Aquatic Mesocosms Research Articles

Experimental confirmation of effects of leaf litter type and light on tadpole performance for two priority amphibians

AbstractIsolated wetlands embedded within longleaf pine savannas support a high proportion of regional biodiversity including many amphibian species. Today, remnant isolated wetlands are often overgrown and hydrologically altered due to fire exclusion or incompatible, cool season fire regimes. In the absence of warm season fires when wetlands are dry, shrubs and trees succeed herbaceous plants, which alters wetland productivity via effects on light and detritus quality. We used a factorial aquatic mesocosm study to test the effects of altered detritus and shade on the growth, development, and survival of tadpoles of two priority amphibian species: gopher frogs (Rana capito) and ornate chorus frogs (Pseudacris ornata). Gopher frog survival was higher among maidencane, sedge, and pine treatments compared to oak and sweetgum treatments. While gopher frog larval periods were lowest in the sedge treatment, there was a nominal general effect of litter type on gopher frog larval periods, growth rates, and mass at metamorphosis. Shading had a nominal and inconsistent effect on gopher frog growth rates, but did extend larval periods in all litter treatments, decreased survival in all litter treatments except oak, and decreased mass at metamorphosis in all litter treatments except pine and sweetgum. Ornate chorus frog survival was minimally affected by shading and litter treatments, but growth rates and mass at metamorphosis were highest in maidencane and sedge treatments, and larval periods were extended with shading in all litter treatments. Shading also decreased growth rates in maidencane and sedge litters and decreased mass at metamorphosis in pine and sweetgum litters. Our results demonstrate that succession of isolated wetlands can reduce tadpole performance for two priority species both through changes in leaf litter and shading, though the effect on survival, larval growth, larval period, and size at metamorphosis can differ between species. These results support management recommendations to restore and maintain open canopy, grassy conditions in isolated wetlands for conservation of priority amphibian species.

Complex multi‐predator effects on demographic habitat selection and community assembly in colonizing aquatic insects

AbstractRunning the gauntlet of predators consumes critical time and energy resources, as all species are vulnerable to one or, typically, more predators at some life stage. Prey employ a vast array of mechanisms to avoid predation, and predators, likewise, come in a bewildering variety. Thus, defensive adaptations are rarely one size fits all. Considerable work has addressed multi‐predator consumptive effects, but we now know that non‐consumptive effects of predators can dramatically impact individuals, (meta)populations, and (meta)communities. However, little is known regarding the community‐wide dynamics of non‐consumptive effects generated by multiple predators. Predator avoidance by choosing a patch that is free of a particular predator or predators can be the most effective strategy if conditions at colonization are a reliable predictor of absence, which is often true for fish in freshwater systems. We experimentally manipulated composition of the predator assemblage in aquatic mesocosms in a substitutive design, with zero, one, two, or three caged predatory fish species (one benthic, one pelagic, and one surface fish) at constant density and biomass, and assayed responses of naturally colonizing aquatic insects. We addressed three related questions; first, how do members of a diverse assemblage of colonizing aquatic insects respond to this variation in species and species combinations, second, do individual species (and higher taxa), respond differently to single vs. multiple predator species (species richness), and third how do any responses to fish species and species combinations, and effects on species richness, translate into community‐wide changes in the composition of colonists. Prey had varied responses to specific predators or combinations of predators, resulting in distinct community composition across treatments and higher β‐diversity with predators. Prey showed emergent multi‐predator effects, where certain species only responded to predator species combinations, but not to any individual predator, and stronger effects of multiple predator vs. single‐predator treatments, despite strong responses to individual predators in many taxa. Habitat selection effects can range from the individual to the metacommunity, and the dynamics of habitat selection in response to predators is a complex function of predator identity, density, richness, species composition, and patch spatial context.

Impacts of salinization on aquatic communities: Abrupt vs. gradual exposures

Increasing chloride concentrations from road salt applications are an emerging threat to freshwater diversity in cold weather regions. Few studies have focused on how road salt affects freshwater biota and even fewer have focused on how the rate of exposure alters organism responses. We hypothesized that road salt concentrations delivered gradually would result in slower population declines and more rapid rebounds due to evolved tolerance. To test this hypothesis, we examined the responses of freshwater lake organisms to four environmentally relevant salt concentrations (100, 230, 860, and 1600 mg Cl−/L) that differed in application rate (abrupt vs. gradual). We used outdoor aquatic mesocosms containing zooplankton, filamentous algae, phytoplankton, periphyton, and macroinvertebrates. We found negative effects of road salt on zooplankton and macroinvertebrate abundance, but positive effects on phytoplankton and periphyton, likely resulting from reduced grazing. Only rarely did we detect a difference between abrupt vs gradual salt applications and the directions of those differences were not consistent. This affirms the need for additional research on how road salt pollution entering ecosystems at different frequencies and magnitudes will alter freshwater communities.

