Aquatic Cycling Research Articles

New Methods, New Concepts: What Can Be Applied to Freshwater Periphyton?

Microbial interactions play an essential role in aquatic ecosystems and are of the great interest for both marine and freshwater ecologists. Recent development of new technologies and methods allowed to reveal many functional mechanisms and create new concepts. Yet, many fundamental aspects of microbial interactions have been almost exclusively studied for marine pelagic and benthic ecosystems. These studies resulted in a formulation of the Black Queen Hypothesis, a development of the phycosphere concept for pelagic communities, and a realization of microbial communication as a key mechanism for microbial interactions. In freshwater ecosystems, especially for periphyton communities, studies focus mainly on physiology, biodiversity, biological indication, and assessment, but the many aspects of microbial interactions are neglected to a large extent. Since periphyton plays a great role for aquatic nutrient cycling, provides the basis for water purification, and can be regarded as a hotspot of microbial biodiversity, we highlight that more in-depth studies on microbial interactions in periphyton are needed to improve our understanding on functioning of freshwater ecosystems. In this paper we first present an overview on recent concepts (e.g., the “Black Queen Hypothesis”) derived from state-of-the-art OMICS methods including metagenomics, metatranscriptomics, and metabolomics. We then point to the avenues how these methods can be applied for future studies on biodiversity and the ecological role of freshwater periphyton, a yet largely neglected component of many freshwater ecosystems.

Randomized Controlled Trial of Aquatic Cycling for Treatment of Knee Osteoarthritis in Elderly People

Objective: To assess the effects of aqua-cycling on pain, physical function, and muscle strength among elderly people with knee osteoarthritis. Methods: We performed a randomized controlled trial from November 2016 through July 2017 in an outpatient clinic of the Department of Physical Medicine and Rehabilitation at the University Hospital. Patients were 60 years and older and had knee osteoarthritis. Among 32 patients who were randomly allocated to the groups aqua-cycling and control, 30 completed the study. We used the Knee injury and Osteoarthritis Outcome Score to assess the patients' opinion about their knees and associated problems. The measurements were performed at the baseline, and after 4, 8, and 12 sessions of aqua-cycling. Participants in the intervention group performed aqua-cycling, 3 sessions per week for 4 weeks. Each session lasted 50 minutes including 10 minutes of warm-up, 30 minutes of cycling, and 10 minutes of cool-down exercises. Both groups used acetaminophen, if needed, and followed lifestyle recommendations for 4 weeks. Results: There were significant improvements in pain reduction, physical function, and muscle strength in favor of aqua-cycling (all P < .001). Within-group analyses showed that participants in the aqua-cycling group experienced significant pain reduction (P < .001), and improved in physical function (P < .001), quadriceps (P < .001), and hamstring muscle strength (P < .001). Within-group comparisons for the group control were not significant (all P > .05). Conclusion: Aqua-cycling is effective, and can be used alone or combined with other treatments in the management of osteoarthritis.

Aquatic Cycling Improves Knee Pain and Physical Functioning in Patients With Knee Osteoarthritis: A Randomized Controlled Trial

ObjectiveTo assess the efficacy of a 12-week aquatic cycling training program for improving knee pain and physical functioning in patients with knee osteoarthritis (OA). DesignTwo-arm, single-blind, parallel-group randomized controlled trial. SettingsOA outpatient clinic of the Maastricht University Medical Center+. ParticipantsPatients (N=111, 50-70y) with unilateral mild-to-moderate knee OA. InterventionsParticipants (aquatic cycling [AC] group, n=55) received AC sessions of 45 min each 2 times per week. Each session combined upright seated cycling with out-of-saddle positions and exercises for the upper and lower body. The usual care (UC) group (n=47) continued with UC and was offered 12 AC sessions in a local swimming pool after their trial participation. Main Outcome MeasuresThe Knee Injury and Osteoarthritis Outcome Score (KOOS) on knee pain and physical function was assessed at baseline, postintervention, and at 24-wk follow-up. Multilevel (mixed regression) analysis examined the effects. ResultsAverage attendance rate for the AC sessions was 80%. Statistically significant differences at postintervention and follow-up were found for knee pain in mean ± SD (UC pretest, 57.89±15.26; posttest, 55.90±18.04; follow-up, 57.24±19.16; and AC pretest, 56.96±12.96; posttest, 63.55±15.33; follow-up, 64.35±17.26; estimate, 8.16; SE, 3.27; 95% confidence interval [CI], 1.67-14.64; effect size [ES], 0.50) and physical functioning (UC pretest, 66.32±16.28; posttest, 66.80±19.04; follow-up, 65.42±17.98; and AC pretest, 61.89±17.151; posttest, 70.14±17.52; follow-up, 69.00±16.84; estimate, 7.16; SE, 3.19; 95% CI, 0.83-13.49; ES, 0.43) in favor of the aquatic group. ConclusionsThe results suggest that a 12-week AC training program improves self-reported knee pain and physical functioning in patients with mild-to-moderate knee OA compared to UC.

