Aquatic Microbiota Research Articles

Temporal dynamics of aquatic microbiota and their correlation with environmental factors during larviculture of the shrimp Litopenaeus vannamei

In-depth knowledge of aquatic microbiota succession and their correlation with water variables during shrimp larviculture plays a pivotal role in larval health. In this study, rearing water from 12 Litopenaeus vannamei hatchery ponds, named CX1-CX12, was surveyed to characterize the microbiota, environmental factors and presumptive vibrio count (PVC) across the following larval stages: nauplii 5 (N5), zoea 1–3 (Z1, Z2, Z3), mysis 1–3 (M1, M2, M3), and postlarvae 2 (PL2). The results showed that PVC increased, in a range of 7.1 × 102–2.3 × 104 cfu ml−1, in healthy ponds, which correlated positively with total ammonia nitrogen (TAN), dissolved inorganic phosphorus (DIP), dissolved organic carbon (DOC) and temperature, and negatively with dissolved oxygen (DO) (P < .05). There was a sudden rise in PVC to 8.9 × 104 cfu ml−1 in pond CX6 at M1, with a mass larval mortality at M2, which led to only 10% survival for CX6 compared to 70–80% in healthy ponds at PL2 stage. A detrended correspondence analysis revealed that the microbiota was stage-specific from stages N5 to M1, and from M1 onwards, the bacterial communities at various stages converged but were increasingly heterogeneous among parallel ponds. For healthy ponds, the bacterial alpha diversity declined from N5 to Z3, and then rose until PL2. The water variables including TAN, pH, temperature, DO, and DIP had the great influences on variation of the microbiota, followed by salinity and DOC (P < .001). Relative to the healthy ponds, the microbiota structure of pond CX6 deviated from Z3 onwards. A co-occurrence network analysis further confirmed the simple and dispersive interactions of bacterial taxa and water variables in pond CX6. Therefore, the microbiota of rearing water was highly dynamic with low diversity during Z3 to M2, which may result in disease and larval mortality if the dysbacteriosis is coupled with an abrupt change of specific populations. Thus, great attention should not only be focused on opportunistic pathogens and water quality, but also on succession and deviation of the entire microbial community during shrimp larviculture to prevent the outbreak of disease.

DNA metabarcoding reveals the responses of prokaryotes and eukaryotes microbiota to warming: Are the patterns similar between taxonomic and trophic groups?

Abstract The aquatic microbiota is involved in crucial ecosystem functions. Thus, investigating the effects of global warming on these organisms is highly relevant, especially given the numerous climatic changes expected by the end of the century. In this study, we used an experimental approach and high-throughput sequencing to evaluate the shortterm effect of warming predicted by different future scenarios in the composition of the planktonic freshwater bacteria and microeukaryotes, and to verify if the same effects occur for each trophic level separately (autotrophic, heterotrophic and mixotrophic). Our experiment demonstrated that the composition for eukaryotes and prokaryotes based on DNA metabarcoding is affected by the increase in temperature and these have a similar pattern of response to warming. This highlights the temperature importance in structuring the communities of different groups. Modifications in the communities were observed through the substitution of specific taxa, which occurred mainly in warmer levels. Changes in community composition were also identified when trophic levels were assessed separately. Mixotrophic eukaryotes organisms are more sensitive to warming, modifying the patterns of composition with an increase in temperature of 2 °C. Microeukaryotes and heterotrophic bacteria were more resistant, with alterations in the communities composition visualized only in higher warming levels. The composition of autotrophic organisms was not affected by the increase in water temperature in any of the biological classifications evaluated, although the richness of eukaryotic autotrophic has decreased with warming. Our results contribute to predict how different biological levels and trophic groups of the aquatic microbiota respond to global warming. This approach is relevant because warming leads to changes in community composition and affects ecosystem processes essentials to the aquatic environment.

Resistome, Mobilome and Virulome Analysis of Shewanella algae and Vibrio spp. Strains Isolated in Italian Aquaculture Centers.

