinate this information with that of endangered winter‐run Chinook Salmon Oncorhynchus tshawytscha while attempting to meet the diverse demands of the limited Sacramento River water resources.

The first report on periphytic diatoms on artificial and natural substrate in the karstic spring Bunica, Bosnia and Herzegovina

Abstract This study presents investigations of the periphytic diatoms on artificial (glass slides) and natural substrates in the karstic, limnocrene spring of Bunica situated in the south of Bosnia and Herzegovina. Investigations were performed in summer 2010. Samples were collected every seven days for eight weeks. Physical and chemical characteristics of water, temperature, oxygen saturation, dissolved oxygen, electric conductivity and nutrients as well as fl ow velocity at sample site, were measured simultaneously with each sampling. Physical and chemical characteristics showed low temperature oscillations, good aeration and oligotrophic conditions. In general, greater diatom diversity was noted on natural substrate. A total of 104 diatom species were found on natural substrate and 82 on glass slides. The best represented genera on both types of substrate were Gomphonema and Navicula (each with eight species), Nitzschia (with six species), and Cocconeis (with five species). Achnanthidium exiguum, Achnanthidium minutissimum, Amphora pediculus, Cymbopleura amphicephala and Surirella minuta were recorded in all samples of natural substrate and Gomphonema minutum in artificial substrate samples.

Sympatric Dreissena species in the Meuse River: towards a dominance shift from zebra to quagga mussels

The rapid spread of the quagga mussel, Dreissena rostriformis, in Western Europe is of particular concern since the species is known to have serious ecological and economic impacts, similar to those of the well-established zebra mussel, Dreissena polymorpha. This study aimed (1) to provide an update on the quagga mussel distribution in several Belgian inland waterways, and (2) to check if a shift in dominance between Dreissena species is occurring. Using density measurements and artificial substrate samplers, we compared population dynamics for both species at different time-points based on size-frequency distribution. Our results show that quagga mussels are spreading rapidly throughout Belgium via a number of possible invasion fronts based around large rivers and canals. The quagga mussel became the dominant dreissenid species in both the Meuse River and a number of Belgian canals. In just three years, quagga mussel’s relative abundance increased from 2.9% (±2.9) to 52.6% (±43.1) of the total dreissenid population in the Meuse River. The most rapid increase in abundance has occurred in the Albert Canal, where quagga mussels achieved a mean relative abundance of 80% two years after the first observation. In the Meuse River, the quagga mussel displays a faster growth rate and/or earlier reproduction than the zebra mussel. We discuss different mechanisms that could explain the quagga mussel’s apparent competitive advantage over the zebra mussel.

White Sturgeon Spawning in the San Joaquin River, California, and Effects of Water Management

Abstract Inadequate recruitment is a hallmark of declining sturgeon populations throughout the world. Efforts to understand and address the processes that regulate recruitment are of foremost importance for successful management and recovery. Fish biologists previously only knew San Francisco Estuary white sturgeon (Acipenser transmontanus) to spawn in the Sacramento River, California. We assessed potential white sturgeon spawning locations by deploying artificial substrate samplers during late winter and spring of 2011 and 2012 from river kilometers 115.2 to 145.3 of the San Joaquin River. Collections of fertilized eggs, coupled with hydrology data, confirm that white sturgeon spawned within one and four sites in the San Joaquin River during wet (2011; n = 23) and dry (2012; n = 65) water-year conditions. Small pulse flow augmentations intended to benefit juvenile salmonids appear to have triggered white sturgeon spawning within this system. Understanding the effects of water management on spawning and subsequent recruitment is necessary to increase white sturgeon recruitment to the San Francisco Estuary.