Silica Storage, Fluxes, and Nutrient Stoichiometry in Different Benthic Primary Producer Communities in the Littoral Zone of a Deep Subalpine Lake (Lake Iseo, Italy)

Benthic vegetation at the land-water interface is recognized as a filter for silica fluxes, which represents an important but under-investigated subject. This paper aims to analyze stocks and fluxes of biogenic (BSi) and dissolved (DSi) silica in relation to nitrogen (N) and phosphorus (P) in the littoral zone of a deep lake. Specifically, we evaluated how different primary producers can influence BSi retention and DSi release. The study was performed from April to October in 2017, in three different benthic communities: submerged aquatic vegetation (SAV) and microphytobenthos (MPB), both occurring in soft bottom sediments, and epilithic macro- and microalgae (EA) on rocky substrates. The main result was that SAV and MPB were a DSi source and a N and P sink with the DSi efflux from SAV nearly three times as much as in MPB patches. These findings corroborate the hypothesis that SAV mediates the DSi transport from pore water to the water column. Conversely, EA communities were a DSi sink and a N and P source. Overall, these results highlight the fact that the littoral zone of lakes plays a key role in regulating aquatic Si cycling, which is likely to depend on the health status of SAV communities.

Convergence of Terrestrial Dissolved Organic Matter Composition and the Role of Microbial Buffering in Aquatic Ecosystems

AbstractSubstantial changes in vegetation are expected as global climatic patterns shift, altering terrestrial sources of dissolved organic matter (DOM) entering rivers and streams. Since differences in the chemical composition of plant litters are reflected in the DOM that is leached, changes in riparian vegetation can directly influence the bioavailability of DOM to local aquatic microbial communities. We assessed the degradation dynamics and optical compositional changes of DOM from a variety of vascular plant leachates through microbial and coupled photochemical‐microbial degradation pathways. Initial decay rates ranged from 0.029 ± 0.011 day−1 (microbial, mixed wetland) to 0.73 ± 0.62 day−1 (photochemical‐microbial, mixed grasses), and all decay rates decreased to below 0.05 day−1 after 1 week, converging below 0.029 day−1 after 2 weeks. Overall, we found a decrease in leachate optical diversity under microbial and photochemical‐microbial degradations, corresponding to a decrease in degraded leachate sample dispersion using principal component analysis. We show that despite initial variability across DOM leachates, successive degradation promotes kinetic and optical convergence such that, in aquatic environments with long residence times, terrestrial DOM source and composition are much less important on exported DOM composition than historically thought. In these systems, DOM compositional convergence may act as a natural buffer to provide stability of aquatic DOM cycling in the face of future landscape changes.

Extreme rates and diel variability of planktonic respiration in a shallow sub-arctic lake

Planktonic community respiration (CR) is a major component of aquatic biogeochemical cycling and food web energetics. Accurate, direct characterizations of short-term patterns and drivers of plankton CR are needed to understand aquatic biogeochemical processes and food web functioning. Recent work indicates CR may be commonly underestimated, and may undergo considerable diel changes that are missed using standard methodological approaches. To explore these possibilities, we applied an immediate, in situ, dark incubation approach at ~ 3 h intervals over 2.5 diel cycles in a shallow, productive, sub-arctic lake in interior Alaska, USA. Rates of CR varied 17-fold, strongly coupled to diel oscillations in water temperature. A weak inverse relationship to ~ 3 mg L−1 diel changes in dissolved organic carbon concentrations suggests CR partially modulated the standing stock of organic matter over short timescales. Average rates of CR were ~ 6 to 100-fold greater than published, conventional CR measurements, but comparable to existing free-water estimates of ecosystem respiration for nearby Alaskan lakes. Overall, this study places new weight on the importance of CR in whole-ecosystem biogeochemical transformations by supporting recent suggestions that planktonic CR may be commonly underestimated.

