Arm Of Chromosome 5D Research Articles

A QTL with Major Effect on Reducing Stripe Rust Severity Detected From a Chinese Wheat Landrace.

Stripe rust, a devastating disease of wheat worldwide, can be controlled by use of diverse wheat resistance resources. To find new quantitative trait loci (QTL) for resistance to stripe rust, Qing Shumai (a Chinese winter wheat landrace possessing slow rusting resistance) was crossed with the susceptible line Mingxian 169. The parents and 276 recombinant inbred lines (RILs) from the cross were evaluated in five environments involving two locations (Gansu and Shandong provinces, China) and four autumn-sown wheat seasons (2008 to 2012). Disease severities on Qing Shumai were lower than 25%, contrasting with approximately 90% on Mingxian 169. The RILs varied in rust intensity in a continuous and monomodal distribution. A bulked segregant analysis approach using 2,344 simple sequence repeat (SSR) markers mapped a major QTL to the long arm of chromosome 6D (hereby designated as QYr.cau-6DL). An SSR marker (gpw5179, https://wheat.pw.usda.gov/GG2/index.shtml ) was identified as being tightly linked with QYr.cau-6DL. Combination between QYr.cau-6DL and the stripe rust-resistance gene Yr18 was examined using 160 F2:3 families of Qing Shumai × RL6058 (a near-isogenic line for Yr18 in the genetic background of the spring wheat Thatcher). The combination elevated the resistance consistently across both winter and spring wheat backgrounds, acting synergistically without undesired epistasis.

Molecular characterization of Fusarium resistance from Elymus repens introgressed into bread wheat

A cross was made of Elymus repens onto the wheat cultivar Crocus and BC1 progeny advanced to BC1F7 by single seed descent. Sixteen lines were selected based on agronomic performance and evaluated in an FHB epiphytotic nursery. Eight lines with FHB resistance were selected. Based on GISH analysis, line PI 142-3-1-5 had 42 chromosomes with one pair of chromosomes showing telomeric translocations on both arms. This chromosome was identified as 3D by using SSR markers. An evaluation of lines with single translocations revealed that FHB resistance was contributed by the translocation on the long arm of chromosome 3D. That line has minimal linkage drag and should be amenable to applications inbreeding for disease resistance.

Chromosome regions associated with the activity of lipoxygenase in the genome D of Triticum aestivum L. under water deficit

Quantitative trait loci (QTLs) associated with the phenotypic expression of the activity of different forms of lipoxygenase (LOX) under water deficit were detected in the chromosomes of the D-genome using intogression lines of common wheat Triticum aestivum L. Chinese Spring (Synthetic 6x). QTL associated with the activity of seed soluble LOX was identified on the short arm of chromosome 4D. The activity of membranebound form of enzyme in the seedlings was mapped to the short arm, while that of a soluble form was on the long arm of chromosome 5D. Two regions responsible for the activity of soluble LOX in the leaves were found on the short arm of chromosome 2D. Three QTLs associated with the activities of chloroplast LOXs were found on the same chromosome: the activity of the soluble form was linked to Xgwm261 and Xgwm539 markers, and the membrane form to Xgdm93 marker. QTLs for the activities of both soluble and membrane-bound LOX in the leaves were identified in the centromeric region of chromosome 7D. The activities of two membrane enzymes in the leaves were linked to Xgdm130 marker on the short arm of this chromosome. Loci associated with the activity of different LOX forms colocalized with QTLs for the shoot mass, gas exchange parameters, chlorophyll fluorescence, content of photosynthetic pigments, and grain productivity of wheat. A correlation between these parameters and the LOX activity was detected and it was shown that various forms of the enzyme were differentially involved in the adaptation of wheat plants to water deficit. The current paper discusses their presumed physiological role.

