To determine the ecological effects of atmospheric wet deposition of dissolved nutrients on the coastal waters around the Yangma Island, rain and snow samples were collected and analyzed at a shore-based site for one year. The wet deposition fluxes of dissolved inorganic nitrogen and phosphorus (DIN and DIP) and dissolved organic nitrogen and phosphorus were 69.2, 0.136, 13.3 and 0.143 mmol m −2 a −1 , respectively. In summer, the new production fueled by wet deposition accounted for 19.3 % of that in seawater and 16.4 % of the amount of particulate organic carbon ingested by the scallops cultivated in the study area, indicating the potential contribution of wet deposition to fishery resources. Meanwhile, precipitation increased the seasonal average DIN/DIP ratios in surface seawater by 17.7 %, 16.3 %, 23.4 % and 6.5 % in spring, summer, autumn and winter, respectively, which could change the composition of ecological community and cause obvious negative impact on the ecosystem and mariculture. • The annual wet deposition flux of DIN contributed to 34.4 % of the DIN load. • Wet deposition may exacerbate the unbalance of DIN and DIP in coastal waters. • Wet deposition could support 19.3 % of the new production of the study area in summer. • Wet deposition could serve as an important source for fishery resources in summer. • Summer deoxygenation was partly related to excessive N input by wet deposition.