In this study, we developed a simple, low-temperature method to synthesize carbonized polymer nanosheets (CPNSs) using sodium alginate, a biopolymer derived from algae, and diammonium hydrogen phosphate. These nanosheets are produced through a solid-state pyrolysis at 180 °C, involving dehydration, cross-linking through phosphate ester bonds, and subsequent carbonization, forming 2D structured CPNSs. These synthesized CPNSs exhibit excellent bacterial adsorption capabilities, particularly against V. parahaemolyticus and S. aureus. When applied to ordinary filter paper, the CPNS-modified paper efficiently filters bacteria from aquaculture water, removing over 98% of V. parahaemolyticus within two hours and maintaining effectiveness after 24 h. In contrast, control filter paper showed significantly reduced efficiency over the same period. Our filtration tests demonstrated enhanced survival rates for shrimp in aquaculture systems, highlighting the potential of CPNSs-modified filter paper as a suitable treatment to reduce the microbiological contamination levels in recirculating aquaculture systems in the event of a disease outbreak.