Antimicrobial resistance is a major public health concern restricted not only to healthcare settings but also to veterinary and environmental ones. In this study, we analyzed, by whole genome sequencing (WGS) the resistome, mobilome and virulome of 12 multidrug-resistant (MDR) marine strains belonging to Shewanellaceae and Vibrionaceae families collected at aquaculture centers in Italy. The results evidenced the presence of several resistance mechanisms including enzyme and efflux pump systems conferring resistance to beta-lactams, quinolones, tetracyclines, macrolides, polymyxins, chloramphenicol, fosfomycin, erythromycin, detergents and heavy metals. Mobilome analysis did not find circular elements but class I integrons, integrative and conjugative element (ICE) associated modules, prophages and different insertion sequence (IS) family transposases. These mobile genetic elements (MGEs) are usually present in other aquatic bacteria but also in Enterobacteriaceae suggesting their transferability among autochthonous and allochthonous bacteria of the resilient microbiota. Regarding the presence of virulence factors, hemolytic activity was detected both in the Shewanella algae and in Vibrio spp. strains. To conclude, these data indicate the role as a reservoir of resistance and virulence genes in the environment of the aquatic microbiota present in the examined Italian fish farms that potentially might be transferred to bacteria of medical interest.

Faecal pollution affects abundance and diversity of aquatic microbial community in anthropo-zoogenically influenced lotic ecosystems

The aquatic microbiota is known to be an important factor in the sustainability of the natural water ecosystems. However, the microbial community also might include pathogens, which result in very serious waterborne diseases in humans and animals. Faecal pollution is the major cause of these diseases. Therefore, it is of immense importance to assess the potential impact of faecal pollution, originating from both anthropogenic and zoogenic sources, on the profile of microbial communities in natural water environments. To this end, the microbial taxonomic diversity of lotic ecosystems in different regions of Norway, representing urban and rural areas, exposed to various levels of faecal pollution, was investigated over the course of a 1-year period. The highest microbial diversity was found in rural water that was the least faecally polluted, while the lowest was found in urban water with the highest faecal contamination. The overall diversity of the aquatic microbial community was significantly reduced in severely polluted water. In addition, the community compositions diverged between waters where the dominant pollution sources were of anthropogenic or zoogenic origin. The results provide new insight into the understanding of how faecal water contamination, specifically that of different origins, influences the microbial diversity of natural waters.

Impacts of florfenicol on the microbiota landscape and resistome as revealed by metagenomic analysis

BackgroundDrug-resistant fish pathogens can cause significant economic loss to fish farmers. Since 2012, florfenicol has become an approved drug for treating both septicemia and columnaris diseases in freshwater fish. Due to the limited drug options available for aquaculture, the impact of the therapeutical florfenicol treatment on the microbiota landscape as well as the resistome present in the aquaculture farm environment needs to be evaluated.ResultsTime-series metagenomic analyses were conducted to the aquatic microbiota present in the tank-based catfish production systems, in which catfish received standard therapeutic 10-day florfenicol treatment following the federal veterinary regulations. Results showed that the florfenicol treatment shifted the structure of the microbiota and reduced the biodiversity of it by acting as a strong stressor. Planctomycetes, Chloroflexi, and 13 other phyla were susceptible to the florfenicol treatment and their abundance was inhibited by the treatment. In contrast, the abundance of several bacteria belonging to the Proteobacteria, Bacteroidetes, Actinobacteria, and Verrucomicrobia phyla increased. These bacteria with increased abundance either harbor florfenicol-resistant genes (FRGs) or had beneficial mutations. The florfenicol treatment promoted the proliferation of florfenicol-resistant genes. The copy number of phenicol-specific resistance genes as well as multiple classes of antibiotic-resistant genes (ARGs) exhibited strong correlations across different genetic exchange communities (p < 0.05), indicating the horizontal transfer of florfenicol-resistant genes among these bacterial species or genera. Florfenicol treatment also induced mutation-driven resistance. Significant changes in single-nucleotide polymorphism (SNP) allele frequencies were observed in membrane transporters, genes involved in recombination, and in genes with primary functions of a resistance phenotype.ConclusionsThe therapeutical level of florfenicol treatment significantly altered the microbiome and resistome present in catfish tanks. Both intra-population and inter-population horizontal ARG transfer was observed, with the intra-population transfer being more common. The oxazolidinone/phenicol-resistant gene optrA was the most prevalent transferred ARG. In addition to horizontal gene transfer, bacteria could also acquire florfenicol resistance by regulating the innate efflux systems via mutations. The observations made by this study are of great importance for guiding the strategic use of florfenicol, thus preventing the formation, persistence, and spreading of florfenicol-resistant bacteria and resistance genes in aquaculture.