Allelic Distribution of Puroindoline Genes Affecting the Grain Hardness in Some Iranian Bread Wheat Cultivars

Grain hardness is an important characteristics influencing end-use quality of bread wheat. Wheat with the hard grain texture has higher protein content and more intensive gluten that leads to production of higher bread quality. However, soft texture wheat has lower protein content and weaker gluten, which are suitable for cake and candy production. Grain hardness is determined by the Pina and Pinb genes that are located on the short arm of chromosome 5D. In this study, 83 bread wheat cultivars were characterized for the allelic distribution of Pina and Pinb genes using allele specific markers. At the Pina locus, Pina-D1a and Pina-D1b alleles were observed in 64% and 36% of varieties, respectively. However, at the Pinb locus, 90% of varieties showed Pinb-D1a and 10% had Pinb-D1b allele . Based on the grain hardness index which was measured with the NIR, varieties whit the value less than 50 were considered as soft while above 50 were considered as hard grain texture. The results of marker-trait association showed that Pina had the significant effect (P= 0.019) on the grain hardness, as cultivars with the Pina-D1a allele were significantly softer (49.85±0.37) that those with the Pina-D1b allele (51.38±0.50). The results of regression analysis showed that for the traits including bread volume, grain hardness and water absorption as dependent variables, Pina was entered to the model. The results of this study can help wheat breeders to effectively select parents for the grain hardness in the MAS breeding programs.

TaqSH1-D, wheat ortholog of rice seed shattering gene qSH1, maps to the interval of a rachis fragility QTL on chromosome 3DL of common wheat (Triticum aestivum)

Wheat domestication was a crucial step in the evolution of stable human societies. The loss of rachis brittleness is a major change that differentiates the earliest forms of domesticated wheat from their wild ancestors. We recently identified a novel quan- titative trait locus (QTL) for rachis fragility on the long arm of chromosome 3D using an F2 mapping population derived from the cross between Triticum aestivum 'Chinese Spring' (CS) and a synthetic wheat line, S-6214. Here, we show that the QTL region, in the deletion bin 3DL2-0.27-0.81, is syntenous to the rice chromosome 1 region harboring the seed shatter- ing gene qSH1. We isolated the wheat qSH1 ortholog, TaqSH1-D, on chromosome 3DL. The gene mapped into theconfidenceintervaloftherachis fragility QTL, indicating that it represents a potential candidate gene. Sequence comparison between the parental lines revealed a 189-bp repetitive sequence insertion located 275 bp downstream of the translation termi- nation site of the gene in CS. Although the putative parental proteins are identical, as in rice, a polymor- phism in the regulatory regions may specifically affect its control of rachis fragility.

Mapping a major QTL for hairy leaf sheath introgressed from Aegilops tauschii and its association with enhanced grain yield in bread wheat

Aegilops tauschii, the diploid D genome progenitor of the hexaploid wheat, has been used to improve modern common wheat by creating synthetic hexaploid wheat (SHW) as a bridging mechanism for wheat breeding. Most Ae. tauschii accessions have hairiness on the leaf sheath, whereas the hexaploid common wheat is usually glabrous. In this study a major QTL for leaf sheath hairiness (LSH) was detected on the long arm of chromosome 4D in two recombinant inbred line (RIL) populations produced from SHW-derived cultivar Chuanmai 42. The QTL peak was flanked by markers Xbarc48 and Xbarc1183/D_GB5Y7FA01AGCKH_224, and explained more than 75 % of the phenotypic variation. The QTL allele for LSH was contributed by Chuanmai 42, and originated from Ae. tauschii. In both RIL populations the QTL allele producing hairy leaf sheath was significantly and positively associated with increased grain yield, grain weight and grain weight per spike. Moreover, most Chuanmai 42-derived cultivars have inherited the hairy leaf sheath character. These findings suggest that the hairy leaf sheath gene in Chuanmai 42 can be applied in marker-assisted selection (MAS) as a morphologically selectable marker in breeding for high yield.

Specificity of a Rust Resistance Suppressor on 7DL in the Spring Wheat Cultivar Canthatch.