Intraguild predation dampens trophic cascades in shallow aquatic mesocosms in the subtropics: Implications for lake restoration by biomanipulation

Abstract Intraguild predation (IGP), defined as killing and eating among potential competitors, is commonly observed in shallow lakes and is predicted to dampen trophic cascades and affect ecosystem properties (e.g. phytoplankton biomass or primary production). We tested this hypothesis by manipulating the density of two common lake predators, the small‐sized fish Pelteobagrus fulvidraco (the intraguild predator) and the shrimp Exopalaemon modestus (the intraguild prey), in outdoor mesocosms containing natural phytoplankton and zooplankton communities. In single predator treatments, both predators induced a strong trophic cascade, as evidenced by extinction of the key herbivore, Daphnia pulex, and increasing phytoplankton biomass and chlorophyll a concentration. When the two predators were added together, however, the strength of collective predator effects on zooplankton and the cascading effects on phytoplankton growth were weaker than the sum of the individual predator effects. We attributed this antagonism among predators to intraguild predation as demonstrated by the lower shrimp catch per unit effort in the presence of fish. Our study suggests that common predators in subtropical shallow lakes may act antagonistically and thereby dampen trophic cascades in food webs. Thus, when implementing biomanipulation efforts to suppress algal growth via enhancing zooplankton herbivory, both the quantity and diversity of lake predator assemblies should be considered.

Robustness of Indoor Aquatic Mesocosm Experimentations and Data Reusability to Assess the Environmental Risks of Nanomaterials

Indoor aquatic mesocosms are increasingly used in nanosafety to assess the behavior, fate, and impacts of engineered nanomaterials (ENMs) in aquatic environments using relevant exposure scenarios. The robustness of 60 L freshwater mesocosm experimentation was tested on the basis of the reusability of the data collected in a database named MESOCOSM regarding mesocosm experiments examining the environmental risks of CeO2 ENMs. We observed high reliability of the measured variables across replicates. The sensitivity of this mesocosm methodology was evidenced by the contrasted ecosystem responses revealed by a multivariate analysis. We also observed that adding variables to the data set up to 15% did not affect the outcome of the analysis of the results. This ability to buffer this variability demonstrates that the indoor aquatic mesocosms are robust tools contributing to the environmental risk assessment of ENMs, and stresses the benefit of reusing the data stored in databases such as MESOCOSM adhering to the findable, accessible, interoperable, reusable (FAIR) data principles.

Frequency-dependent transmission of Batrachochytrium salamandrivorans in eastern newts.

Transmission is the fundamental process whereby pathogens infect their hosts and spread through populations, and can be characterized using mathematical functions. The functional form of transmission for emerging pathogens can determine pathogen impacts on host populations and can inform the efficacy of disease management strategies. By directly measuring transmission between infected and susceptible adult eastern newts (Notophthalmus viridescens) in aquatic mesocosms, we identified the most plausible transmission function for the emerging amphibian fungal pathogen Batrachochytrium salamandrivorans (Bsal). Although we considered a range of possible transmission functions, we found that Bsal transmission was best explained by pure frequency dependence. We observed that >90% of susceptible newts became infected within 17 days post‐exposure to an infected newt across a range of host densities and initial infection prevalence treatments. Under these conditions, we estimated R0 = 4.9 for Bsal in an eastern newt population. Our results suggest that Bsal has the capability of driving eastern newt populations to extinction and that managing host density may not be an effective management strategy. Intervention strategies that prevent Bsal introduction or increase host resistance or tolerance to infection may be more effective. Our results add to the growing empirical evidence that transmission of wildlife pathogens can saturate and be functionally frequency‐dependent.

A review on aquatic ecosystem mesocosms.