Spectral Deconvolution for Dimension Reduction and Differentiation of Seagrasses: Case Study of Gulf St. Vincent, South Australia

Seagrasses are a vulnerable and declining coastal habitat, which provide shelter and substrate for aquatic microbiota, invertebrates, and fishes. More accurate mapping of seagrasses is imperative for their sustainability but is hindered by the lack of data on reflectance spectra representing the optical signatures of individual species. Objectives of this study are: (1) To determine distinct characteristics of spectral profiles for sand versus three temperate seagrasses (Posidonia, Amphibolis, and Heterozostera); (2) to evaluate the most efficient derivative analysis method of spectral reflectance profiles for determining benthic types; and to assess the influences of (3) site location and (4) the water column on spectral responses. Results show that 566:689 and 566:600 bandwidth ratios are useful in separating seagrasses from sand and from detritus and algae, respectively; first-derivative reflectance spectra generally is the most efficient method, especially with deconvolution analyses further helping to reveal and isolate 11 key wavelength dimensions; and differences between sites and water column composition, which can include suspended particulate matter, both have no effect on endmembers. These findings helped develop a spectral reflectance library that can be used as an endmember reference for remote sensing, thereby providing continued monitoring, assessment, and management of seagrasses.

Cetylpyridinium bromide assisted micellar-enhanced ultrafiltration for treating enrofloxacin-laden water

The presence of a fluoroquinolone base veterinary antibacterial drug enrofloxacin in aqueous media poses a major threat due to its ecotoxicity on aquatic microbiota. Hence, for the first time, an attempt was made to remove enrofloxacin (ENX) from its aqueous solution by employing micellar-enhanced ultrafiltration (MEUF) where cetylpyridinium bromide (CPB), a cationic surfactant was used for micellization. Response surface methodology (RSM) with central composite design (CCD) approach was applied to design the experiment, and to optimize the process parameters, namely, ENX concentration (3–15 mg/L), transmembrane pressure (2–6 kgf/cm2), recirculation flow rate (5.5–7.5 L/min) and CPB concentration (1.4–4.2 mM). The objective of this study was to maximize the permeate flux and rejection coefficient and to find out the optimal process condition for the removal of enrofloxacin from aqueous solution. Though maximum 68.23 L/m2 h of permeate flux and 94.20% of rejection coefficient were achieved at different process conditions, the optimization study reveals that the predicted optimal values of permeate flux and rejection coefficient are 67.53 L/m2 h and 89.67% respectively. Modelling was also carried out with the aid of artificial neural network (ANN) to validate the prediction of RSM. The predictability of the model by RSM and ANN was compared statistically by evaluating root-mean-square error (RMSE), absolute average deviation (AAD) and mean absolute error (MAE), where ANN exhibited better predictability. The following set of parameters was proposed for industrial scale up: ENX concentration of 8.4 mg/L, TMP of 5 kgf/cm2, recirculation flow rate of 6 L/min and CPB concentration of 2.1 mM.

Diversity patterns of planktonic microeukaryote communities in tropical floodplain lakes based on 18S rDNA gene sequences

AbstractThe aquatic microbiota plays key roles in ecosystem processes; however, the mechanisms that influence their biogeographic patterns are not yet fully understood. Using high-throughput 18S rDNA gene sequencing, we investigated the composition of planktonic microeukaryotes (organisms sampled using a 68-μm plankton net) in 27 floodplain lakes of the Araguaia River, central Brazil and explored the influence of environmental and spatial factors for communities considering taxonomic and trophic groups. Of the 807 operational taxonomic units (OTUs) observed, Chlorophyta and Charophyta were the groups with greater abundance. Beta diversity was high, and the similarity of communities decreased as the geographic distance increased. We found a shared explanation between environmental and spatial predictors for total and autotrophic microbiota. Environmental variables influence only mixotrophic microbiota. These results suggest an OTU turnover along the floodplain and a spatially structured composition. This spatial pattern can be derived from the association with extrinsic factors, such as spatially structured environmental variables, that generate spatial dependence. However, the relationship between the composition of microbiota and environmental conditions is still unclear.