The spring wheat 'Canthatch' has been shown to suppress stem rust resistance genes in the background due to the presence of a suppressor gene located on the long arm of chromosome 7D. However, it is unclear whether the suppressor also suppresses resistance genes against leaf rust and stripe rust. In this study, we investigated the specificity of the resistance suppression. To determine whether the suppression is genome origin specific, chromosome location specific, or rust species or race specific, we introduced 11 known rust resistance genes into the Canthatch background, including resistance to leaf, stripe, or stem rusts, originating from A, B, or D genomes and located on different chromosome homologous groups. F1 plants of each cross were tested with the corresponding rust race, and the infection types were scored and compared with the parents. Our results show that the Canthatch 7DL suppressor only suppressed stem rust resistance genes derived from either the A or B genome, and the pattern of the suppression is gene specific and independent of chromosomal location.

Characteristics of alpha-amylase isozymes in cytologenetically different wheat cultivars

The isoenzyme composition of alpha-amylase is studied by polyacrylamide gel electrophoresis in Tris-glycine (pH 8.3) system in wheat cultivars with different genome composition. We show that durum wheat (Triticum durum, 2n=4x=28, BBAA) lacks the isoenzymes encoded by 6D and 7D chromosomes that are present in common wheat zymograms (Triticum aestivum, 2n=6x=42, BBAADD). A similar pattern is observed in a synthetic allohexaploid carrying the BBAA genomes of wheat and the HchHch genome of barley (Hordeum chilense). Our method of electrophoresis fails to reveal additional variants of alpha-amylase encoded by the barley genome, although C-banding analysis confirms the genomic structure BBAAHChHCh of this allopolyploid. The electrophoretic spectrum of the spring common wheat cultivar Dobrynya with the wheat-Agropyron translocation 7DL-7AiL contains all of the alpha-amylase isoenzymes typical for common wheat (2n=6x=42, BBAADD) except for the zymotype encoded by the long arm of chromosome 7D. This observation confirms the results of cytogenetic analysis that identified a 7DL-7AiL translocation in this cultivar. No additional alpha-amylase isoenzymes encoded by Agropyron chromosome have been observed. Our data indicate that analysis of wheat-alien hybrids or introgressive forms should be carried out using a complex of different methods.

QTL conferring fusarium crown rot resistance in the elite bread wheat variety EGA Wylie.

Fusarium crown rot (FCR) is one of the most damaging cereal diseases in semi-arid regions worldwide. The genetics of FCR resistance in the bread wheat (Triticum eastivum L.) variety EGA Wylie, the most resistant commercial variety available, was studied by QTL mapping. Three populations of recombinant inbred lines were developed with this elite variety as the resistant parent. Four QTL conferring FCR resistance were detected and resistance alleles of all of them were derived from the resistant parent EGA Wylie. One of these loci was located on the short arm of chromosome 5D (designated as Qcrs.cpi-5D). This QTL explains up to 31.1% of the phenotypic variance with an LOD value of 9.6. The second locus was located on the long arm of chromosome 2D (designated as Qcrs.cpi-2D) and explained up to 20.2% of the phenotypic variance with an LOD value of 4.5. Significant effects of both Qcrs.cpi-5D and Qcrs.cpi-2D were detected in each of the three populations assessed. Another two QTL (designated as Qcrs.cpi-4B.1 and Qcrs.cpi-4B.2, respectively) were located on the short arm of chromosome 4B. These two QTL explained up to 16.9% and 18.8% of phenotypic variance, respectively. However, significant effects of Qcrs.cpi-4B.1 and Qcrs.cpi-4B.2 were not detected when the effects of plant height was accounted for by covariance analysis. The elite characteristics of this commercial variety should facilitate the incorporation of the resistance loci it contains into breeding programs.

