Metamorphic rocks of the Central Indonesian Accretionary Collision Complex are exposed in widely scattered occurrences on the islands of Java, Sulawesi, and Kalimantan. Their relationship to one or more subduction zones is controversial which can partly be explained by insufficient geochronological investigation. Using Rb–Sr geochronology we have dated various schists from the Meratus Complex, South Kalimantan, and the Luk Ulo Complex, Central Java. The Meratus schists first experienced high-pressure/low-temperature (HP/LT) metamorphism and were later overprinted at medium pressure conditions. Due to the rarity and poor preservation of such rocks, isotopic ages for well-preserved HP/LT rocks could not be determined yet. Previously obtained K–Ar white mica dates (180–160 Ma) were attributed to the HP/LT event, however, this was speculative as the dated rocks only record greenschist- to amphibolite-facies P–T conditions. A newly dated partially overprinted but still glaucophane-rich sample yielded a well-defined Rb–Sr isochron age (phengite, epidote) of 112.9 ± 0.7 Ma (all uncertainties on Rb–Sr dates indicate 95% confidence level), providing a minimum age for the HP/LT stage. Internal mineral isochrons of more severely overprinted samples show poor linear fits between mica and associated phases indicating incomplete resetting of the Rb–Sr isotope system during the later lower pressure metamorphic event. Isochrons that are derived only from different grain-size fractions of white mica indicate dates between 115 and 110 Ma (± 3 to 6 Ma). In contrast to previous interpretations that linked high-grade rocks of the Meratus Complex to collision-induced crustal thickening it is here considered more likely that these rocks either represent exotic fragments from NW Australia or the metamorphic sole of the Meratus ophiolite. Differences in temperature estimates for HP/LT rocks from the Luk Ulo Complex probably indicate erroneous textural interpretation of equilibrium mineral assemblages and/or compositions. Neither petrological analysis nor geochronological dating has yet unambiguously confirmed different P–T–t paths for eclogites with and without tourmaline (Trm) from the Luk Ulo area. The newly dated Trm-bearing epidote blueschist from the serpentinitic Muncar River mélange yielded a well-defined Rb–Sr isochron of 119.0 ± 0.7 Ma (phengite, epidote, tourmaline) that perfectly matches with existing K–Ar and Rb–Sr data for Trm-free HP/LT rocks. Two samples of the more widespread garnet-phengite schists of the Luk Ulo area yielded Rb–Sr ages (phengite, feldspar) of 118.0 ± 0.8 Ma and 114.7 ± 1.3 Ma. A meter-sized epidote amphibolite block included in these clastic metasedimentary rocks provided a Rb–Sr isochron age of 116.8 ± 0.7 Ma (phengite, epidote, whole rock). These ages match existing K–Ar data for severely overprinted rocks from the Luk Ulo area and further corroborate the geological significance of Early Cretaceous metamorphism in Central Java. Petrological and geochronological data of the Meratus and Luk Ulo complexes are in accordance with a model suggesting that both occurrences belong to the same Cretaceous subduction system. The existence of an additional Cretaceous suture zone cutting through Sulawesi is considered likely.