Extended persistence of general and cattle-associated fecal indicators in marine and freshwater environment

Fecal contamination of recreational waters with cattle manure can pose a risk to public health due to the potential presence of various zoonotic pathogens. Fecal indicator bacteria (FIB) have a long history of use in the assessment of recreational water quality, but FIB quantification provides no information about pollution sources. Microbial source tracking (MST) markers have been developed in response to a need to identify pollution sources, yet factors that influence their decay in ambient waters are often poorly understood. We investigated the influence of water type (freshwater versus marine) and select environmental parameters (indigenous microbiota, ambient sunlight) on the decay of FIB and MST markers originating from cattle manure. Experiments were conducted in situ using a submersible aquatic mesocosm containing dialysis bags filled with a mixture of cattle manure and ambient water. Culturable FIB (E. coli, enterococci) were enumerated by membrane filtration and general fecal indicator bacteria (GenBac3, Entero1a, EC23S857) and MST markers (Rum2Bac, CowM2, CowM3) were estimated by qPCR. Water type was the most significant factor influencing decay (three-way ANOVA, p: 0.006 to <0.001), although the magnitude of the effect differed among microbial targets and over time. The presence of indigenous microbiota and exposure to sunlight were significantly correlated (three-way ANOVA, p: 0.044 to <0.001) with decay of enterococci and CowM2, while E. coli, EC23S857, Rum2Bac, and CowM3 (three-way ANOVA, p: 0.044 < 0.001) were significantly impacted by sunlight or indigenous microbiota. Results indicate extended persistence of both cultivated FIB and genetic markers in marine and freshwater water types. Findings suggest that multiple environmental stressors are important determinants of FIB and MST marker persistence, but their magnitude can vary across indicators. Selective exclusion of natural aquatic microbiota and/or sunlight typically resulted in extended survival, but the effect was minor and limited to select microbial targets.

Bacterial exposure to ZnO nanoparticles facilitates horizontal transfer of antibiotic resistance genes

Bacterial exposure to ZnO nanoparticles (nZnO) at sublethal concentrations (1 to 10mg/l) for 24h significantly increased the conjugative frequency of antibiotic resistance plasmid RP4. A 24.3-fold increase was observed in E. coli pure cultures, and an 8.3-fold increase occurred in a mixed culture of indigenous aquatic microbiota. In addition, nZnO increased by three fold the transformation efficiency of E. coli via the uptake of naked plasmid pGEX4T-1, which was confirmed by confocal fluorescence microscopy. Enhanced horizontal transfer of resistance plasmids was a nanoparticle-specific effect, since 5.3mg/l Zn2+ (representing the maximum release of Zn2+ from 10mg/l nZnO) did not enhance RP4 transfer or pGEX4T-1 uptake frequency. This phenomenon was attributed to increased bacterial cell permeability after exposure to nZnO (but not to Zn2+), which was confirmed by flow cytometry with propidium iodide staining. Overall, this study forewarns that accidental or incidental release of nZnO may facilitate environmental dissemination and propagation of antibiotic resistance genes through horizontal gene transfer.

Characterization of Legionella Species from Watersheds in British Columbia, Canada.

Legionella spp. present in some human-made water systems can cause Legionnaires' disease in susceptible individuals. Although legionellae have been isolated from the natural environment, variations in the organism's abundance over time and its relationship to aquatic microbiota are poorly understood. Here, we investigated the presence and diversity of legionellae through 16S rRNA gene amplicon and metagenomic sequencing of DNA from isolates collected from seven sites in three watersheds with varied land uses over a period of 1year. Legionella spp. were found in all watersheds and sampling sites, comprising up to 2.1% of the bacterial community composition. The relative abundance of Legionella tended to be higher in pristine sites than in sites affected by agricultural activity. The relative abundance levels of Amoebozoa, some of which are natural hosts of legionellae, were similarly higher in pristine sites. Compared to other bacterial genera detected, Legionella had both the highest richness and highest alpha diversity. Our findings indicate that a highly diverse population of legionellae may be found in a variety of natural aquatic sources. Further characterization of these diverse natural populations of Legionella will help inform prevention and control efforts aimed at reducing the risk of Legionella colonization of built environments, which could ultimately decrease the risk of human disease. IMPORTANCE Many species of Legionella can cause Legionnaires' disease, a significant cause of bacterial pneumonia. Legionella in human-made water systems such as cooling towers and building plumbing systems are the primary sources of Legionnaires' disease outbreaks. In this temporal study of natural aquatic environments, Legionella relative abundance was shown to vary in watersheds associated with different land uses. Analysis of the Legionella sequences detected at these sites revealed highly diverse populations that included potentially novel Legionella species. These findings have important implications for understanding the ecology of Legionella and control measures for this pathogen that are aimed at reducing human disease.