Practical field ecology: a project guide

Tables. Figures. Boxes. Case Studies. Preface. Acknowledgements. 1 Preparation. Choosing a topic for study. Ecological research questions. Monitoring individual species and groups of species. Monitoring species richness. Monitoring population sizes and density. Monitoring community structure. Monitoring behaviour. A note of caution. Creating aims, objectives and hypotheses. Reviewing the literature. Primary literature. Secondary literature. Other sources of information. Search terms. Reading papers. Practical considerations. Legal aspects. Health and safety issues. Implementation. Time management. Project design and data management. Designing and setting up experiments and surveys. Types of data. Sampling designs. Planning statistical analysis. Choosing sampling methods. Summary. 2 Monitoring site characteristics. Site selection. Site characterisation. Habitat mapping. Examination of landscape scale. Measuring microclimatic variables. Monitoring substrates. Monitoring water. Other physical attributes. Measuring biological attributes. Identification. 3 Sampling static organisms. Sampling techniques for static organisms. Quadrat sampling. Pin-frames. Transects. Distribution of static organisms. Forestry techniques. 4 Sampling mobile organisms. General issues. Distribution of mobile organisms. Direct observation. Behaviour. Indirect methods. Capture techniques. Marking individuals. Radio-tracking. Invertebrates. Direct observation. Indirect methods. Capture techniques. Marking individuals. Capturing aquatic invertebrates. Netting. Suction sampling. Benthic coring. Drags, dredges and grabs. Wet extraction. Artificial substrate samplers. Baited traps. Capturing soil-living invertebrates. Dry sieving. Floatation and phase-separation. Tullgren funnels as a method of dry extraction. Chemical extraction. Electrical extraction. Capturing ground-active invertebrates. Pitfall traps. Suction samplers. Emergence traps. Capturing invertebrates from plants. Pootering. Sweep netting. Beating. Fogging. Capturing airborne invertebrates. Sticky traps. Using attractants. Refuges. Flight interception (window and malaise) traps. Light traps. Rotary traps. Water traps. Fish. Direct observation. Indirect methods. Capture techniques. Marking individuals. Amphibians. Direct observation. Indirect methods. Capture techniques. Marking individuals. Reptiles. Direct observation. Indirect methods. Capture techniques. Marking individuals. Birds. Direct observation. Indirect methods. Capture techniques. Marking individuals. Mammals. Direct observation. Indirect methods. Capture techniques. Marking individuals. 5 Analysing and interpreting information. Keys to tests. Exploring and describing data. Transforming and screening data. Spatial and temporal distributions. Population estimation techniques: densities and population sizes. Richness and diversity. Similarity, dissimilarity and distance coefficients. Recording descriptive statistics. Testing hypotheses using basic statistical tests and simple general linear models. Differences between samples. Relationships between variables. Associations between frequency distributions. More advanced general linear models for predictive analysis. Multiple regression. Analysis of covariance and multivariate analysis of variance. Discriminant function analysis. Generalized linear models. Extensions of the generalized linear model. Statistical methods to examine pattern and structure in communities: classification, indicator species and ordination. Classification. Indicator species analysis. Ordination. 6 Presenting the information. Structure. Title. Abstract. Acknowledgements. Contents. Introduction. Methods. Results. Discussion. References. Appendices. Writing style. Tense. Numbers. Abbreviations. Punctuation. Choice of font. Common mistakes. Computer files. Summary. References. Appendix 1 Glossary of statistical terms. Index.

Developing biomonitoring protocols for shallow Arctic lakes using diatoms and artificial substrate samplers

Growing concerns over effects of climate warming and other stressors on shallow Arctic lakes and ponds stimulate the need to develop and implement effective protocols to track changes in ecological integrity. This study assesses seasonal and spatial variability of periphytic diatom communities in a shallow Arctic lake in northern Yukon Territory to establish biomonitoring protocols. Artificial substrate samplers, which mimic macrophytes, allow direct measurement of biotic responses to shifting environmental conditions and control for possible confounding factors (e.g., accrual time and microhabitat type). Artificial substrate samplers were deployed at three locations and retrieved at three times (early, mid, and late) during the ice-free season. Analyses identified that diatom abundance increased exponentially and community composition changed significantly over the ice-free season, despite little variability in water chemistry, but did not differ among the three sampling locations within the lake. Patterns of seasonal succession in diatom community composition were characterized by first arrival of well-dispersed taxa, which included several planktonic taxa, followed by a transitional phase composed of planktonic and periphytic taxa, and culminated with dominance by periphytic species, mainly Achnanthes minutissima (Kutzing). Results highlight the role of seasonal succession on artificial substrate colonization and the need to deploy artificial substrate samplers for the duration of the ice-free season to capture peak periphytic algal abundance. Low spatial variability of shallow Arctic lakes allows for samplers to be deployed at one single location to characterize diatom community composition.