Introgression of useful genes from Thinopyrum intermedium to wheat for improvement of bread‐making quality

AbstractTo study the influence of genes from Thinopyrum intermedium on traits affecting the bread‐making quality of wheat, two derivatives from a putative disomic addition line in cultivar ‘Vilmorin 27’ were used in cytological, biochemical and molecular characterization. Cytological analysis suggested that one of the derivatives (Line‐1) had a terminal deletion involving the long arm of chromosome 1D (2n = 42, Del‐1DL”), and the other (Line‐2) was a conventional addition line, but also carried the same deletion on chromosome 1D (2n = 44, Thi”+Del‐1DL”). Amplification and sequencing of high‐molecular‐weight glutenin subunit (HMW‐GS) genes coded by the Th. intermedium chromosome in Line‐2 indicated the presence of one x‐type with an extra cysteine and four (rather than one) unique y‐type genes. Rheological studies of Line‐1 showed significantly lower dough strength compared to ‘Vilmorin 27’, confirming the recognized role of Glu‐1D coded HMW‐GSs. Line‐2 showed significantly higher dough strength compared to the background cultivar, indicating a significant potential of Th. intermedium for improvement of bread‐making quality in wheat.

Genetic analysis and molecular mapping of crown rust resistance in common wheat

This is the first report on genetic analysis and genome mapping of major dominant genes for near non-host resistance to barley crown rust ( Puccinia coronata var. hordei ) in common wheat. Barley crown rust, caused by Puccinia coronata var. hordei, primarily occurs on barley (Hordeum vulgare L.) in the Great Plain regions of the United States. However, a few genotypes of common wheat (Triticum aestivum L.) were susceptible to this pathogen among 750 wheat accessions evaluated. To investigate the genetics of crown rust resistance in wheat, a susceptible winter wheat accession PI 350005 was used in crosses with two resistant wheat varieties, Chinese Spring and Chris. Analysis of F1 plants and F2 populations from these two crosses indicated that crown rust resistance is controlled by one and two dominant genes in Chris and Chinese Spring, respectively. To determine the chromosome location of the resistance gene Cr1 in Chris, a set of 21 monosomic lines derived from Chris was used as female parents to cross with a susceptible spring type selection (SSTS35) derived from the PI 350005/Chris cross. Monosomic analysis indicated that Cr1 is located on chromosome 5D in Chris and one of the crown rust resistance genes is located on chromosome 2D in Chinese Spring. The other gene in Chinese Spring is not on 5D and thus is different from Cr1. Molecular linkage analysis and QTL mapping using a population of 136 doubled haploid lines derived from Chris/PI 350005 further positioned Cr1 between SSR markers Xwmc41-2 and Xgdm63 located on the long arm of chromosome 5D. Our study suggests that near non-host resistance to crown rust in these different common wheat genotypes is simply inherited.

Genetics and Molecular Mapping of a High-Temperature Resistance Gene to Stripe Rust in Seeding-Stage in Winter Wheat Cultivar Lantian 1

Stripe rust, caused by Puccinia striiformis Westend. f. sp. tritici (Pst), is a severe foliar disease of common wheat (Triticum aestivum L.) in the world. Resistance is the best approach to control the disease. The winter wheat cultivar Lantian 1 has high-temperature resistance to stripe rust. To determing the gene(s) for the stripe rust resistance, Lantian 1 was crossed with Mingxian 169 (M169). Seedlings of the parents, and F1, F2 and F2-3 progenies were tested with races CYR32 of Pst under controlled greenhouse conditions. Lantian 1 has a single partially dominant gene conferred resistance to race CYR32, designated as YrLT1. Simple sequence repeat (SSR) techniques were used to identify molecular markers linked to YrLT1. A linkage group of five SSR markers was constructed for YrLT1 using 166 F2 plants. Based on the SSR marker consensus map and the position on wheat chromosome, the resistance gene was assigned on chromosome 2DL. Amplification of a set of nulli-tetrasomic Chinese Spring lines with SSR marker Xwmc797 confirmed that the resistance gene was located on the long arm of chromosome 2D. Because of its chromosomal location and the high-temperature resistance, this gene is different from previously described genes. The molecular map spanned 29.9 cM, and the genetic distance of two close markers Xbarc228 and Xcfd16 to resistance gene locus was 4.0 and 5.7 cM, respectively. The polymorphism rates of the flanking markers in 46 wheat lines were 2.1 and 2.1%, respectively; and the two markers in combination could distinguish the alleles at the resistance locus in 97.9% of tested genotypes. This new gene and flanking markers should be useful in developing wheat cultivars with high level and possible durable resistance to stripe rust.