Aquatic ecosystem mesocosm refers to an artificially constructed near-natural simulation facility in aquatic ecosystem. With aquatic ecosystem mesocosms, experiments on the responses of biological communities can be conducted by controlling physical, chemical and other habitat conditions. Mesocosm experiments can bridge the gap between laboratory experiments and field experiments. Laboratory experiment can only simulate a small number of simple factors, whereas field experimental systems are complex and difficult to conduct controlled experiments. By resear-ching into global long-term mesocosms, we classified them into four types, i.e. flowing type mesocosm, enclosure, land-based simulation pool and mobile experimental tank. The meoscosms gene-rally include physical-biological simulation system, automatic control system, monitoring and analysis system, and central control system. In recent years, aquatic ecosystem research in China has gradually changed from a single environmental factor to the whole ecosystem. We suggest that the construction of the mesocosms in China's aquatic ecosystem should increase the structural complexity and be combined with field in situ monitoring to support large scale simulation.

Leaf litter input to ponds can dramatically alter amphibian morphological phenotypes.

Phenotypic plasticity in growth and development is commonly examined, but morphology can exhibit plasticity as well. Leg length plasticity is important, because it impacts mobility, which affects predator avoidance, prey capture, and seasonal movements. Differences in relative (i.e., body size adjusted) hind leg lengths > 5% in anurans affect jumping abilities, and resource levels and predation can generate these differences. Leaf litter input can alter larval growth and development and likely morphology as well. I show that relative leg length [leg length/snout-to-vent length (SVL) × 100%] can be quite variable, ranging from 44% of SVL to 120% of SVL across the following species: Hyla versicolor, Lithobates sylvaticus, L. sphenocephalus, and Anaxyrus americanus. Within species variability was highest in L. sylvaticus and almost as great as across species. I measured relative leg length for metamorphs from aquatic mesocosm studies examining the effects of plant litter type and quality. I also examined the relative importance of different environmental variables, including water quality, predation, resource level, and temperature. Good predictors were found only for the two ranids, where leaf litter input was the only variable found to affect relative leg length. Ranid frogs had longer legs when emerging from mesocosms with grass than mesocosms with no litter input, and deciduous leaves produced metamorphs intermediate in leg length. These results suggest that habitat changes in vegetation from land use change, invasive species, and climate change may affect the mobility and fitness of individuals through changes in metamorph relative leg length.

Can biomass distribution across trophic levels predict trophic cascades?

AbstractThe biomass distribution across trophic levels (biomass pyramid) and cascading responses to perturbations (trophic cascades) are archetypal representatives of the interconnected set of static and dynamical properties of food chains. A vast literature has explored their respective ecological drivers, sometimes generating correlations between them. Here we instead reveal a fundamental connection: both pyramids and cascades reflect the dynamical sensitivity of the food chain to changes in species intrinsic rates. We deduce a direct relationship between cascades and pyramids, modulated by what we call trophic dissipation – a synthetic concept that encodes the contribution of top‐down propagation of consumer losses in the biomass pyramid. Predictable across‐ecosystem patterns emerge when systems are in similar regimes of trophic dissipation. Data from 31 aquatic mesocosm experiments demonstrate how our approach can reveal the causal mechanisms linking trophic cascades and biomass distributions, thus providing a road map to deduce reliable predictions from empirical patterns.

Parasitism Risk and Infection Alter Host Dispersal

Dispersal determines the spatial dynamics of host-parasite assemblages, particularly during invasions and disease epidemics. The risk of parasitism may create an incentive for dispersal, but infection is expected to reduce dispersal ability, which may alter the host's dispersal response to biotic stressors, including population density. We measured the dispersal of a semiaquatic insect (Notonecta undulata) in aquatic mesocosms in which we manipulated the presence of ectoparasitic Hydrachnidia mites and infected conspecifics. We found that parasitism risk increases host dispersal propensity. Using a flight assay, we determined that parasite infection reduces host dispersal ability. Finally, we used a mark-release-recapture study to investigate the joint effects of both parasitism risk and parasite infection on host dispersal in a natural, spatially structured population. We found that parasitism risk reduced dispersal probability, eliminated positive density-dependent dispersal, and increased dispersal distance. Infection had no effect on dispersal in the natural population. Our results show that parasites can both increase and decrease the movement rates of their hosts, depending on the ecological context, and can alter the host's dispersal response to other biotic stressors. Future studies should consider the consequences of this double-headed impact of parasites for landscape connectivity, population persistence, and host-parasite coevolution.

