GTP cyclohydrolase I (GTPCH) is the first and rate-limiting enzyme in the tetrahydrobiopterin (BH4) biosynthetic pathway. BH4 is an obligate cofactor for the nitric oxide (NO) synthases and the aromatic amino acid hydroxylases. GTPCH feedback regulatory protein (GFRP) mediates feedback inhibition of GTPCH by BH4, as well as stimulation of GTPCH by phenylalanine. We hypothesized that additional proteins associate with the GTPCH-GFRP complex and contribute to subcellular localization and/or enzymatic regulation of GTPCH-GFRP. Additionally, evidence suggests that GTPCH-GFRP is subject to regulation by phosphorylation, although relevant sites of in vivo modification remain largely unspecified. To identify binding proteins and phosphorylation sites involved in the regulation of GTPCH-GFRP, we developed affinity capture approaches for gentle purification of endogenous GTPCH-GFRP complexes. Capture by His6-tagged GFRP was successful in enriching GTPCH to levels adequate for identification by mass spectrometry. Comparisons of different incubation conditions confirmed that substrate, effectors and inhibitors of GTPCH activity can all increase levels of GTPCH bound to GFRP. More efficient enrichment of GTPCH is being accomplished using a tandem affinity purification (TAP) procedure. The TAP system’s dual elution steps are highly specific and eliminate the need for harsh washing that could disrupt protein complexes. Nanoflow liquid chromatography-coupled tandem mass spectrometry (nLC/MS/MS) is being used to identify co-purifying protein binding partners of GTPCH-GFRP and to reveal post-translational modification sites.
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