The contrasting roles of aquatic fungi and oomycetes in the degradation and transformation of polymeric organic matter

AbstractStudies on the ecological role of fungi and, to a lesser extent, oomycetes, are receiving increasing attention, mainly due to their participation in the cycling of organic matter in aquatic ecosystems. To unravel their importance in humification processes, we isolated several strains of fungi and oomycetes from Anzali lagoon, Iran. We then performed taxonomic characterization by morphological and molecular methods, analyzed the ability to degrade several polymeric substrates, performed metabolic fingerprinting with Ecoplates, and determined the degradation of humic substances (HS) using liquid chromatography‐organic carbon detection. Our analyses highlighted the capacity of aquatic fungi to better degrade a plethora of organic molecules, including complex polymers. Specifically, we were able to demonstrate not only the utilization of these complex polymers, but also the role of fungi in the production of HS. In contrast, oomycetes, despite some morphological and physiological similarities with aquatic fungi, exhibited a propensity toward opportunism, quickly benefitting from the availability of small organic molecules, while exhibiting sensitivity toward more complex polymers. Despite their contrasting roles, our study highlights the importance of both oomycetes and fungi in aquatic organic matter transformation and cycling with potential implications for the global carbon cycle.

Reduced daytime net growth rate of Synechococcus spp. in the East China sea in summer estimated using a dilution approach

Viruses are thought to play a critical role in aquatic nutrient cycling, yet few field experiments have quantified their significance. We conducted fifteen modified dilution experiments in the East China Sea in summer to determine the growth rate and effect of mortality on growth rates of Synechococcus spp. They were measured in a 0.2 μm dilution series in which the abundance of Synechococcus spp. and nanoflagellates were diluted but the viruses were retained. They were also measured in a 30 kDa filtered natural samples in which the abundance of Synechococcus spp., nanoflagellates and viruses were diluted. We found positive relationships between dilution factor and Synechococcus spp. net growth rates. Instantaneous growth rate of Synechococcus spp in 100% whole water generally exceeded rates in other dilution fraction treatments, a result of net growth rates of Synechococcus spp. in undiluted incubations. Throughout the entire study area, growth rate of Synechococcus app. was highly variable and ranged from 0.01 h−1 to 0.17 h−1, with a maximum value appearing in waters with a salinity of around 31 psμ. Most importantly, net growth rates of Synechococcus spp. were suppressed in the 30 kDa dilution series compared to the 0.2 μm dilution series dilution experiments, suggesting that dissolved organic matter available to heterotrophic bacteria and viral lysis contributed to nutrient cycling and made a difference in the growth rates found in the two dilution series.

Nondestructive 3D Imaging and Quantification of Hydrated Biofilm-Sediment Aggregates Using X-ray Microcomputed Tomography.

Biofilm-sediment aggregate (BSA) contains a high water content, either within internal pores and channels or bound by extracellular polymeric substances (EPS) forming a highly hydrated biofilm matrix. Desiccation of BSAs alters the biofilm morphology and thus the physical characteristics of porous media, such as the binding matrix within BSA and internal pore geometry. Observing BSAs in their naturally hydrated form is essential but hampered due to the lack of techniques for imaging and discerning hydrated materials. Generally, imagery techniques (scanning electron microscopy (SEM), transmission electron microscopy (TEM), and focused ion beam nanotomography (FIB-nt)) involve the desiccation of BSAs (freeze-drying or acetone dehydration) or prevent differentiation between BSA components such as inorganic particles and pore water (confocal laser scanning microscopic (CLSM)). Here, we propose a novel methodology that simultaneously achieves the 3D visualization and quantification of BSAs and their components in their hydrated form at a submicron resolution using X-ray microcomputed tomography (μ-CT). It enables the high-resolution detection of comparable morphology of multiphase components within a hydrated aggregate: each single inorganic particle and the hydrated biofilm matrix. This allows the estimation of aggregate density and the illustration of biofilm-sediment binding matrix. This information provides valuable insights into investigations of the transport of BSAs and aggregate-associated sediment particles, contaminants (such as microplastics), organic carbon, and their impacts on aquatic biogeochemical cycling.