Decay of infectious adenovirus and coliphages in freshwater habitats is differentially affected by ambient sunlight and the presence of indigenous protozoa communities

BackgroundSanitary quality of recreational waters worldwide is assessed using fecal indicator bacteria (FIB), such as Escherichia coli and enterococci. However, fate and transport characteristics of FIB in aquatic habitats can differ from those of viral pathogens which have been identified as main etiologic agents of recreational waterborne illness. Coliphages (bacteriophages infecting E. coli) are an attractive alternative to FIB because of their many morphological and structural similarities to viral pathogens.MethodsIn this in situ field study, we used a submersible aquatic mesocosm to compare decay characteristics of somatic and F+ coliphages to those of infectious human adenovirus 2 in a freshwater lake. In addition, we also evaluated the effect of ambient sunlight (and associated UV irradiation) and indigenous protozoan communities on decay of somatic and F+ coliphage, as well as infectious adenovirus.ResultsOur results show that decay of coliphages and adenovirus was similar (p = 0.0794), indicating that both of these bacteriophage groups are adequate surrogates for decay of human adenoviruses. Overall, after 8 days the greatest log10 reductions were observed when viruses were exposed to a combination of biotic and abiotic factors (2.92 ± 0.39, 4.48 ± 0.38, 3.40 ± 0.19 for somatic coliphages, F+ coliphages and adenovirus, respectively). Both, indigenous protozoa and ambient sunlight, were important contributors to decay of all three viruses, although the magnitude of that effect differed over time and across viral targets.ConclusionsWhile all viruses studied decayed significantly faster (p < 0.0001) when exposed to ambient sunlight, somatic coliphages were particularly susceptible to sunlight irradiation suggesting a potentially different mechanism of UV damage compared to F+ coliphages and adenoviruses. Presence of indigenous protozoan communities was also a significant contributor (p value range: 0.0016 to < 0.0001) to decay of coliphages and adenovirus suggesting that this rarely studied biotic factor is an important driver of viral reductions in freshwater aquatic habitats.

Multivariate analysis of the exposure and hazard of ceria nanomaterials in indoor aquatic mesocosms

Associating mesocosm experimentations with multivariate analyses to identify the parameters governing the behavior and impact of nanomaterials on aquatic ecosystems.

Resprouting potential of rhizome fragments from invasive macrophyte reveals superior colonization ability of the diploid congener

Abstract Non-native aquatic Ludwigia species from a polyploid complex are among the world’s most problematic invasive plants. These emergent, floating-leaved species respond to disturbance through fragmentation of shoots and/or rhizomes, spreading rapidly by hydrochorous dispersal and posing challenges for invasive plant management. While recruitment of clonal aquatic plant species from shoot fragmentation is well documented, regeneration from rhizome bud banks, although common, often is overlooked. It is further unclear how interactions among ploidy and resource availability influence regeneration success of rhizome fragments. We conducted a full factorial experiment in aquatic mesocosms to compare trait responses of Ludwigia congeners differing in ploidy (diploid, decaploid) grown from clonal rhizome fragments under contrasting soil nutrient availability (low, high). Similar to previous work with shoot fragments, the diploid congener had a higher relative growth rate and produced more biomass than the decaploid during this establishment stage of growth. High growth rates and biomass production were associated with greater rhizome N and P and reduced investment in belowground structures. Comparing these results to previous shoot fragment studies with Ludwigia, rhizome fragments appear to have much greater growth potential, suggesting that management strategies should minimize disturbance to prevent fragmentation and dispersal of belowground structures. Furthermore, rapid response to newly colonizing diploid invaders will be essential to minimizing spread, and reductions in nutrient loads to aquatic environments may be more effective toward controlling establishment of the diploid congener than the decaploid.

Aquatic mesocosms exposed to a fungicide in warm and cold temperate European climate zones: Long-term macroinvertebrate response

At present, the European Union legislation facilitates the use of similar pesticides among European Member States, thereby assuming that biodiversity and ecosystems have equal sensitivities to contaminants throughout the whole of Europe. However, with this assumption, fundamental environmental and biological differences between climatic zones are being ignored in Environmental Risk Assessment. Such differences may strongly influence the behaviour of contaminants, their effects on biodiversity and on the natural functioning of ecosystems. Furthermore, toxicity testing in European ecoregions other than cold-temperate has largely depended on standardized tests using cold-temperate species and conditions, which may lead to a false estimation of risks to organisms from other ecoregions. The present study aim was to determine the response of freshwater macroinvertebrate communities to the fungicide pyrimethanil by conducting aquatic mesocosm experiments in two different ecoregions with different climates: cold-temperate (Frankfurt, Germany) and warm-temperate (Coimbra, Portugal). The results indicate that the community in the cold-temperate climate was more sensitive to the fungicide in comparison to the warm-temperate community. This difference was most likely related to a different rate of fungicide disappearance, which was slower in the colder climate. Based upon our results we discuss important implications for improving Environmental Risk Assessment across climate zones and under present-day global climate change scenarios.