Development of a multiple bulked segregant analysis (MBSA) method used to locate a new stem rust resistance gene (Sr54) in the winter wheat cultivar Norin 40

An important aspect of studying putative new genes in wheat is determining their position on the wheat genetic map. The primary difficulty in mapping genes is determining which chromosome carries the gene of interest. Several approaches have been developed to address this problem, each with advantages and disadvantages. Here we describe a new approach called multiple bulked segregant analysis (MBSA). A set of 423 simple sequence repeat (SSR) markers were selected based on profile simplicity, frequency of polymorphism, and distribution across the wheat genome. SSR primers were preloaded in 384-well PCR plates with each primer occupying 16 wells. In practice, 14 wells are reserved for "mini-bulks" that are equivalent to four gametes (e.g. two F(2) individuals) comprised of individuals from a segregated population that have a known homozygous genotype for the gene of interest. The remaining two wells are reserved for the parents of the population. Each well containing a mini-bulk can have one of three allele compositions for each SSR: only the allele from one parent, only the allele from the other parent, or both alleles. Simulation experiments were performed to determine the pattern of mini-bulk allele composition that would indicate putative linkage between the SSR in question and the gene of interest. As a test case, MBSA was employed to locate an unidentified stem rust resistance (Sr) gene in the winter wheat cultivar Norin 40. A doubled haploid (DH) population (n = 267) was produced from hybrids of the cross LMPG-6S/Norin 40. The DH population segregated for a single gene (χ (1:1) (2) = 0.093, p = 0.76) for resistance to Puccinia graminis f.sp. tritici race LCBN. Four resistant DH lines were included in each of the 14 mini-bulks for screening. The Sr gene was successfully located to the long arm of chromosome 2D using MBSA. Further mapping confirmed the chromosome location and revealed that the Sr gene was located in a linkage block that may represent an alien translocation. The new Sr gene was designated as Sr54.

Impact of Ty3/Gypsy group retrotransposon Lila on the D-Genome specificity of common wheat Triticum aestivum L.

An analysis of the primary structure of BAC clone 112D20 T. aestivum, that contains D-genome specific Ty3-Gypsy-retrotransposon Lila is presented. PCR analysis of nulli-tetrasomic and deletion lines of T. aestivum allowed to localize this BAC clone in the distal region of the long arm of chromosome 5D. Characteristic feature of BAC clone 112D20 is a high concentration of Ty3-Gypsy-retrotransposons (61.7%), and low content of the genes (1.2%). Only a single open reading frame was revealed homologous to an unknown gene of Ae. tauschii. Specific to the D-genome Ty3-Gypsy-retrotransposon Lila in the BAC clone 112D20 is 14 kb in length and contains unequal in size long terminal repeats. The data of in situ hybridization and PCR analysis of different Triticeae species suggest that this retroelement was amplified within the ancestral species of Ae. tauschii, the donor D-genome. The suggested time of amplification based on estimation of insertion time of Lila 112D20 is 1.7 million years, which corresponds to the formation of the first allopolyploid forms of wheat. Based on comparison with the previously obtained data, it is concluded that the amplification of retroelements specific to each genome of wheat took place during formation of the diploid progenitors of these genomes.