Effect of propanil, linuron, and dicamba on the degradation kinetics of 2,4-dichlorophenoxyacetic acid by Burkholderia sp. A study by differential analysis of 2,4-dichlorophenoxyacetic acid degradation data.

The successive application of distinct pesticides, or mixtures of them, is a frequent practice that could adversely affect the microbial species inhabiting soil and aquatic ecosystems. The ability of soil or aquatic microbiota to degrade a pesticide could be affected by the presence of another. If the degradation rate of the first compound is inhibited, its dissipation half-life in the environment could be hazardously enlarged. Few studies have been made to quantify the impact on the biodegradation rate of pesticides in soils or water by the presence of other pesticides. In this work, a method for assessing the effect of a pesticide on the biodegradation rate of another, measuring its effect on the biodegradation kinetics of a single bacterial strain is presented. The mathematical analysis is a powerful tool to study the stoichiometry and kinetics of microbial processes, which was used to evaluate independently, in detail, the effect of three pesticides (propanil, linuron, and dicamba) on the biodegradation kinetics of 2,4-dichlorophenoxyacetic acid by a strain of Burkholderia sp. It was evidenced that linuron and dicamba caused a decay of more than 40% in the top instantaneous degradation rate of 2,4-dichlorophenoxyacetic acid, while propanil showed a minimal effect.

Biodegradation and metabolic fate of levofloxacin via a freshwater green alga, Scenedesmus obliquus in synthetic saline wastewater

Levofloxacin (LEV), a fluoroquinolone antibiotic has been frequently observed in water resources imposing ecotoxicological effects on aquatic microbiota. The biodegradation and metabolic fate of LEV via a microalga, Scenedesmus obliquus in synthetic saline wastewater were investigated in this study. LEV removal (1mgL−1) by S. obliquus was relatively low in the synthetic wastewater without the addition of sodium chloride (NaCl); however, its removal increased significantly from 4.5 to 93.4% with increasing of its salinity from 0 to 171mM NaCl. Kinetic studies showed that the removal rate constant (k) increased from 0.005 to 0.289d−1 and degradation half-life decreased from 272 to 5d in the presence of NaCl (0–856mM). The removal mechanism analysis showed that the major mechanism of NaCl mediated enhancement of LEV removal was the bioaccumulation and subsequent intracellular biodegradation of LEV in microalgal cells. Six metabolites were identified via gas chromatography–mass spectrometry analysis after biodegradation of LEV. A metabolic pathway was postulated with regard to various cellular biocatalytic reactions in S. obliquus, including decarboxylation, demethylation, dehydroxylation, side chain breakdown, and ring cleavage.

Ecotoxicological effects of enrofloxacin and its removal by monoculture of microalgal species and their consortium

Enrofloxacin (ENR), a fluoroquinolone antibiotic, has gained big scientific concern due to its ecotoxicity on aquatic microbiota. The ecotoxicity and removal of ENR by five individual microalgae species and their consortium were studied to correlate the behavior and interaction of ENR in natural systems. The individual microalgal species (Scenedesmus obliquus, Chlamydomonas mexicana, Chlorella vulgaris, Ourococcus multisporus, Micractinium resseri) and their consortium could withstand high doses of ENR (≤1 mg L-1). Growth inhibition (68–81%) of the individual microalgae species and their consortium was observed in ENR (100 mg L-1) compared to control after 11 days of cultivation. The calculated 96 h EC50 of ENR for individual microalgae species and microalgae consortium was 9.6–15.0 mg ENR L−1. All the microalgae could recover from the toxicity of high concentrations of ENR during cultivation. The biochemical characteristics (total chlorophyll, carotenoid, and malondialdehyde) were significantly influenced by ENR (1–100 mg L-1) stress. The individual microalgae species and microalgae consortium removed 18–26% ENR at day 11. Although the microalgae consortium showed a higher sensitivity (with lower EC50) toward ENR than the individual microalgae species, the removal efficiency of ENR by the constructed microalgae consortium was comparable to that of the most effective microalgal species.