Recent changes in chironomid communities and hypolimnetic oxygen conditions relate to organic carbon in subarctic ecotonal lakes

A key question in aquatic elemental cycling is related to the influence of bottom water oxygen conditions in regulating the burial and release of carbon under climate warming. In this study, we used head capsules of Chironomidae larvae to assess community and diversity change between the past (estimated as Pre-Industrial Period) and present and to reconstruct changes in hypolimnetic oxygen conditions from 30 subarctic ecotonal lakes (northeastern Lapland) using the top-bottom paleolimnological approach applying surface sediment (topmost 0–2 cm) and reference (4–5 cm) samples. Subsequently, we tested the findings against dissolved organic carbon (DOC) concentration of the sites. We found that the benthic communities were statistically dissimilar between the past and the present with largest changes occurring in the more transparent oligo-mesohumic lakes. However, murky polyhumic lakes displayed uniformly a decrease in diversity. The chironomid-inferred oxygen values showed a general decrease toward the present with largest shifts in low-DOC lakes, whereas no significant changes were found in the hypolimnetic oxygen conditions of high-DOC lakes, which were often located in wetland areas. These finding suggest that lakes associated with constant organic carbon inputs are more resilient toward climate-induced reductions in hypolimnetic oxygen.

From concept to practice to policy: modeling coupled natural and human systems in lake catchments

AbstractRecent debate over the scope of the U.S. Clean Water Act underscores the need to develop a robust body of scientific work that defines the connectivity between freshwater systems and people. Coupled natural and human systems (CNHS) modeling is one tool that can be used to study the complex, reciprocal linkages between human actions and ecosystem processes. Well‐developed CNHS models exist at a conceptual level, but the mapping of these system representations in practice is limited in capturing these feedbacks. This article presents a paired conceptual–empirical methodology for functionally capturing feedbacks between human and natural systems in freshwater lake catchments, from human actions to the ecosystem and from the ecosystem back to human actions. We address extant challenges in CNHS modeling, which arise from differences in disciplinary approach, model structure, and spatiotemporal resolution, to connect a suite of models. In doing so, we create an integrated, multi‐disciplinary tool that captures diverse processes that operate at multiple scales, including land‐management decision‐making, hydrologic‐solute transport, aquatic nutrient cycling, and civic engagement. In this article, we build on this novel framework to advance cross‐disciplinary dialogue to move CNHS lake‐catchment modeling in a systematic direction and, ultimately, provide a foundation for smart decision‐making and policy.

Dissolved black carbon in aquatic ecosystems

AbstractThe incomplete combustion of organic molecules produces a chemically diverse suite of pyrogenic residues termed black carbon (BC). The significance of BC cycling on land has long been recognized, and the recognition of dissolved BC (DBC) as a major component of the aquatic carbon cycle is developing rapidly. As we seek a greater understanding of DBC cycling, our interpretation of environmental DBC concentrations and molecular composition should take into account both the formation conditions of charred residues, and the physico‐chemical transformation of DBC that occurs during transit within aquatic systems. We present the current state of knowledge concerning sources, processing, and sinks of DBC in inland, coastal/estuarine, and ocean waters. We feature studies and new methodologies which focus specifically on the aquatic cycling of DBC, explore the relationship between particulate and dissolved BC, and highlight research gaps which should be targeted to advance our current knowledge of DBC biogeochemistry.

Temporal variability in the importance of hydrologic, biotic, and climatic descriptors of dissolved oxygen dynamics in a shallow tidal‐marsh creek

AbstractDue to strong abiotic forcing, dissolved oxygen (DO) in shallow tidal creeks often disobeys the conventional explanation of general aquatic DO cycling as biologically regulated. In the present work, we seek to quantify the relative importance of abiotic (hydrologic and climatic), and biotic (primary productivity as represented by chlorophyll‐a) descriptors of tidal creek DO. By fitting multiple linear regression models of DO to hourly chlorophyll‐a, water quality, hydrology, and weather data collected in a tidal creek of a Chesapeake Bay marsh (Maryland, USA), temporal shifts (summer‐early winter) in the relative importance of tidal creek DO descriptors were uncovered. Moreover, this analysis identified an alternative approach to evaluating tidal stage as a driver of DO by dividing stage into two DO‐relevant variables: stage above and below bankfull depth. Within the hydrologic variable class, stage below bankfull depth dominated as an important descriptor, thus highlighting the role of pore water drainage and mixing as influential processes forcing tidal creek DO. Study findings suggest that tidal creek DO dynamics are explained by a balance of hydrologic, climatic, and biotic descriptors during warmer seasons due to many of these variables (i.e., chlorophyll‐a, water temperature) acting as tracers of estuarine‐marsh water mixing; conversely, in early winter months when estuarine and marsh waters differ less distinctly, hydrologic variables increase in relative importance as descriptors of tidal creek DO. These findings underline important distinctions in the underlying mechanisms dictating DO variability in shallow tidal marsh‐creek environments relative to open water estuarine systems.