Cytogenetic comparison of N-genome Aegilops L. Species

Differential C-banding and in situ hybridization were employed in a cytogenetic comparison of thee N-genome Aegilops species: diploid Ae. uniaristata, tetraploid Ae. ventricosa, and hexaploid Ae. recta. The formation of Ae. recta was shown to involve only minor functional modifications of the parental genomes, while intraspecific divergence was accompanied by large genome rearrangements, namely, translocations involving the total chromosome arms of all of the three genomes. The formation of tetraploid Ae. ventricosa involved substantial structural chromosome rearrangements, including a partial deletion of the short arm of chromosome 5D, including the nucleolus-organizing region; a redistribution of C bands on chromosomes of the D and N genomes along with a reduction of the heterochromatin content; and a considerable decrease in the hybridization intensity of the pAs1 repeat. Chromosomes of the Ae. ventricosa D genome were more similar to chromosomes of the Ae. crassa D1 genome than to Ae. tauschii chromosomes.

A conserved locus conditioning Soil-borne wheat mosaic virus resistance on the long arm of chromosome 5D in common wheat

Soil-borne wheat mosaic virus (SBWMV) is considered to be one of the most important diseases in winter wheat regions of the central and southeastern United States. Utilization of resistant cultivars is the most efficient and environmentally friendly means of control. To identify potential quantitative trait loci (QTL) or effective gene(s) for SBWMV resistance, two independent recombinant inbred line populations, Pioneer 26R61/AGS 2000 (PR61/A2000, 178 lines) and AGS 2020/LA 95135 (A2020/LA, 130 lines), were developed. Pioneer 26R61 and AGS 2020 were resistant to SBWMV, and AGS 2000 and LA 95135 were susceptible. Based on the whole genome genotyping for the PR61/A2000 population and targeted mapping of chromosome 5D for the A2020/LA, the same major QTL QSbm.uga-5DL was identified in all environments with highly significant LOD values, explaining up to 62 and 65 % of the total phenotypic variation in the PR61/A2000 and A2020/LA populations, respectively. The location of the resistance QTL coincided with previously published SBCMV resistance genes Sbm1, Sbm Claire and Sbm Tremie on the long arm of chromosome 5D. A conserved locus was therefore proposed for conditioning SBWMV/SBCMV resistance in common wheat. Validation of the QTL using the flanking markers Xbarc177 and Xbarc161 in three cultivars and three elite lines with Pioneer 26R61 in their pedigrees indicated that the markers were suitable for marker-assisted selection.

Genetic mapping of new seed-expressed polyphenol oxidase genes in wheat (Triticum aestivum L.)

Polyphenol oxidase (PPO) enzymatic activity is a major cause in time-dependent discoloration in wheat dough products. The PPO-A1 and PPO-D1 genes have been shown to contribute to wheat kernel PPO activity. Recently a novel PPO gene family consisting of the PPO-A2, PPO-B2, and PPO-D2 genes has been identified and shown to be expressed in wheat kernels. In this study, the sequences of these five kernel PPO genes were determined for the spring wheat cultivars Louise and Penawawa. The two cultivars were found to be polymorphic at each of the PPO loci. Three novel alleles were isolated from Louise. The Louise X Penawawa mapping population was used to genetically map all five PPO genes. All map to the long arm of homeologous group 2 chromosomes. PPO-A2 was found to be located 8.9 cM proximal to PPO-A1 on the long arm of chromosome 2A. Similarly, PPO-D1 and PPO-D2 were separated by 10.7 cM on the long arm of chromosome 2D. PPO-B2 mapped to the long arm of chromosome 2B and was the site of a novel QTL for polyphenol oxidase activity. Five other PPO QTL were identified in this study. One QTL corresponds to the previously described PPO-D1 locus, one QTL corresponds to the PPO-D2 locus, whereas the remaining three are located on chromosome 2B.