Microbiota Composition and Pulmonary Surfactant Protein Expression as Markers of Death by Drowning.

Pathological diagnosis of drowning remains a challenge for forensic science, because of a lack of pathognomonic findings. We analyzed microbiota and surfactant protein in the lungs for a novel diagnosis of drowning. All rats were divided into drowning, postmortem submersion, and control groups. The water, lungs, closed organs (kidney and liver), and cardiac blood in rats were assayed by targeting 16S ribosomal RNA of Miseq sequencing. Lung samples were analyzed by immunohistochemical staining for surfactant protein A. The closed organs and cardiac blood of drowned group have a lot of aquatic microbes, which have not been detected in postmortem submersion group. Furthermore, intra-alveolar granular staining of surfactant protein A (SP-A) was severely observed in the drowned group than the postmortem submersion and control groups. The findings suggested that the presence of aquatic microbiota in the closed organs and increased expression of SP-A could be markers for a diagnosis of drowning.

Global Association between Thermophilicity and Vancomycin Susceptibility in Bacteria.

Exploration of the aquatic microbiota of several circum-neutral (6.0–8.5 pH) mid-temperature (55–85°C) springs revealed rich diversities of phylogenetic relatives of mesophilic bacteria, which surpassed the diversity of the truly-thermophilic taxa. To gain insight into the potentially-thermophilic adaptations of the phylogenetic relatives of Gram-negative mesophilic bacteria detected in culture-independent investigations we attempted pure-culture isolation by supplementing the enrichment media with 50 μg ml−1 vancomycin. Surprisingly, this Gram-positive-specific antibiotic eliminated the entire culturable-diversity of chemoorganotrophic and sulfur-chemolithotrophic bacteria present in the tested hot water inocula. Moreover, it also killed all the Gram-negative hot-spring isolates that were obtained in vancomycin-free media. Concurrent literature search for the description of Gram-negative thermophilic bacteria revealed that at least 16 of them were reportedly vancomycin-susceptible. While these data suggested that vancomycin-susceptibility could be a global trait of thermophilic bacteria (irrespective of their taxonomy, biogeography and Gram-character), MALDI Mass Spectroscopy of the peptidoglycans of a few Gram-negative thermophilic bacteria revealed that tandem alanines were present in the fourth and fifth positions of their muropeptide precursors (MPPs). Subsequent phylogenetic analyses revealed a close affinity between the D-alanine-D-alanine ligases (Ddl) of taxonomically-diverse Gram-negative thermophiles and the thermostable Ddl protein of Thermotoga maritima, which is well-known for its high specificity for alanine over other amino acids. The Ddl tree further illustrated a divergence between the homologs of Gram-negative thermophiles and mesophiles, which broadly coincided with vancomycin-susceptibility and vancomycin-resistance respectively. It was thus hypothesized that thermophilic Ddls have been evolutionarily selected to favor a D-ala-D-ala bonding. However, preference for D-ala-D-ala-terminated MPPs does not singlehandedly guarantee vancomycin susceptibility of thermophilic bacteria as the large and relatively-hydrophilic vancomycin molecule has to cross the outer membrane before it can inhibit peptidoglycan biosynthesis. Literature shows that many mesophilic Gram-negative bacteria also have D-ala-D-ala-terminated MPPs, but they still remain resistant to vancomycin due to the relative impermeability of their membranes. But the global vancomycin-susceptibility phenotype of thermophilic bacteria itself testifies that the drug crosses the membrane in all these cases. As a corollary, it seems quite likely that the outer membranes of thermophilic bacteria have some yet-unknown characteristic feature(s) that invariably ensures the entry of vancomycin.

Effect of chemical stress and ultraviolet radiation in the bacterial communities of zebrafish embryos

This study aimed to assess the effect of ultraviolet radiation (UVR) and chemical stress (triclosan-TCS; potassium dichromate-PD; prochloraz-PCZ) on bacterial communities of zebrafish (Danio rerio) embryos (ZEBC). Embryos were exposed to two UVR intensities and two chemical concentrations not causing mortality or any developmental effect (equivalent to the No-Observed-Effect Concentration-NOEC; NOEC diluted by 10-NOEC/10). Effects on ZEBC were evaluated using denaturing gradient gel electrophoresis (DGGE) and interpreted considering structure, richness and diversity. ZEBC were affected by both stressors even at concentrations/doses not affecting the host-organism (survival/development). Yet, some stress-tolerant bacterial groups were revealed. The structure of the ZEBC was always affected, mainly due to xenobiotic presence. Richness and diversity decreased after exposure to NOEC of PD. Interactive effects occurred for TCS and UVR. Aquatic microbiota imbalance might have repercussions for the host/aquatic system, particularly in a realistic scenario/climate change perspective therefore, future ecotoxicological models should consider xenobiotics interactions with UVR.