Aquatic toxicity of ivermectin in cattle dung assessed using microcosms

Ivermectin (IVM) is a parasiticide widely used for livestock. It is a semisynthetic derivative of avermectin, a macrocyclic lactone produced by Streptomyces avermitilis. This drug is only partly metabolized by livestock; considerable amounts of parent drug are excreted mostly via feces. To simulate exposure of aquatic invertebrates and macrophytes to direct excretion of cattle dung into surface waters, a microcosm experiment with IVM spiked in cattle dung was conducted. The objectives of this study were to characterize accumulation of IVM in water, sediment+dung, roots of the floating fern Salvinia and the zooplankton Ceriodaphnia dubia, the amphipod Hyalella and the apple snail Pomacea; to determine the effect of this drug spiked in cattle dung on life-history traits of these invertebrates; and to evaluate the influence of IVM on aquatic nutrient cycling. Dung was spiked with IVM to attain concentrations of 1150, 458, 50 and 22µgkg−1dung fresh weight, approximating those found in cattle dung at days 3, 7, 16 and 29 following subcutaneous injection. Concentrations found in dung during the first week of excretion were lethally toxic to Ceriodaphnia dubia and Hyalella, whereas no mortality was observed in Pomacea. Concentrations of IVM in roots, sediment + dung and Pomacea increased significantly from the lowest to the highest treatment level. The effect of this drug on decomposition and release of nutrients from dung would have negative consequences for nutrient cycling in water. Increasing concentrations in sediment + dung with days of the experiment suggested that toxic concentrations would persist for an extended period in the water–sediment system. IVM represents an ecological risk for aquatic ecosystems, underscoring the need for livestock management strategies to limit its entry into water bodies.

Aquatic cycling-What do we know? A scoping review on head-out aquatic cycling.

Over the past few years, aquatic cycling has become a trending fitness activity. However, the literature has not been reviewed exhaustively. Therefore, using scoping review methodology, the aim of this review was to explore the current state of the literature concerning aquatic cycling. This study specifically focused on study designs, populations and outcomes. A comprehensive search of seven databases (PubMed, MEDLINE, Cinahl, Embase, PEDro,Web of Science, WorldCat) was conducted up to 30th September 2016. GoogleScholar, World Cat, ResearchGate, specific aquatic therapy websites and aquatic therapy journals were searched to identify additional literature. Full-text publications in English, German or Dutch were included. Studies were included when the intervention involved head-out cycling carried out in 10° to 35° Celsius water. Exclusion criteria were the use of wet suits or confounding interventions that would affect participants’ homeostasis. 63 articles were included and the study parameters of these studies were summarized. Using three grouping themes, included studies were categorised as 1) single session tests comparing aquatic versus land cycling, or 2) aquatic cycling only sessions investigating different exercise conditions and 3) aquatic cycling intervention programmes. Although the experimental conditions differed noticeably across the studies, shared characteristics were identified. Cardiovascular parameters were investigated by many of the studies with the results suggesting that the cardiac demand of aquatic cycling seems similar to land-based cycling. Only six studies evaluated the effect of aquatic cycling interventions. Therefore, future research should investigate the effects of aquatic cycling interventions, preferably in individuals that are expected to gain health benefits from aquatic cycling. Moreover, this comprehensive outline of available literature could serve as a starting point for systematic reviews or clinical studies on the effects of aquatic cycling on the cardiovascular responses.