The β-amylase polymorphism of winter common wheat grains

The polymorphism of winter common wheat with respect to β-amylase isoenzymes has been analyzed using electrophoresis in polyacrylamide gel (PAAG) buffered with a Tris-glycine system (pH 8.3). Seven β-amylase isoenzymes have been found in wheat cultivars and the breeding stock. Isoenzymes A, B, and C are the most frequent in Russian and Ukrainian cultivars (51.7 4.7, 30.7 3.8, and 11.9 2.5%, respectively). Two alleles of the β-Amy-D1 locus of the long arm of chromosome 4D have been identified. The substrate-enzyme affine effect can be used to locate the zones of activity of this enzyme by means of staining for proteins. It has been determined that β-amylase zymotypes may play a role in the aggregating capacity of the grain protein complex via the formation of S-S bonds.

Mapping the Bod2 gene associated with boron efficiency in wheat

Genotypic variation for response to boron (B) deficiency in wheat (Triticum aestivum L.) was determined as grain set index (GSI, %) and found to be controlled by two major genes, Bod1 and Bod2. Breeding for B efficiency may be enhanced by molecular markers associated with quantitative trait loci (QTL) for B efficiency. Two mapping populations, (Bonza SW 41) BC2 and Fang 60 Bonza, were made from Bonza (B inefficient), SW 41 (B moderately inefficient), and Fang 60 (B efficient) parents. Leaf samples from F2 plants from each cross were used for DNA analysis. GSI was measured in F2-derived F3 families. Seven hundred and eighty-seven simple sequence repeat (SSR) markers were used. Bulked segregant analysis and QTL analysis were performed to identify the chromosomal location for B efficiency. One QTL for B efficiency was identified and mapped in (Bonza SW 41) BC2F3, and was found to be flanked by two SSR markers, gwm192, and gwm165. This QTL is located on the long arm of chromosome 4D between gwm165 and gwm192. This QTL region corresponded for 21% of the variation in GSI, suggesting that the chromosome segment of SW 41 parent containing the Bod2 locus was inherited by the progenies and that is located on 4D. Additional markers and further examination are required to locate Bod1, the other B efficient gene. Linked markers will enable applications of marker-assisted selection for B-efficient genotypes in wheat.

Association Study of Resistance to Soilborne wheat mosaic virus in U.S. Winter Wheat

Soilborne wheat mosaic virus (SBWMV) is one of the most important winter wheat pathogens worldwide. To identify genes for resistance to the virus in U.S. winter wheat, association study was conducted using a selected panel of 205 elite experimental lines and cultivars from U.S. hard and soft winter wheat breeding programs. Virus symptoms were evaluated twice in virus-infected fields for the panel at Manhattan, KS in spring 2010 and 2011 and for a subpanel of 137 hard winter wheat accessions at Stillwater, OK in spring 2008. At the two locations, 69.8 and 79.5% of cultivars were resistant or moderately resistant to the disease, respectively. After 282 simple-sequence repeat markers covering all wheat chromosome arms were scanned for association in the panel, marker Xgwm469 on the long arm of chromosome 5D (5DL) showed a significant association with the disease rating. Three alleles (Xgwm469-165bp, -167bp, and -169bp) were associated with resistance and the null allele was associated with susceptibility. Correlations between the marker and the disease rating were highly significant (0.80 in Manhattan at P < 0.0001 and 0.63 in Stillwater at P < 0.0001). The alleles Xgwm469-165bp and Xgwm469-169bp were present mainly in the hard winter wheat group, whereas allele Xgwm469-167bp was predominant in the soft winter wheat. The 169 bp allele can be traced back to 'Newton', and the 165 bp allele to Aegilops tauschii. In addition, a novel locus on the short arm of chromosome 4D (4DS) was also identified to associate with the disease rating. Marker Xgwm469-5DL is closely linked to SBWMV resistance and highly polymorphic across the winter wheat accessions sampled in the study and, thus, should be useful in marker-assisted selection in U.S. winter wheat.