Bio-fertilizers are the most important and effective method used to reduce the quantities of chemical fertilizers consumed and reduce dependence on them in agricultural production to avoid their harmful effects on the environment and public health as well as reduce the cost of agricultural production in light of increasing pollution and under adverse conditions for production and climate change. A bio-fertilizer depends primarily on the use of beneficial microorganisms such as arbuscular mycorrhizal fungi (AMF) to improve the uptake of nutrients, improve plant growth, productivity, and grain yield. Crop production faces many challenges, and drought is one of the majority of the significant factors limiting crop production worldwide, especially in semi-arid regions. The objective of this study was to evaluate the effects of AMF and phosphate solubilizing bacteria (PSB), plus three rates of the recommended dose of phosphorus (RDP) fertilizer on yield, yield components, and nutrients uptake, in addition to evaluating the beneficial effects of these combinations to develop Phosphorus (P) management under three levels of irrigation water, i.e., three irrigations (normal or well-watered), two irrigations (moderate drought), and one irrigation (severe drought) on barley (Hordeum vulgare L.). The results showed that the treatment with AMF bio-fertilizer yielded the highest values of plant height, spike length, spike weight, number of grains/spike, 1000-grain weight, grain yield, straw yield, biological yield, and harvest index. Moreover, the grain and straw uptake of nitrogen (N), P, and potassium (K) (kg ha−1) in the two seasons under the three levels of irrigation, respectively, were superior followed by the inoculation by PSB. While the treatment without bio-fertilizer yielded the lowest values of these traits of barley, the treatment with bio-fertilizer yielded the increased percentage of the grain yield by 17.27%, 17.33% with applying AMF, and 10.31%, 10.40% with treatment by PSB. Treatment with AMF or PSB (Phosphorien), plus rates of phosphorus fertilizer under conditions of irrigation water shortage, whether irrigation was performed once or twice, led to an increase in grain yield and other characteristics compared to the same fertilization rates without inoculation. The results of this study showed that the use of bio-fertilizers led to an increase in plant tolerance to drought stress, and this was demonstrated by an increase in various traits with the use of treatments that include bio-fertilizers. Therefore, it is suggested to inoculate the seeds with AMF or PSB plus adding phosphate fertilizers at the recommended dose under drought conditions.