Removal of Dissolved Copper and Zinc from Highway Runoff via Adsorption

AbstractDissolved copper and zinc are commonly observed in highway runoff at concentrations that have been shown to exert toxic effects on aquatic microbiota and macrobiota. Dissolved copper in particular has been shown to disrupt the olfactory nervous system of salmon species at concentrations as low as 3 μg/L. To reduce concentrations to below this threshold, treatment of highway runoff for the removal of copper and zinc is necessary. This study developed a column testing protocol that can be used to quickly and reliably evaluate adsorptive removal of dissolved heavy metals from highway runoff. The protocol is demonstrated in an evaluation of iron oxide, manganese oxide, crab shell, concrete, and bone meal media for removing dissolved copper and zinc as a function of runoff characteristics, including pH, ionic strength, alkalinity, and total organic carbon. The results indicate that iron oxide media in combination with crab shell or concrete media is the most effective adsorptive technique for the remo...

Enteric pathogen survival varies substantially in irrigation water from Belgian lettuce producers.

It is accepted that irrigation water is a potential carrier of enteric pathogens, such as Salmonella and E. coli O157:H7 and, therefore, a source for contamination of fresh produce. We tested this by comparing irrigation water samples taken from five different greenhouses in Belgium. The water samples were inoculated with four zoonotic strains, two Salmonella and two E. coli O157:H7 strains, and pathogen survival and growth in the water were monitored up till 14 days. The influence of water temperature and chemical water quality was evaluated, and the survival tests were also performed in water samples from which the resident aquatic microbiota had previously been eliminated by filter sterilization. The pathogen’s survival differed greatly in the different irrigation waters. Three water samples contained nutrients to support important growth of the pathogens, and another enabled weaker growth. However, for all, growth was only observed in the samples that did not contain the resident aquatic microbiota. In the original waters with their specific water biota, pathogen levels declined. The same survival tendencies existed in water of 4 °C and 20 °C, although always more expressed at 20 °C. Low water temperatures resulted in longer pathogen survival. Remarkably, the survival capacity of two E. coli 0157:H7 strains differed, while Salmonella Thompson and Salmonella Typhimurium behaved similarly. The pathogens were also transferred to detached lettuce leaves, while suspended in two of the water samples or in a buffer. The effect of the water sample on the pathogen’s fitness was also reproduced on the leaves when stored at 100% relative humidity. Inoculation of the suspension in buffer or in one of the water samples enabled epiphytic growth and survival, while the pathogen level in the other water sample decreased once loaded on the leaves. Our results show that irrigation waters from different origin may have a different capacity to transmit enteric pathogens and an important impact on the fitness of the pathogens to sustain and even grow on the leaf surface.

Key microbial drivers in Antarctic aquatic environments

Antarctica is arguably the world's most important continent for influencing the Earth's climate and ocean ecosystem function. The unique physico-chemical properties of the Southern Ocean enable high levels of microbial primary production to occur. This not only forms the base of a significant fraction of the global oceanic food web, but leads to the sequestration of anthropogenic CO2 and its transport to marine sediments, thereby removing it from the atmosphere; the Southern Ocean accounts for ~ 30% of global ocean uptake of CO2 despite representing ~ 10% of the total surface area of the global ocean. The Antarctic continent itself harbors some liquid water, including a remarkably diverse range of surface and subglacial lakes. Being one of the remaining natural frontiers, Antarctica delivers the paradox of needing to be protected from disturbance while requiring scientific endeavor to discover what is indigenous and learn how best to protect it. Moreover, like many natural environments on Earth, in Antarctica, microorganisms dominate the genetic pool and biomass of the colonizable niches and play the key roles in maintaining proper ecosystem function. This review puts into perspective insight that has been and can be gained about Antarctica's aquatic microbiota using molecular biology, and in particular, metagenomic approaches.