The effect of a common pyrethroid insecticide on wetland communities

Within the past decade, the use of pyrethroid insecticides has drastically increased. While they are known to be directly toxic to aquatic organisms, based primarily on lab experiments, they are not expected to commonly contaminate aquatic ecosystems given their high binding affinities to organic material. However, increasing evidence suggest that pyrethroids do enter aquatic ecosystems via direct application, drift, and run-off. Despite the risks of these highly toxic chemicals, the full suite of direct and indirect effects of pyrethroid insecticides in wetland communities are not well understood. To address this gap, we examined the direct and indirect consequences of a common pyrethroid, permethrin, in complex aquatic mesocosms consisting of three trophic levels and 13 animal species. We found that permethrin was more lethal than laboratory toxicity assays suggest. Even the lowest concentrations of permethrin led to declines and extinctions in animals species across multiple trophic levels. The only animal species not negatively affected by permethrin were snails (Helisoma trivolvis and Physa acuta) and red-spotted newts (Notophthalmus viridescens). We also found that the direct effects of permethrin on anurans triggered indirect effects that facilitated periphyton abundance and increased the mass of those anurans that survived. As the use of pyrethroid insecticides continue to increase, understanding the direct and indirect effects of these insecticides on aquatic systems is critical to developing generalizations about their overall impact.

Sex-specific plasticity of reproductive allocation in response to water depth in a clonal, dioecious macrophyte.

Sex-specific differences in reproductive investment contribute to sexual dimorphism in dioecious plants. Along environmental gradients, males and females may plastically adjust reproductive allocation differently because of contrasting reproductive costs. In dioecious macrophytes, variation in water depth is likely to influence reproductive allocation but has not been investigated in detail. Vallisneria spinulosa was grown in aquatic mesocosms at water depths of 50, 100 and 150 cm for 14 weeks. Plasticity in allocation was measured to investigate whether sexual dimorphism in reproductive allocation and vegetative growth changed in response to varying water depths. Females invested a higher fraction of resources to sexual reproduction than males across all water depths and decreased proportional allocation to sexual structures in shallow and deep water compared to intermediate water depth. In contrast, males maintained similar sexual allocation across all water depths. Females displayed larger vegetative size than males, despite greater sexual investment, but decreased vegetative biomass more than males in shallow or deep water. The sexes invested similarly in clonal propagation by tubers at all water depths, but a trade-off with sexual reproduction was only evident in females. Our results suggest that females of V. spinulosa have mechanisms to compensate for the costs of sexual reproduction in heterogeneous environments. Compared to males, females expressed greater plasticity in biomass allocated to sexual reproduction and vegetative growth in response to water depth variation. Environmental variation in underwater light availability probably caused the sex-specific allocation strategies found in V. spinulosa.

Sexual dimorphism in a top predator (Notophthalmus viridescens) drives aquatic prey community assembly.

Intraspecific variation can have important consequences for the structure and function of ecological communities, and serves to link community ecology to evolutionary processes. Differences between the sexes are an overwhelmingly common form of intraspecific variation, but its community-level consequences have never been experimentally investigated. Here, we manipulate the sex ratio of a sexually dimorphic predacious newt in aquatic mesocosms, then track their impact on prey communities. Female and male newts preferentially forage in the benthic and pelagic zones, respectively, causing corresponding reductions in prey abundances in those habitats. Sex ratio differences also explained a large proportion (33%) of differences in the composition of entire pond communities. Ultimately, we demonstrate the impact of known patterns of sexual dimorphism in a predator on its prey, uncovering overlooked links between evolutionary adaptation and the structure of contemporary communities. Given the extreme prevalence of sexual dimorphism, we argue that the independent evolution of the sexes will often have important consequences for ecological communities.

Landscape heterogeneity strengthens the relationship between β-diversity and ecosystem function.