Exercise-Induced Pulmonary Edema in Athletes

Several pulmonary conditions were proven to be fatal in athletes. One of these conditions is pulmonary edema in athletes which requires differential diagnosis and often management in the ICU. Pulmonary edema in athletes can develop due to different sport activities including swimming, diving, running, cycling, mountain biking and the etiology and pathophysiology of these conditions may be different. This underlines the importance of pulmonary medicine specialist in the management of acute disease in athletes. The review focuses on pulmonary edema in athletes who participate in aquatic activities, running, cycling and mountain biking. Keywords: Athletes, pathophysiology, pulmonary edema.

Acute breathing patterns in healthy and heart disease participants during cycling at different levels of immersion

We aimed to determine the effect of aquatic cycling and different levels of immersion on respiratory responses in healthy and heart disease (HD) volunteers. Thirty-four age matched volunteers, 21 HD and 13 healthy controls (HC) took part in this study. The ventilatory pattern, phase 1VE and steady-state ventilatory responses to progressive exercise from 40 to peak rpm, were measured while participants exercised on a water stationary bike (WSB) at different levels of immersion. No effect of immersion was observed on steady-state respiratory responses in the HD group, but immersion reduced VE phase 1 by ∼79% at pedaling cadences of 40, 50 and 60rpm. In conclusion, immersion at hips and xiphoid process blunted the fast drive to breathe in the HD group. This transient effect on the respiratory response to immersed exercise cannot be considered a contraindication for exercise in HD individuals.

Redox stability regulates community structure of active microbes at the sediment-water interface.

Changes in redox conditions occur in a wide range of microbial habitats, in particular at the sediment-water interface (SWI) of aquatic systems. A mesocosm study using intact sediment cores from Lake Stechlin (Germany) was performed to investigate the impact of redox changes on microbial communities at the SWI. The SWI was exposed to permanent oxic (OX) or anoxic (ANOX) or to variable (VR) redox conditions, and for molecular analysis sediment samples were taken at the start and after seven days of the treatment. We performed 16S rRNA amplicon sequencing to identify redox-specific changes in the composition of metabolically active microbes. Generally, the community of active microbes in the VR cores was similar to in the OX cores, but differed significantly from the ANOX cores. Interestingly, VR conditions resulted in a high fraction of a Crenothrix-like microorganism increasing in read abundance from 4 to 5% initially, up to 69% over the experimental period. This implies that periodic redox fluctuations select for specific bacteria in environments such as seiches-affected sediments of stratified lakes. In Lake Stechlin sediment cores, these redox fluctuations lead to increased activities of specific microorganisms and high organic matter turnover rates with profound implications for aquatic organic matter cycling.

Over-Winter Channel Bed Temperature Regimes Generated by Contrasting Snow Accumulation in a High Arctic River

We report experimental results of near-surface winter temperatures along and adjacent to the channel bed of a High Arctic river on Melville Island, Canada. Temperature loggers 5 cm below the ground surface in areas where the terrain suggests varying snow accumulation patterns revealed that the maximum winter difference between air and near-surface temperatures ranged from 0 to +30°C during the winter of 2012–13, and that shallow near-surface freezing conditions were delayed for up to 21 days in some locations. Cooling to -10°C was delayed for up to 117 days. Modelled temperature at the top of permafrost indicates that permafrost at locations with thick snow can be up to 8°C warmer than those with thin snow. This thermal evidence for an ameliorated surface environment indicates the potential for substantial extended microbial and biogeochemical cycling during early winter. Rapid thaw of the bed during initiation of snowmelt in spring also indicates a high degree of hydrological connectivity. Therefore, snow-filled channels may contribute to biogeochemical and aquatic cycling in High Arctic rivers. Copyright © 2016 John Wiley & Sons, Ltd.

18S rDNA dataset profiling microeukaryotic populations within Chicago area nearshore waters.

Despite their critical role in the aquatic food web and nutrient cycling, microeukaryotes within freshwater environments are under-studied. Herein we present the first high-throughput molecular survey of microeukaryotes within Lake Michigan. Every two weeks from May 13 to August 5, 2014, we collected surface water samples from the nearshore waters of four Chicago area beaches: Gillson Park, Montrose Beach, 57th Street Beach, and Calumet Beach. Four biological replicates were collected for each sampling date and location, resulting in 112 samples. Eighty-nine of these samples were surveyed through targeted sequencing of the V7 and V8 regions of the 18S rDNA gene. Both technical and biological replicates were sequenced and are included in this dataset. Raw sequence data is available via NCBI’s SRA database (BioProject PRJNA294919).