Consensus has emerged in the literature that increased biodiversity enhances the capacity of ecosystems to perform multiple functions. However, most biodiversity/ecosystem function studies focus on a single ecosystem, or on landscapes of homogenous ecosystems. Here, we investigate how increased landscape-level environmental dissimilarity may affect the relationship between different metrics of diversity (α, β, or γ) and ecosystem function. We produced a suite of simulated landscapes, each of which contained four experimental outdoor aquatic mesocosms. Differences in temperature and nutrient conditions of the mesocosms allowed us to simulate landscapes containing a range of within-landscape environmental heterogeneities. We found that the variation in ecosystem functions was primarily controlled by environmental conditions, with diversity metrics accounting for a smaller (but significant) amount of variation in function. When landscapes were more homogeneous, α, β, and γ diversity was not associated with differences in primary production, and only γ was associated with changes in decomposition. In these homogeneous landscapes, differences in these two ecosystem functions were most strongly related to nutrient and temperature conditions in the ecosystems. However, as landscape-level environmental dissimilarity increased, the relationship between α, β, or γ and ecosystem functions strengthened, with β being a greater predictor of variation in decomposition at the highest levels of environmental dissimilarity than α or γ. We propose that when all ecosystems in a landscape have similar environmental conditions, species sorting is likely to generate a single community composition that is well suited to those environmental conditions, β is low, and the efficiency of diversity-ecosystem function couplings is similar across communities. Under this low β, the effect of abiotic conditions on ecosystem function will be most apparent. However, when environmental conditions vary among ecosystems, species sorting pressures are different among ecosystems, producing different communities among locations in a landscape. These conditions lead to stronger relationships between β and the magnitude of ecosystem functions. Our results illustrate that abiotic conditions and the homogeneity of communities influence ecosystem function expressed at the landscape scale.

Recipient ecosystem productivity influences effects of resource pulses in mesocosms

Resource pulses are found in a variety of ecosystems and are becoming a prevailing theme in ecology. However, limited information is available regarding how recipient ecosystem productivity influences effects of resource pulses. Our objective was to compare the abundance, stability, and food web responses of nutrients and primary producers and consumers in oligotrophic versus eutrophic aquatic mesocosms receiving resource pulses of decaying fish. Nutrient availability and primary producer and consumer abundance were generally different between trophic states and pulsed treatments. Nitrate decreased and phytoplankton increased as a result of the pulse, whereas total Kjeldahl nitrogen, copepods, and total zooplankton increased following the pulse in oligotrophic but not eutrophic mesocosms. Gastropod density was higher in non-pulsed oligotrophic compared to pulsed eutrophic mesocosms but was not affected by the pulse within a trophic state. Despite temporal variation of all parameters, ecosystem stability was not affected by the pulse. Several differences in δ15N and δ13C values were also observed between biota in oligotrophic and eutrophic mesocosms, but only amphipod δ13C values in eutrophic mesocosms were depleted by the pulse. Overall, our results indicate that recipient ecosystem productivity is an important factor regulating the effects of resource pulses, with implications for ecosystems and food web structure.

Extended persistence of general and cattle-associated fecal indicators in marine and freshwater environment

Fecal contamination of recreational waters with cattle manure can pose a risk to public health due to the potential presence of various zoonotic pathogens. Fecal indicator bacteria (FIB) have a long history of use in the assessment of recreational water quality, but FIB quantification provides no information about pollution sources. Microbial source tracking (MST) markers have been developed in response to a need to identify pollution sources, yet factors that influence their decay in ambient waters are often poorly understood. We investigated the influence of water type (freshwater versus marine) and select environmental parameters (indigenous microbiota, ambient sunlight) on the decay of FIB and MST markers originating from cattle manure. Experiments were conducted in situ using a submersible aquatic mesocosm containing dialysis bags filled with a mixture of cattle manure and ambient water. Culturable FIB (E. coli, enterococci) were enumerated by membrane filtration and general fecal indicator bacteria (GenBac3, Entero1a, EC23S857) and MST markers (Rum2Bac, CowM2, CowM3) were estimated by qPCR. Water type was the most significant factor influencing decay (three-way ANOVA, p: 0.006 to <0.001), although the magnitude of the effect differed among microbial targets and over time. The presence of indigenous microbiota and exposure to sunlight were significantly correlated (three-way ANOVA, p: 0.044 to <0.001) with decay of enterococci and CowM2, while E. coli, EC23S857, Rum2Bac, and CowM3 (three-way ANOVA, p: 0.044 < 0.001) were significantly impacted by sunlight or indigenous microbiota. Results indicate extended persistence of both cultivated FIB and genetic markers in marine and freshwater water types. Findings suggest that multiple environmental stressors are important determinants of FIB and MST marker persistence, but their magnitude can vary across indicators. Selective exclusion of natural aquatic microbiota and/or sunlight typically resulted in extended survival, but the effect was minor and limited to select microbial targets.